RNA–Protein interactions for RNA: ENST00000467824.1

SYN3-209, Transcript of synapsin III, humanhuman

TSL 3

Gene SYN3, Length 523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYN3-209ENST00000467824 NISCHQ9Y2I1 1504 aa24.05■■□□□ 1.44
SYN3-209ENST00000467824 CCDC180Q9P1Z9 1646 aa21.51■■□□□ 1.03
SYN3-209ENST00000467824 ABCC9O60706 1549 aa21.43■■□□□ 1.02
SYN3-209ENST00000467824 RB1CC1Q8TDY2 1594 aa20.43■□□□□ 0.86
SYN3-209ENST00000467824 NACADO15069 1562 aa20.34■□□□□ 0.85
SYN3-209ENST00000467824 DCAF8L2P0C7V8 631 aa20.24■□□□□ 0.83
SYN3-209ENST00000467824 DNAJC5BQ9UF47 199 aa20.15■□□□□ 0.82
SYN3-209ENST00000467824 MYO15BQ96JP2 1530 aa20.12■□□□□ 0.81
SYN3-209ENST00000467824 ZCCHC6Q5VYS8 1495 aaKnown RBP19.97■□□□□ 0.79
SYN3-209ENST00000467824 UNC13AQ9UPW8 1703 aa19.93■□□□□ 0.78
SYN3-209ENST00000467824 PABPN1Q86U42 306 aaKnown RBP eCLIP19.92■□□□□ 0.78
SYN3-209ENST00000467824 DCAF1Q9Y4B6 1507 aa19.91■□□□□ 0.78
SYN3-209ENST00000467824 BICRAQ9NZM4 1560 aa19.77■□□□□ 0.76
SYN3-209ENST00000467824 SHROOM4Q9ULL8 1493 aa19.65■□□□□ 0.74
SYN3-209ENST00000467824 SCRIBQ14160 1630 aa19.58■□□□□ 0.73
SYN3-209ENST00000467824 CC2D2AQ9P2K1 1620 aa19.34■□□□□ 0.69
SYN3-209ENST00000467824 EIF4G1Q04637 1599 aaKnown RBP19.31■□□□□ 0.68
SYN3-209ENST00000467824 CECR2Q9BXF3 1484 aa19.28■□□□□ 0.68
SYN3-209ENST00000467824 NCAPD3P42695 1498 aa18.77■□□□□ 0.6
SYN3-209ENST00000467824 ATAD2BQ9ULI0 1458 aa18.71■□□□□ 0.59
SYN3-209ENST00000467824 SMARCA4P51532 1647 aa18.71■□□□□ 0.58
SYN3-209ENST00000467824 SMARCA2P51531 1590 aa18.7■□□□□ 0.58
SYN3-209ENST00000467824 BAZ1AQ9NRL2 1556 aaPredicted RBP18.68■□□□□ 0.58
SYN3-209ENST00000467824 HMGXB3Q12766 1538 aa18.64■□□□□ 0.58
SYN3-209ENST00000467824 BAZ1BQ9UIG0 1483 aaKnown RBP18.57■□□□□ 0.56
SYN3-209ENST00000467824 PEG3Q9GZU2 1588 aa18.55■□□□□ 0.56
SYN3-209ENST00000467824 DNAJC5Q9H3Z4 198 aa18.54■□□□□ 0.56
SYN3-209ENST00000467824 ERCC6Q03468 1493 aa18.5■□□□□ 0.55
SYN3-209ENST00000467824 MROH2BQ7Z745 1585 aa18.5■□□□□ 0.55
SYN3-209ENST00000467824 CUX2O14529 1486 aa18.43■□□□□ 0.54
SYN3-209ENST00000467824 NESP48681 1621 aa18.38■□□□□ 0.53
SYN3-209ENST00000467824 LAMC3Q9Y6N6 1575 aa18.32■□□□□ 0.52
SYN3-209ENST00000467824 WIZO95785 1651 aa18.25■□□□□ 0.51
SYN3-209ENST00000467824 PDS5BQ9NTI5 1447 aa18.24■□□□□ 0.51
SYN3-209ENST00000467824 THOC2Q8NI27 1593 aaKnown RBP18.22■□□□□ 0.51
SYN3-209ENST00000467824 CADPSQ9ULU8 1353 aa18.21■□□□□ 0.51
SYN3-209ENST00000467824 RSF1Q96T23 1441 aaPredicted RBP18.2■□□□□ 0.5
SYN3-209ENST00000467824 KIF21AQ7Z4S6 1674 aa18.18■□□□□ 0.5
SYN3-209ENST00000467824 TOP2AP11388 1531 aaKnown RBP18.1■□□□□ 0.49
SYN3-209ENST00000467824 MRC2Q9UBG0 1479 aa18.06■□□□□ 0.48
SYN3-209ENST00000467824 CFTRP13569 1480 aa18.02■□□□□ 0.48
SYN3-209ENST00000467824 CEP164Q9UPV0 1460 aa18.02■□□□□ 0.48
SYN3-209ENST00000467824 FANCD2Q9BXW9 1451 aa18■□□□□ 0.47
SYN3-209ENST00000467824 WDR62O43379 1518 aa17.98■□□□□ 0.47
SYN3-209ENST00000467824 CCDC88BA6NC98 1476 aa17.88■□□□□ 0.45
SYN3-209ENST00000467824 URB2Q14146 1524 aaKnown RBP17.81■□□□□ 0.44
SYN3-209ENST00000467824 TRIM41Q8WV44 630 aa17.8■□□□□ 0.44
SYN3-209ENST00000467824 PRDM2Q13029 1718 aa17.76■□□□□ 0.43
SYN3-209ENST00000467824 ABCC8Q09428 1581 aa17.68■□□□□ 0.42
SYN3-209ENST00000467824 IFT140Q96RY7 1462 aa17.66■□□□□ 0.42
SYN3-209ENST00000467824 TOPBP1Q92547 1522 aa17.66■□□□□ 0.42
SYN3-209ENST00000467824 DNMBPQ6XZF7 1577 aa17.61■□□□□ 0.41
SYN3-209ENST00000467824 OSCARQ8IYS5 282 aa17.6■□□□□ 0.41
SYN3-209ENST00000467824 ZNF608Q9ULD9 1512 aaPredicted RBP17.56■□□□□ 0.4
SYN3-209ENST00000467824 SUPT5HO00267 1087 aaKnown RBP17.49■□□□□ 0.39
SYN3-209ENST00000467824 POLA1P09884 1462 aaPredicted RBP17.49■□□□□ 0.39
SYN3-209ENST00000467824 EIF4G3O43432 1585 aaKnown RBP17.48■□□□□ 0.39
SYN3-209ENST00000467824 RIMBP3CA6NJZ7 1639 aa17.46■□□□□ 0.39
SYN3-209ENST00000467824 RIMBP3BA6NNM3 1639 aa17.46■□□□□ 0.39
SYN3-209ENST00000467824 TARBP1Q13395 1621 aaKnown RBP17.46■□□□□ 0.39
SYN3-209ENST00000467824 RIMBP3Q9UFD9 1639 aa17.46■□□□□ 0.39
SYN3-209ENST00000467824 SOGA1O94964 1423 aa17.43■□□□□ 0.38
SYN3-209ENST00000467824 AQRO60306 1485 aaKnown RBP eCLIP17.43■□□□□ 0.38
SYN3-209ENST00000467824 FGD5Q6ZNL6 1462 aa17.39■□□□□ 0.37
SYN3-209ENST00000467824 RAD54L2Q9Y4B4 1467 aa17.39■□□□□ 0.37
SYN3-209ENST00000467824 CUX1P39880 1505 aa17.38■□□□□ 0.37
SYN3-209ENST00000467824 CHD1O14646 1710 aa17.36■□□□□ 0.37
SYN3-209ENST00000467824 TDRD9Q8NDG6 1382 aaKnown RBP17.36■□□□□ 0.37
SYN3-209ENST00000467824 WDR97A6NE52 1622 aa17.36■□□□□ 0.37
SYN3-209ENST00000467824 ARHGEF11O15085 1522 aa17.35■□□□□ 0.37
SYN3-209ENST00000467824 FBLN2P98095 1184 aa17.32■□□□□ 0.36
SYN3-209ENST00000467824 GRIN2BQ13224 1484 aa17.28■□□□□ 0.36
SYN3-209ENST00000467824 SNAPC4Q5SXM2 1469 aa17.27■□□□□ 0.36
SYN3-209ENST00000467824 MAGI1Q96QZ7 1491 aaPredicted RBP17.27■□□□□ 0.36
SYN3-209ENST00000467824 CHMP7Q8WUX9 453 aaPredicted RBP17.24■□□□□ 0.35
SYN3-209ENST00000467824 ABCA10Q8WWZ4 1543 aa17.22■□□□□ 0.35
SYN3-209ENST00000467824 WRNQ14191 1432 aaPredicted RBP eCLIP17.21■□□□□ 0.35
SYN3-209ENST00000467824 GAPVD1Q14C86 1478 aa17.21■□□□□ 0.35
SYN3-209ENST00000467824 SYNJ2O15056 1496 aa17.2■□□□□ 0.34
SYN3-209ENST00000467824 CYB5RLQ6IPT4 315 aa17.19■□□□□ 0.34
SYN3-209ENST00000467824 ARAP1Q96P48 1450 aa17.18■□□□□ 0.34
SYN3-209ENST00000467824 SYNJ1O43426 1573 aa17.17■□□□□ 0.34
SYN3-209ENST00000467824 TOP2BQ02880 1626 aa17.15■□□□□ 0.34
SYN3-209ENST00000467824 ABCA5Q8WWZ7 1642 aa17.14■□□□□ 0.33
SYN3-209ENST00000467824 CLASP1Q7Z460 1538 aa17.13■□□□□ 0.33
SYN3-209ENST00000467824 BIVM-ERCC5R4GMW8 1640 aa17.13■□□□□ 0.33
SYN3-209ENST00000467824 PBRM1Q86U86 1689 aa17.12■□□□□ 0.33
SYN3-209ENST00000467824 TRHP20396 242 aaPredicted RBP17.07■□□□□ 0.32
SYN3-209ENST00000467824 GRIN2AQ12879 1464 aa17.04■□□□□ 0.32
SYN3-209ENST00000467824 FHAD1B1AJZ9 1412 aa17.03■□□□□ 0.32
SYN3-209ENST00000467824 ADAMTS12P58397 1594 aa17.02■□□□□ 0.32
SYN3-209ENST00000467824 ERICH3Q5RHP9 1530 aa17.01■□□□□ 0.31
SYN3-209ENST00000467824 NUP160Q12769 1436 aa16.97■□□□□ 0.31
SYN3-209ENST00000467824 CEP170Q5SW79 1584 aa16.93■□□□□ 0.3
SYN3-209ENST00000467824 KIF27Q86VH2 1401 aa16.87■□□□□ 0.29
SYN3-209ENST00000467824 ERCC6L2Q5T890 1561 aa16.85■□□□□ 0.29
SYN3-209ENST00000467824 SHROOM2Q13796 1616 aa16.85■□□□□ 0.29
SYN3-209ENST00000467824 IGF1RP08069 1367 aa16.81■□□□□ 0.28
SYN3-209ENST00000467824 PRG4Q92954 1404 aaPredicted RBP16.8■□□□□ 0.28
SYN3-209ENST00000467824 JPH4Q96JJ6 628 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms