RNA–Protein interactions for RNA: ENST00000467366.1

PTPRE-206, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 338 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-206ENST00000467366 NISCHQ9Y2I1 1504 aa16.84■□□□□ 0.29
PTPRE-206ENST00000467366 ABCC9O60706 1549 aa16.02■□□□□ 0.15
PTPRE-206ENST00000467366 DNAJC5BQ9UF47 199 aa15.6■□□□□ 0.09
PTPRE-206ENST00000467366 CCDC180Q9P1Z9 1646 aa15.4■□□□□ 0.06
PTPRE-206ENST00000467366 RB1CC1Q8TDY2 1594 aa14.94□□□□□ -0.02
PTPRE-206ENST00000467366 PABPN1Q86U42 306 aaKnown RBP eCLIP14.79□□□□□ -0.04
PTPRE-206ENST00000467366 DNAJC5Q9H3Z4 198 aa14.73□□□□□ -0.05
PTPRE-206ENST00000467366 UNC13AQ9UPW8 1703 aa14.7□□□□□ -0.06
PTPRE-206ENST00000467366 NACADO15069 1562 aa14.68□□□□□ -0.06
PTPRE-206ENST00000467366 BICRAQ9NZM4 1560 aa14.59□□□□□ -0.07
PTPRE-206ENST00000467366 CECR2Q9BXF3 1484 aa14.47□□□□□ -0.09
PTPRE-206ENST00000467366 DCAF8L2P0C7V8 631 aa14.46□□□□□ -0.09
PTPRE-206ENST00000467366 CC2D2AQ9P2K1 1620 aa14.44□□□□□ -0.1
PTPRE-206ENST00000467366 EIF4G1Q04637 1599 aaKnown RBP14.25□□□□□ -0.13
PTPRE-206ENST00000467366 MYO15BQ96JP2 1530 aa14.25□□□□□ -0.13
PTPRE-206ENST00000467366 SHROOM4Q9ULL8 1493 aa14.22□□□□□ -0.13
PTPRE-206ENST00000467366 CUX2O14529 1486 aa14.02□□□□□ -0.16
PTPRE-206ENST00000467366 SCRIBQ14160 1630 aa14.01□□□□□ -0.17
PTPRE-206ENST00000467366 DCAF1Q9Y4B6 1507 aa13.85□□□□□ -0.19
PTPRE-206ENST00000467366 TRIM41Q8WV44 630 aa13.84□□□□□ -0.19
PTPRE-206ENST00000467366 ERCC6Q03468 1493 aa13.83□□□□□ -0.2
PTPRE-206ENST00000467366 ZCCHC6Q5VYS8 1495 aaKnown RBP13.82□□□□□ -0.2
PTPRE-206ENST00000467366 NESP48681 1621 aa13.6□□□□□ -0.23
PTPRE-206ENST00000467366 THOC2Q8NI27 1593 aaKnown RBP13.59□□□□□ -0.23
PTPRE-206ENST00000467366 NCAPD3P42695 1498 aa13.55□□□□□ -0.24
PTPRE-206ENST00000467366 SMARCA2P51531 1590 aa13.45□□□□□ -0.26
PTPRE-206ENST00000467366 ATAD2BQ9ULI0 1458 aa13.44□□□□□ -0.26
PTPRE-206ENST00000467366 KIF21AQ7Z4S6 1674 aa13.44□□□□□ -0.26
PTPRE-206ENST00000467366 HMGXB3Q12766 1538 aa13.41□□□□□ -0.26
PTPRE-206ENST00000467366 LAMC3Q9Y6N6 1575 aa13.37□□□□□ -0.27
PTPRE-206ENST00000467366 BAZ1AQ9NRL2 1556 aaPredicted RBP13.36□□□□□ -0.27
PTPRE-206ENST00000467366 SMARCA4P51532 1647 aa13.29□□□□□ -0.28
PTPRE-206ENST00000467366 PDS5BQ9NTI5 1447 aa13.27□□□□□ -0.29
PTPRE-206ENST00000467366 BAZ1BQ9UIG0 1483 aaKnown RBP13.27□□□□□ -0.29
PTPRE-206ENST00000467366 OSCARQ8IYS5 282 aa13.25□□□□□ -0.29
PTPRE-206ENST00000467366 RIMBP3CA6NJZ7 1639 aa13.24□□□□□ -0.29
PTPRE-206ENST00000467366 RIMBP3BA6NNM3 1639 aa13.24□□□□□ -0.29
PTPRE-206ENST00000467366 RIMBP3Q9UFD9 1639 aa13.24□□□□□ -0.29
PTPRE-206ENST00000467366 WDR62O43379 1518 aa13.23□□□□□ -0.29
PTPRE-206ENST00000467366 MRC2Q9UBG0 1479 aa13.22□□□□□ -0.29
PTPRE-206ENST00000467366 PEG3Q9GZU2 1588 aa13.15□□□□□ -0.3
PTPRE-206ENST00000467366 AEBP2Q6ZN18 517 aaPredicted RBP13.13□□□□□ -0.31
PTPRE-206ENST00000467366 CADPSQ9ULU8 1353 aa13.1□□□□□ -0.31
PTPRE-206ENST00000467366 ARHGEF11O15085 1522 aa13.1□□□□□ -0.31
PTPRE-206ENST00000467366 TRHP20396 242 aaPredicted RBP13.07□□□□□ -0.32
PTPRE-206ENST00000467366 CEP164Q9UPV0 1460 aa13.04□□□□□ -0.32
PTPRE-206ENST00000467366 CYB5RLQ6IPT4 315 aa13.01□□□□□ -0.33
PTPRE-206ENST00000467366 MROH2BQ7Z745 1585 aa12.99□□□□□ -0.33
PTPRE-206ENST00000467366 FANCD2Q9BXW9 1451 aa12.97□□□□□ -0.33
PTPRE-206ENST00000467366 URB2Q14146 1524 aaKnown RBP12.93□□□□□ -0.34
PTPRE-206ENST00000467366 ARAP1Q96P48 1450 aa12.93□□□□□ -0.34
PTPRE-206ENST00000467366 ZNF608Q9ULD9 1512 aaPredicted RBP12.88□□□□□ -0.35
PTPRE-206ENST00000467366 CHD1O14646 1710 aa12.84□□□□□ -0.35
PTPRE-206ENST00000467366 CFTRP13569 1480 aa12.84□□□□□ -0.35
PTPRE-206ENST00000467366 WIZO95785 1651 aa12.83□□□□□ -0.35
PTPRE-206ENST00000467366 EIF4G3O43432 1585 aaKnown RBP12.79□□□□□ -0.36
PTPRE-206ENST00000467366 IFT140Q96RY7 1462 aa12.78□□□□□ -0.36
PTPRE-206ENST00000467366 RSF1Q96T23 1441 aaPredicted RBP12.78□□□□□ -0.36
PTPRE-206ENST00000467366 PRDM2Q13029 1718 aa12.72□□□□□ -0.37
PTPRE-206ENST00000467366 ILDR1Q86SU0 546 aaPredicted RBP12.72□□□□□ -0.37
PTPRE-206ENST00000467366 FBLN2P98095 1184 aa12.68□□□□□ -0.38
PTPRE-206ENST00000467366 AQRO60306 1485 aaKnown RBP eCLIP12.67□□□□□ -0.38
PTPRE-206ENST00000467366 TOPBP1Q92547 1522 aa12.67□□□□□ -0.38
PTPRE-206ENST00000467366 CLASP1Q7Z460 1538 aa12.64□□□□□ -0.39
PTPRE-206ENST00000467366 TARBP1Q13395 1621 aaKnown RBP12.64□□□□□ -0.39
PTPRE-206ENST00000467366 TOP2AP11388 1531 aaKnown RBP12.57□□□□□ -0.4
PTPRE-206ENST00000467366 DNMBPQ6XZF7 1577 aa12.57□□□□□ -0.4
PTPRE-206ENST00000467366 SYNJ1O43426 1573 aa12.55□□□□□ -0.4
PTPRE-206ENST00000467366 ABCC8Q09428 1581 aa12.55□□□□□ -0.4
PTPRE-206ENST00000467366 GAPVD1Q14C86 1478 aa12.53□□□□□ -0.4
PTPRE-206ENST00000467366 SNAPC4Q5SXM2 1469 aa12.52□□□□□ -0.41
PTPRE-206ENST00000467366 POLA1P09884 1462 aaPredicted RBP12.5□□□□□ -0.41
PTPRE-206ENST00000467366 KIF13AQ9H1H9 1805 aa12.49□□□□□ -0.41
PTPRE-206ENST00000467366 RAD54L2Q9Y4B4 1467 aa12.48□□□□□ -0.41
PTPRE-206ENST00000467366 TDRD9Q8NDG6 1382 aaKnown RBP12.48□□□□□ -0.41
PTPRE-206ENST00000467366 CHMP7Q8WUX9 453 aaPredicted RBP12.46□□□□□ -0.41
PTPRE-206ENST00000467366 KDM4FA0A1W2PPD8 638 aa12.45□□□□□ -0.42
PTPRE-206ENST00000467366 CCDC88BA6NC98 1476 aa12.45□□□□□ -0.42
PTPRE-206ENST00000467366 ERCC6L2Q5T890 1561 aa12.43□□□□□ -0.42
PTPRE-206ENST00000467366 MAGI1Q96QZ7 1491 aaPredicted RBP12.43□□□□□ -0.42
PTPRE-206ENST00000467366 SYNJ2O15056 1496 aa12.41□□□□□ -0.42
PTPRE-206ENST00000467366 SOGA1O94964 1423 aa12.41□□□□□ -0.42
PTPRE-206ENST00000467366 WDR97A6NE52 1622 aa12.4□□□□□ -0.42
PTPRE-206ENST00000467366 GRIN2BQ13224 1484 aa12.37□□□□□ -0.43
PTPRE-206ENST00000467366 PBRM1Q86U86 1689 aa12.35□□□□□ -0.43
PTPRE-206ENST00000467366 FGD5Q6ZNL6 1462 aa12.34□□□□□ -0.43
PTPRE-206ENST00000467366 CEP170Q5SW79 1584 aa12.31□□□□□ -0.44
PTPRE-206ENST00000467366 KDM6BO15054 1643 aa12.3□□□□□ -0.44
PTPRE-206ENST00000467366 ABCC10Q5T3U5 1492 aa12.27□□□□□ -0.45
PTPRE-206ENST00000467366 SHROOM2Q13796 1616 aa12.26□□□□□ -0.45
PTPRE-206ENST00000467366 FAM69CQ0P6D2 419 aa12.26□□□□□ -0.45
PTPRE-206ENST00000467366 HECW2Q9P2P5 1572 aa12.26□□□□□ -0.45
PTPRE-206ENST00000467366 DIP2BQ9P265 1576 aa12.25□□□□□ -0.45
PTPRE-206ENST00000467366 CUX1P39880 1505 aa12.23□□□□□ -0.45
PTPRE-206ENST00000467366 GRIN2AQ12879 1464 aa12.23□□□□□ -0.45
PTPRE-206ENST00000467366 ABCA5Q8WWZ7 1642 aa12.22□□□□□ -0.45
PTPRE-206ENST00000467366 TSPOAP1O95153 1857 aa12.21□□□□□ -0.45
PTPRE-206ENST00000467366 NUP160Q12769 1436 aa12.2□□□□□ -0.46
PTPRE-206ENST00000467366 ADGRL1O94910 1474 aa12.2□□□□□ -0.46
PTPRE-206ENST00000467366 MAPKBP1O60336 1514 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms