RNA–Protein interactions for RNA: ENST00000467847.1

TRIM56-203, Transcript of tripartite motif containing 56, humanhuman

TSL 2

Gene TRIM56, Length 581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-203ENST00000467847 NISCHQ9Y2I1 1504 aa43.3■■■■■ 4.52
TRIM56-203ENST00000467847 CCDC180Q9P1Z9 1646 aa38.89■■■■□ 3.82
TRIM56-203ENST00000467847 ABCC9O60706 1549 aa38.88■■■■□ 3.81
TRIM56-203ENST00000467847 RB1CC1Q8TDY2 1594 aa37.02■■■■□ 3.52
TRIM56-203ENST00000467847 DNAJC5BQ9UF47 199 aa36.92■■■■□ 3.5
TRIM56-203ENST00000467847 NACADO15069 1562 aa36.75■■■■□ 3.47
TRIM56-203ENST00000467847 DCAF8L2P0C7V8 631 aa36.56■■■■□ 3.44
TRIM56-203ENST00000467847 MYO15BQ96JP2 1530 aa36.22■■■■□ 3.39
TRIM56-203ENST00000467847 UNC13AQ9UPW8 1703 aa36.21■■■■□ 3.39
TRIM56-203ENST00000467847 PABPN1Q86U42 306 aaKnown RBP eCLIP36.18■■■■□ 3.38
TRIM56-203ENST00000467847 BICRAQ9NZM4 1560 aa35.92■■■■□ 3.34
TRIM56-203ENST00000467847 ZCCHC6Q5VYS8 1495 aaKnown RBP35.88■■■■□ 3.33
TRIM56-203ENST00000467847 DCAF1Q9Y4B6 1507 aa35.76■■■■□ 3.31
TRIM56-203ENST00000467847 SCRIBQ14160 1630 aa35.44■■■■□ 3.26
TRIM56-203ENST00000467847 SHROOM4Q9ULL8 1493 aa35.44■■■■□ 3.26
TRIM56-203ENST00000467847 CC2D2AQ9P2K1 1620 aa35.14■■■■□ 3.22
TRIM56-203ENST00000467847 EIF4G1Q04637 1599 aaKnown RBP35.04■■■■□ 3.2
TRIM56-203ENST00000467847 CECR2Q9BXF3 1484 aa35.04■■■■□ 3.2
TRIM56-203ENST00000467847 DNAJC5Q9H3Z4 198 aa34.43■■■■□ 3.1
TRIM56-203ENST00000467847 NCAPD3P42695 1498 aa33.9■■■■□ 3.02
TRIM56-203ENST00000467847 ATAD2BQ9ULI0 1458 aa33.81■■■■□ 3
TRIM56-203ENST00000467847 SMARCA4P51532 1647 aa33.79■■■■□ 3
TRIM56-203ENST00000467847 SMARCA2P51531 1590 aa33.74■■■□□ 2.99
TRIM56-203ENST00000467847 CUX2O14529 1486 aa33.71■■■□□ 2.99
TRIM56-203ENST00000467847 HMGXB3Q12766 1538 aa33.68■■■□□ 2.98
TRIM56-203ENST00000467847 ERCC6Q03468 1493 aa33.64■■■□□ 2.98
TRIM56-203ENST00000467847 BAZ1AQ9NRL2 1556 aaPredicted RBP33.62■■■□□ 2.97
TRIM56-203ENST00000467847 BAZ1BQ9UIG0 1483 aaKnown RBP33.5■■■□□ 2.95
TRIM56-203ENST00000467847 PEG3Q9GZU2 1588 aa33.45■■■□□ 2.95
TRIM56-203ENST00000467847 NESP48681 1621 aa33.39■■■□□ 2.94
TRIM56-203ENST00000467847 MROH2BQ7Z745 1585 aa33.36■■■□□ 2.93
TRIM56-203ENST00000467847 LAMC3Q9Y6N6 1575 aa33.17■■■□□ 2.9
TRIM56-203ENST00000467847 THOC2Q8NI27 1593 aaKnown RBP33.07■■■□□ 2.88
TRIM56-203ENST00000467847 KIF21AQ7Z4S6 1674 aa33■■■□□ 2.87
TRIM56-203ENST00000467847 WIZO95785 1651 aa32.98■■■□□ 2.87
TRIM56-203ENST00000467847 PDS5BQ9NTI5 1447 aa32.97■■■□□ 2.87
TRIM56-203ENST00000467847 CADPSQ9ULU8 1353 aa32.87■■■□□ 2.85
TRIM56-203ENST00000467847 TRIM41Q8WV44 630 aa32.78■■■□□ 2.84
TRIM56-203ENST00000467847 MRC2Q9UBG0 1479 aa32.69■■■□□ 2.82
TRIM56-203ENST00000467847 RSF1Q96T23 1441 aaPredicted RBP32.66■■■□□ 2.82
TRIM56-203ENST00000467847 WDR62O43379 1518 aa32.61■■■□□ 2.81
TRIM56-203ENST00000467847 CEP164Q9UPV0 1460 aa32.56■■■□□ 2.8
TRIM56-203ENST00000467847 TOP2AP11388 1531 aaKnown RBP32.56■■■□□ 2.8
TRIM56-203ENST00000467847 FANCD2Q9BXW9 1451 aa32.53■■■□□ 2.8
TRIM56-203ENST00000467847 CFTRP13569 1480 aa32.5■■■□□ 2.79
TRIM56-203ENST00000467847 PRDM2Q13029 1718 aa32.25■■■□□ 2.75
TRIM56-203ENST00000467847 URB2Q14146 1524 aaKnown RBP32.25■■■□□ 2.75
TRIM56-203ENST00000467847 CCDC88BA6NC98 1476 aa32.17■■■□□ 2.74
TRIM56-203ENST00000467847 OSCARQ8IYS5 282 aa32.14■■■□□ 2.74
TRIM56-203ENST00000467847 IFT140Q96RY7 1462 aa31.91■■■□□ 2.7
TRIM56-203ENST00000467847 TOPBP1Q92547 1522 aa31.9■■■□□ 2.7
TRIM56-203ENST00000467847 ZNF608Q9ULD9 1512 aaPredicted RBP31.85■■■□□ 2.69
TRIM56-203ENST00000467847 ABCC8Q09428 1581 aa31.84■■■□□ 2.69
TRIM56-203ENST00000467847 DNMBPQ6XZF7 1577 aa31.8■■■□□ 2.68
TRIM56-203ENST00000467847 EIF4G3O43432 1585 aaKnown RBP31.7■■■□□ 2.67
TRIM56-203ENST00000467847 RIMBP3CA6NJZ7 1639 aa31.68■■■□□ 2.66
TRIM56-203ENST00000467847 RIMBP3BA6NNM3 1639 aa31.68■■■□□ 2.66
TRIM56-203ENST00000467847 RIMBP3Q9UFD9 1639 aa31.68■■■□□ 2.66
TRIM56-203ENST00000467847 TARBP1Q13395 1621 aaKnown RBP31.64■■■□□ 2.65
TRIM56-203ENST00000467847 POLA1P09884 1462 aaPredicted RBP31.58■■■□□ 2.65
TRIM56-203ENST00000467847 AQRO60306 1485 aaKnown RBP eCLIP31.56■■■□□ 2.64
TRIM56-203ENST00000467847 ARHGEF11O15085 1522 aa31.54■■■□□ 2.64
TRIM56-203ENST00000467847 CHD1O14646 1710 aa31.49■■■□□ 2.63
TRIM56-203ENST00000467847 RAD54L2Q9Y4B4 1467 aa31.46■■■□□ 2.63
TRIM56-203ENST00000467847 CYB5RLQ6IPT4 315 aa31.45■■■□□ 2.63
TRIM56-203ENST00000467847 SOGA1O94964 1423 aa31.42■■■□□ 2.62
TRIM56-203ENST00000467847 TRHP20396 242 aaPredicted RBP31.38■■■□□ 2.61
TRIM56-203ENST00000467847 FBLN2P98095 1184 aa31.38■■■□□ 2.61
TRIM56-203ENST00000467847 FGD5Q6ZNL6 1462 aa31.38■■■□□ 2.61
TRIM56-203ENST00000467847 TDRD9Q8NDG6 1382 aaKnown RBP31.37■■■□□ 2.61
TRIM56-203ENST00000467847 CUX1P39880 1505 aa31.35■■■□□ 2.61
TRIM56-203ENST00000467847 WDR97A6NE52 1622 aa31.31■■■□□ 2.6
TRIM56-203ENST00000467847 SNAPC4Q5SXM2 1469 aa31.26■■■□□ 2.59
TRIM56-203ENST00000467847 SUPT5HO00267 1087 aaKnown RBP31.23■■■□□ 2.59
TRIM56-203ENST00000467847 ARAP1Q96P48 1450 aa31.18■■■□□ 2.58
TRIM56-203ENST00000467847 MAGI1Q96QZ7 1491 aaPredicted RBP31.17■■■□□ 2.58
TRIM56-203ENST00000467847 GRIN2BQ13224 1484 aa31.16■■■□□ 2.58
TRIM56-203ENST00000467847 CHMP7Q8WUX9 453 aaPredicted RBP31.13■■■□□ 2.57
TRIM56-203ENST00000467847 SYNJ1O43426 1573 aa31.09■■■□□ 2.57
TRIM56-203ENST00000467847 CLASP1Q7Z460 1538 aa31.08■■■□□ 2.57
TRIM56-203ENST00000467847 PBRM1Q86U86 1689 aa31.08■■■□□ 2.57
TRIM56-203ENST00000467847 SYNJ2O15056 1496 aa31.07■■■□□ 2.56
TRIM56-203ENST00000467847 GAPVD1Q14C86 1478 aa31.06■■■□□ 2.56
TRIM56-203ENST00000467847 ABCA10Q8WWZ4 1543 aa31.02■■■□□ 2.56
TRIM56-203ENST00000467847 ABCA5Q8WWZ7 1642 aa30.99■■■□□ 2.55
TRIM56-203ENST00000467847 AEBP2Q6ZN18 517 aaPredicted RBP30.98■■■□□ 2.55
TRIM56-203ENST00000467847 WRNQ14191 1432 aaPredicted RBP eCLIP30.9■■■□□ 2.54
TRIM56-203ENST00000467847 BIVM-ERCC5R4GMW8 1640 aa30.87■■■□□ 2.53
TRIM56-203ENST00000467847 TOP2BQ02880 1626 aa30.86■■■□□ 2.53
TRIM56-203ENST00000467847 GRIN2AQ12879 1464 aa30.76■■■□□ 2.52
TRIM56-203ENST00000467847 ADAMTS12P58397 1594 aa30.76■■■□□ 2.52
TRIM56-203ENST00000467847 CEP170Q5SW79 1584 aa30.66■■■□□ 2.5
TRIM56-203ENST00000467847 FHAD1B1AJZ9 1412 aa30.65■■■□□ 2.5
TRIM56-203ENST00000467847 NUP160Q12769 1436 aa30.64■■■□□ 2.5
TRIM56-203ENST00000467847 ERICH3Q5RHP9 1530 aa30.64■■■□□ 2.5
TRIM56-203ENST00000467847 ERCC6L2Q5T890 1561 aa30.61■■■□□ 2.49
TRIM56-203ENST00000467847 SHROOM2Q13796 1616 aa30.54■■■□□ 2.48
TRIM56-203ENST00000467847 PRG4Q92954 1404 aaPredicted RBP30.37■■■□□ 2.45
TRIM56-203ENST00000467847 RUSC2Q8N2Y8 1516 aa30.33■■■□□ 2.45
TRIM56-203ENST00000467847 JPH4Q96JJ6 628 aa30.32■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms