RNA–Protein interactions for RNA: ENST00000467915.1

SGSM3-206, Transcript of small G protein signaling modulator 3, human

TSL 3

Gene SGSM3, Length 769 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SGSM3-206	ENST00000467915	NISCH	Q9Y2I1	1504 aa		39.48	■■■■□ 3.91
SGSM3-206	ENST00000467915	ABCC9	O60706	1549 aa		35.42	■■■■□ 3.26
SGSM3-206	ENST00000467915	CCDC180	Q9P1Z9	1646 aa		35.26	■■■■□ 3.24
SGSM3-206	ENST00000467915	RB1CC1	Q8TDY2	1594 aa		33.6	■■■□□ 2.97
SGSM3-206	ENST00000467915	DCAF8L2	P0C7V8	631 aa		33.42	■■■□□ 2.94
SGSM3-206	ENST00000467915	NACAD	O15069	1562 aa		33.38	■■■□□ 2.93
SGSM3-206	ENST00000467915	DNAJC5B	Q9UF47	199 aa		33.31	■■■□□ 2.92
SGSM3-206	ENST00000467915	PABPN1	Q86U42	306 aa	Known RBP eCLIP	33.07	■■■□□ 2.88
SGSM3-206	ENST00000467915	MYO15B	Q96JP2	1530 aa		32.92	■■■□□ 2.86
SGSM3-206	ENST00000467915	UNC13A	Q9UPW8	1703 aa		32.82	■■■□□ 2.85
SGSM3-206	ENST00000467915	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.72	■■■□□ 2.83
SGSM3-206	ENST00000467915	BICRA	Q9NZM4	1560 aa		32.71	■■■□□ 2.83
SGSM3-206	ENST00000467915	DCAF1	Q9Y4B6	1507 aa		32.54	■■■□□ 2.8
SGSM3-206	ENST00000467915	SCRIB	Q14160	1630 aa		32.27	■■■□□ 2.76
SGSM3-206	ENST00000467915	SHROOM4	Q9ULL8	1493 aa		32.12	■■■□□ 2.73
SGSM3-206	ENST00000467915	CC2D2A	Q9P2K1	1620 aa		31.93	■■■□□ 2.7
SGSM3-206	ENST00000467915	EIF4G1	Q04637	1599 aa	Known RBP	31.86	■■■□□ 2.69
SGSM3-206	ENST00000467915	CECR2	Q9BXF3	1484 aa		31.85	■■■□□ 2.69
SGSM3-206	ENST00000467915	NCAPD3	P42695	1498 aa		30.89	■■■□□ 2.54
SGSM3-206	ENST00000467915	ATAD2B	Q9ULI0	1458 aa		30.82	■■■□□ 2.53
SGSM3-206	ENST00000467915	SMARCA4	P51532	1647 aa		30.75	■■■□□ 2.51
SGSM3-206	ENST00000467915	SMARCA2	P51531	1590 aa		30.66	■■■□□ 2.5
SGSM3-206	ENST00000467915	HMGXB3	Q12766	1538 aa		30.6	■■■□□ 2.49
SGSM3-206	ENST00000467915	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.58	■■■□□ 2.49
SGSM3-206	ENST00000467915	ERCC6	Q03468	1493 aa		30.5	■■■□□ 2.47
SGSM3-206	ENST00000467915	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.49	■■■□□ 2.47
SGSM3-206	ENST00000467915	MROH2B	Q7Z745	1585 aa		30.47	■■■□□ 2.47
SGSM3-206	ENST00000467915	NES	P48681	1621 aa		30.46	■■■□□ 2.47
SGSM3-206	ENST00000467915	DNAJC5	Q9H3Z4	198 aa		30.44	■■■□□ 2.46
SGSM3-206	ENST00000467915	PEG3	Q9GZU2	1588 aa		30.43	■■■□□ 2.46
SGSM3-206	ENST00000467915	CUX2	O14529	1486 aa		30.39	■■■□□ 2.46
SGSM3-206	ENST00000467915	LAMC3	Q9Y6N6	1575 aa		30.11	■■■□□ 2.41
SGSM3-206	ENST00000467915	WIZ	O95785	1651 aa		30.07	■■■□□ 2.4
SGSM3-206	ENST00000467915	THOC2	Q8NI27	1593 aa	Known RBP	30.03	■■■□□ 2.4
SGSM3-206	ENST00000467915	PDS5B	Q9NTI5	1447 aa		29.98	■■■□□ 2.39
SGSM3-206	ENST00000467915	CADPS	Q9ULU8	1353 aa		29.98	■■■□□ 2.39
SGSM3-206	ENST00000467915	KIF21A	Q7Z4S6	1674 aa		29.95	■■■□□ 2.38
SGSM3-206	ENST00000467915	RSF1	Q96T23	1441 aa	Predicted RBP	29.87	■■■□□ 2.37
SGSM3-206	ENST00000467915	MRC2	Q9UBG0	1479 aa		29.73	■■■□□ 2.35
SGSM3-206	ENST00000467915	TOP2A	P11388	1531 aa	Known RBP	29.66	■■■□□ 2.34
SGSM3-206	ENST00000467915	WDR62	O43379	1518 aa		29.64	■■■□□ 2.34
SGSM3-206	ENST00000467915	CFTR	P13569	1480 aa		29.62	■■■□□ 2.33
SGSM3-206	ENST00000467915	FANCD2	Q9BXW9	1451 aa		29.62	■■■□□ 2.33
SGSM3-206	ENST00000467915	CEP164	Q9UPV0	1460 aa		29.61	■■■□□ 2.33
SGSM3-206	ENST00000467915	URB2	Q14146	1524 aa	Known RBP	29.4	■■■□□ 2.3
SGSM3-206	ENST00000467915	CCDC88B	A6NC98	1476 aa		29.4	■■■□□ 2.3
SGSM3-206	ENST00000467915	PRDM2	Q13029	1718 aa		29.15	■■■□□ 2.26
SGSM3-206	ENST00000467915	TRIM41	Q8WV44	630 aa		29.15	■■■□□ 2.26
SGSM3-206	ENST00000467915	OSCAR	Q8IYS5	282 aa		29.1	■■■□□ 2.25
SGSM3-206	ENST00000467915	TOPBP1	Q92547	1522 aa		29.07	■■■□□ 2.24
SGSM3-206	ENST00000467915	ZNF608	Q9ULD9	1512 aa	Predicted RBP	29.06	■■■□□ 2.24
SGSM3-206	ENST00000467915	IFT140	Q96RY7	1462 aa		29.02	■■■□□ 2.24
SGSM3-206	ENST00000467915	ABCC8	Q09428	1581 aa		28.92	■■■□□ 2.22
SGSM3-206	ENST00000467915	DNMBP	Q6XZF7	1577 aa		28.91	■■■□□ 2.22
SGSM3-206	ENST00000467915	AQR	O60306	1485 aa	Known RBP eCLIP	28.81	■■■□□ 2.2
SGSM3-206	ENST00000467915	EIF4G3	O43432	1585 aa	Known RBP	28.79	■■■□□ 2.2
SGSM3-206	ENST00000467915	TARBP1	Q13395	1621 aa	Known RBP	28.78	■■■□□ 2.2
SGSM3-206	ENST00000467915	POLA1	P09884	1462 aa	Predicted RBP	28.78	■■■□□ 2.2
SGSM3-206	ENST00000467915	RAD54L2	Q9Y4B4	1467 aa		28.74	■■■□□ 2.19
SGSM3-206	ENST00000467915	SOGA1	O94964	1423 aa		28.68	■■■□□ 2.18
SGSM3-206	ENST00000467915	RIMBP3C	A6NJZ7	1639 aa		28.66	■■■□□ 2.18
SGSM3-206	ENST00000467915	RIMBP3B	A6NNM3	1639 aa		28.66	■■■□□ 2.18
SGSM3-206	ENST00000467915	RIMBP3	Q9UFD9	1639 aa		28.66	■■■□□ 2.18
SGSM3-206	ENST00000467915	SUPT5H	O00267	1087 aa	Known RBP	28.66	■■■□□ 2.18
SGSM3-206	ENST00000467915	TDRD9	Q8NDG6	1382 aa	Known RBP	28.65	■■■□□ 2.18
SGSM3-206	ENST00000467915	FBLN2	P98095	1184 aa		28.62	■■■□□ 2.17
SGSM3-206	ENST00000467915	FGD5	Q6ZNL6	1462 aa		28.61	■■■□□ 2.17
SGSM3-206	ENST00000467915	CUX1	P39880	1505 aa		28.61	■■■□□ 2.17
SGSM3-206	ENST00000467915	ARHGEF11	O15085	1522 aa		28.6	■■■□□ 2.17
SGSM3-206	ENST00000467915	CHD1	O14646	1710 aa		28.55	■■■□□ 2.16
SGSM3-206	ENST00000467915	CYB5RL	Q6IPT4	315 aa		28.47	■■■□□ 2.15
SGSM3-206	ENST00000467915	SNAPC4	Q5SXM2	1469 aa		28.46	■■■□□ 2.15
SGSM3-206	ENST00000467915	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.38	■■■□□ 2.13
SGSM3-206	ENST00000467915	GRIN2B	Q13224	1484 aa		28.37	■■■□□ 2.13
SGSM3-206	ENST00000467915	WDR97	A6NE52	1622 aa		28.36	■■■□□ 2.13
SGSM3-206	ENST00000467915	ARAP1	Q96P48	1450 aa		28.35	■■■□□ 2.13
SGSM3-206	ENST00000467915	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.34	■■■□□ 2.13
SGSM3-206	ENST00000467915	GAPVD1	Q14C86	1478 aa		28.29	■■■□□ 2.12
SGSM3-206	ENST00000467915	CLASP1	Q7Z460	1538 aa		28.28	■■■□□ 2.12
SGSM3-206	ENST00000467915	ABCA10	Q8WWZ4	1543 aa		28.27	■■■□□ 2.12
SGSM3-206	ENST00000467915	SYNJ2	O15056	1496 aa		28.27	■■■□□ 2.12
SGSM3-206	ENST00000467915	SYNJ1	O43426	1573 aa		28.2	■■■□□ 2.11
SGSM3-206	ENST00000467915	PBRM1	Q86U86	1689 aa		28.19	■■■□□ 2.1
SGSM3-206	ENST00000467915	ABCA5	Q8WWZ7	1642 aa		28.18	■■■□□ 2.1
SGSM3-206	ENST00000467915	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.17	■■■□□ 2.1
SGSM3-206	ENST00000467915	TRH	P20396	242 aa	Predicted RBP	28.11	■■■□□ 2.09
SGSM3-206	ENST00000467915	TOP2B	Q02880	1626 aa		28.1	■■■□□ 2.09
SGSM3-206	ENST00000467915	BIVM-ERCC5	R4GMW8	1640 aa		28.07	■■■□□ 2.08
SGSM3-206	ENST00000467915	GRIN2A	Q12879	1464 aa		28.02	■■■□□ 2.08
SGSM3-206	ENST00000467915	ADAMTS12	P58397	1594 aa		27.98	■■■□□ 2.07
SGSM3-206	ENST00000467915	CEP170	Q5SW79	1584 aa		27.93	■■■□□ 2.06
SGSM3-206	ENST00000467915	ERCC6L2	Q5T890	1561 aa		27.93	■■■□□ 2.06
SGSM3-206	ENST00000467915	FHAD1	B1AJZ9	1412 aa		27.92	■■■□□ 2.06
SGSM3-206	ENST00000467915	NUP160	Q12769	1436 aa		27.92	■■■□□ 2.06
SGSM3-206	ENST00000467915	ERICH3	Q5RHP9	1530 aa		27.87	■■■□□ 2.05
SGSM3-206	ENST00000467915	SHROOM2	Q13796	1616 aa		27.74	■■■□□ 2.03
SGSM3-206	ENST00000467915	JPH4	Q96JJ6	628 aa		27.7	■■■□□ 2.02
SGSM3-206	ENST00000467915	PRG4	Q92954	1404 aa	Predicted RBP	27.68	■■■□□ 2.02
SGSM3-206	ENST00000467915	IGF1R	P08069	1367 aa		27.65	■■■□□ 2.02
SGSM3-206	ENST00000467915	KIF27	Q86VH2	1401 aa		27.58	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms