RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 NISCHQ9Y2I1 1504 aa52.76■■■■■ 6.04
COL9A3-207ENST00000467819 CCDC180Q9P1Z9 1646 aa47.37■■■■■ 5.17
COL9A3-207ENST00000467819 ABCC9O60706 1549 aa47.27■■■■■ 5.16
COL9A3-207ENST00000467819 RB1CC1Q8TDY2 1594 aa45.03■■■■■ 4.8
COL9A3-207ENST00000467819 NACADO15069 1562 aa44.7■■■■■ 4.75
COL9A3-207ENST00000467819 DCAF8L2P0C7V8 631 aa44.5■■■■■ 4.71
COL9A3-207ENST00000467819 DNAJC5BQ9UF47 199 aa44.19■■■■■ 4.66
COL9A3-207ENST00000467819 UNC13AQ9UPW8 1703 aa44.13■■■■■ 4.65
COL9A3-207ENST00000467819 MYO15BQ96JP2 1530 aa44.05■■■■■ 4.64
COL9A3-207ENST00000467819 PABPN1Q86U42 306 aaKnown RBP eCLIP43.98■■■■■ 4.639e-12■■□□□ 12.8
COL9A3-207ENST00000467819 ZCCHC6Q5VYS8 1495 aaKnown RBP43.75■■■■■ 4.59
COL9A3-207ENST00000467819 BICRAQ9NZM4 1560 aa43.71■■■■■ 4.59
COL9A3-207ENST00000467819 DCAF1Q9Y4B6 1507 aa43.54■■■■■ 4.56
COL9A3-207ENST00000467819 SCRIBQ14160 1630 aa43.2■■■■■ 4.51
COL9A3-207ENST00000467819 SHROOM4Q9ULL8 1493 aa43.06■■■■■ 4.48
COL9A3-207ENST00000467819 CC2D2AQ9P2K1 1620 aa42.71■■■■■ 4.43
COL9A3-207ENST00000467819 EIF4G1Q04637 1599 aaKnown RBP42.63■■■■■ 4.41
COL9A3-207ENST00000467819 CECR2Q9BXF3 1484 aa42.55■■■■■ 4.4
COL9A3-207ENST00000467819 NCAPD3P42695 1498 aa41.22■■■■■ 4.19
COL9A3-207ENST00000467819 SMARCA4P51532 1647 aa41.18■■■■■ 4.18
COL9A3-207ENST00000467819 ATAD2BQ9ULI0 1458 aa41.14■■■■■ 4.18
COL9A3-207ENST00000467819 SMARCA2P51531 1590 aa41.06■■■■■ 4.16
COL9A3-207ENST00000467819 HMGXB3Q12766 1538 aa40.98■■■■■ 4.15
COL9A3-207ENST00000467819 BAZ1AQ9NRL2 1556 aaPredicted RBP40.95■■■■■ 4.15
COL9A3-207ENST00000467819 ERCC6Q03468 1493 aa40.81■■■■■ 4.12
COL9A3-207ENST00000467819 BAZ1BQ9UIG0 1483 aaKnown RBP40.78■■■■■ 4.12
COL9A3-207ENST00000467819 PEG3Q9GZU2 1588 aa40.74■■■■■ 4.11
COL9A3-207ENST00000467819 MROH2BQ7Z745 1585 aa40.67■■■■■ 4.1
COL9A3-207ENST00000467819 CUX2O14529 1486 aa40.66■■■■■ 4.1
COL9A3-207ENST00000467819 NESP48681 1621 aa40.64■■■■■ 4.1
COL9A3-207ENST00000467819 DNAJC5Q9H3Z4 198 aa40.49■■■■■ 4.07
COL9A3-207ENST00000467819 LAMC3Q9Y6N6 1575 aa40.35■■■■■ 4.05
COL9A3-207ENST00000467819 WIZO95785 1651 aa40.24■■■■■ 4.03
COL9A3-207ENST00000467819 THOC2Q8NI27 1593 aaKnown RBP40.23■■■■■ 4.03
COL9A3-207ENST00000467819 KIF21AQ7Z4S6 1674 aa40.2■■■■■ 4.03
COL9A3-207ENST00000467819 PDS5BQ9NTI5 1447 aa40.07■■■■■ 4
COL9A3-207ENST00000467819 CADPSQ9ULU8 1353 aa39.97■■■■□ 3.99
COL9A3-207ENST00000467819 RSF1Q96T23 1441 aaPredicted RBP39.82■■■■□ 3.96
COL9A3-207ENST00000467819 MRC2Q9UBG0 1479 aa39.75■■■■□ 3.95
COL9A3-207ENST00000467819 TOP2AP11388 1531 aaKnown RBP39.7■■■■□ 3.95
COL9A3-207ENST00000467819 WDR62O43379 1518 aa39.65■■■■□ 3.94
COL9A3-207ENST00000467819 CEP164Q9UPV0 1460 aa39.62■■■■□ 3.93
COL9A3-207ENST00000467819 FANCD2Q9BXW9 1451 aa39.57■■■■□ 3.93
COL9A3-207ENST00000467819 CFTRP13569 1480 aa39.56■■■■□ 3.92
COL9A3-207ENST00000467819 PRDM2Q13029 1718 aa39.34■■■■□ 3.89
COL9A3-207ENST00000467819 URB2Q14146 1524 aaKnown RBP39.25■■■■□ 3.87
COL9A3-207ENST00000467819 CCDC88BA6NC98 1476 aa39.22■■■■□ 3.87
COL9A3-207ENST00000467819 TOPBP1Q92547 1522 aa38.84■■■■□ 3.81
COL9A3-207ENST00000467819 TRIM41Q8WV44 630 aa38.84■■■■□ 3.81
COL9A3-207ENST00000467819 IFT140Q96RY7 1462 aa38.79■■■■□ 3.8
COL9A3-207ENST00000467819 OSCARQ8IYS5 282 aa38.78■■■■□ 3.8
COL9A3-207ENST00000467819 ZNF608Q9ULD9 1512 aaPredicted RBP38.76■■■■□ 3.8
COL9A3-207ENST00000467819 DNMBPQ6XZF7 1577 aa38.73■■■■□ 3.79
COL9A3-207ENST00000467819 ABCC8Q09428 1581 aa38.72■■■■□ 3.79
COL9A3-207ENST00000467819 EIF4G3O43432 1585 aaKnown RBP38.61■■■■□ 3.77
COL9A3-207ENST00000467819 TARBP1Q13395 1621 aaKnown RBP38.52■■■■□ 3.76
COL9A3-207ENST00000467819 POLA1P09884 1462 aaPredicted RBP38.45■■■■□ 3.75
COL9A3-207ENST00000467819 AQRO60306 1485 aaKnown RBP eCLIP38.4■■■■□ 3.746e-6■■■■□ 23.2
COL9A3-207ENST00000467819 RIMBP3CA6NJZ7 1639 aa38.38■■■■□ 3.74
COL9A3-207ENST00000467819 RIMBP3BA6NNM3 1639 aa38.38■■■■□ 3.74
COL9A3-207ENST00000467819 RIMBP3Q9UFD9 1639 aa38.38■■■■□ 3.74
COL9A3-207ENST00000467819 CHD1O14646 1710 aa38.35■■■■□ 3.73
COL9A3-207ENST00000467819 RAD54L2Q9Y4B4 1467 aa38.31■■■■□ 3.72
COL9A3-207ENST00000467819 SOGA1O94964 1423 aa38.25■■■■□ 3.71
COL9A3-207ENST00000467819 ARHGEF11O15085 1522 aa38.23■■■■□ 3.71
COL9A3-207ENST00000467819 FGD5Q6ZNL6 1462 aa38.23■■■■□ 3.71
COL9A3-207ENST00000467819 CUX1P39880 1505 aa38.22■■■■□ 3.71
COL9A3-207ENST00000467819 TDRD9Q8NDG6 1382 aaKnown RBP38.17■■■■□ 3.7
COL9A3-207ENST00000467819 SUPT5HO00267 1087 aaKnown RBP38.16■■■■□ 3.7
COL9A3-207ENST00000467819 FBLN2P98095 1184 aa38.14■■■■□ 3.7
COL9A3-207ENST00000467819 WDR97A6NE52 1622 aa38.1■■■■□ 3.69
COL9A3-207ENST00000467819 SNAPC4Q5SXM2 1469 aa38.04■■■■□ 3.68
COL9A3-207ENST00000467819 GRIN2BQ13224 1484 aa37.92■■■■□ 3.66
COL9A3-207ENST00000467819 MAGI1Q96QZ7 1491 aaPredicted RBP37.91■■■■□ 3.66
COL9A3-207ENST00000467819 CYB5RLQ6IPT4 315 aa37.91■■■■□ 3.66
COL9A3-207ENST00000467819 PBRM1Q86U86 1689 aa37.9■■■■□ 3.66
COL9A3-207ENST00000467819 ARAP1Q96P48 1450 aa37.86■■■■□ 3.65
COL9A3-207ENST00000467819 CHMP7Q8WUX9 453 aaPredicted RBP37.84■■■■□ 3.65
COL9A3-207ENST00000467819 SYNJ1O43426 1573 aa37.82■■■■□ 3.65
COL9A3-207ENST00000467819 CLASP1Q7Z460 1538 aa37.82■■■■□ 3.64
COL9A3-207ENST00000467819 GAPVD1Q14C86 1478 aa37.8■■■■□ 3.64
COL9A3-207ENST00000467819 SYNJ2O15056 1496 aa37.78■■■■□ 3.64
COL9A3-207ENST00000467819 ABCA10Q8WWZ4 1543 aa37.77■■■■□ 3.64
COL9A3-207ENST00000467819 ABCA5Q8WWZ7 1642 aa37.76■■■■□ 3.64
COL9A3-207ENST00000467819 BIVM-ERCC5R4GMW8 1640 aa37.67■■■■□ 3.62
COL9A3-207ENST00000467819 TOP2BQ02880 1626 aa37.63■■■■□ 3.61
COL9A3-207ENST00000467819 WRNQ14191 1432 aaPredicted RBP eCLIP37.62■■■■□ 3.61
COL9A3-207ENST00000467819 ADAMTS12P58397 1594 aa37.48■■■■□ 3.59
COL9A3-207ENST00000467819 TRHP20396 242 aaPredicted RBP37.48■■■■□ 3.59
COL9A3-207ENST00000467819 GRIN2AQ12879 1464 aa37.45■■■■□ 3.59
COL9A3-207ENST00000467819 CEP170Q5SW79 1584 aa37.34■■■■□ 3.57
COL9A3-207ENST00000467819 ERICH3Q5RHP9 1530 aa37.31■■■■□ 3.56
COL9A3-207ENST00000467819 FHAD1B1AJZ9 1412 aa37.31■■■■□ 3.56
COL9A3-207ENST00000467819 NUP160Q12769 1436 aa37.28■■■■□ 3.56
COL9A3-207ENST00000467819 ERCC6L2Q5T890 1561 aa37.27■■■■□ 3.56
COL9A3-207ENST00000467819 SHROOM2Q13796 1616 aa37.17■■■■□ 3.54
COL9A3-207ENST00000467819 RUSC2Q8N2Y8 1516 aa36.95■■■■□ 3.51
COL9A3-207ENST00000467819 PRG4Q92954 1404 aaPredicted RBP36.93■■■■□ 3.5
COL9A3-207ENST00000467819 JPH4Q96JJ6 628 aa36.88■■■■□ 3.49
COL9A3-207ENST00000467819 KIF27Q86VH2 1401 aa36.85■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms