RNA–Protein interactions for RNA: ENST00000467343.1

CRAT-209, Transcript of carnitine O-acetyltransferase, humanhuman

TSL 5

Gene CRAT, Length 399 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRAT-209ENST00000467343 NISCHQ9Y2I1 1504 aa30.1■■■□□ 2.41
CRAT-209ENST00000467343 CCDC180Q9P1Z9 1646 aa26.89■■□□□ 1.9
CRAT-209ENST00000467343 ABCC9O60706 1549 aa26.66■■□□□ 1.86
CRAT-209ENST00000467343 DCAF8L2P0C7V8 631 aa25.52■■□□□ 1.68
CRAT-209ENST00000467343 RB1CC1Q8TDY2 1594 aa25.49■■□□□ 1.67
CRAT-209ENST00000467343 NACADO15069 1562 aa25.35■■□□□ 1.65
CRAT-209ENST00000467343 DNAJC5BQ9UF47 199 aa25.01■■□□□ 1.59
CRAT-209ENST00000467343 ZCCHC6Q5VYS8 1495 aaKnown RBP25.01■■□□□ 1.59
CRAT-209ENST00000467343 MYO15BQ96JP2 1530 aa25■■□□□ 1.59
CRAT-209ENST00000467343 PABPN1Q86U42 306 aaKnown RBP eCLIP24.88■■□□□ 1.57
CRAT-209ENST00000467343 UNC13AQ9UPW8 1703 aa24.88■■□□□ 1.57
CRAT-209ENST00000467343 DCAF1Q9Y4B6 1507 aa24.81■■□□□ 1.56
CRAT-209ENST00000467343 SCRIBQ14160 1630 aa24.64■■□□□ 1.53
CRAT-209ENST00000467343 BICRAQ9NZM4 1560 aa24.62■■□□□ 1.53
CRAT-209ENST00000467343 SHROOM4Q9ULL8 1493 aa24.33■■□□□ 1.49
CRAT-209ENST00000467343 EIF4G1Q04637 1599 aaKnown RBP24.07■■□□□ 1.44
CRAT-209ENST00000467343 CC2D2AQ9P2K1 1620 aa24.06■■□□□ 1.44
CRAT-209ENST00000467343 CECR2Q9BXF3 1484 aa23.95■■□□□ 1.42
CRAT-209ENST00000467343 SMARCA4P51532 1647 aa23.45■■□□□ 1.34
CRAT-209ENST00000467343 BAZ1AQ9NRL2 1556 aaPredicted RBP23.4■■□□□ 1.34
CRAT-209ENST00000467343 ATAD2BQ9ULI0 1458 aa23.36■■□□□ 1.33
CRAT-209ENST00000467343 SMARCA2P51531 1590 aa23.35■■□□□ 1.33
CRAT-209ENST00000467343 NCAPD3P42695 1498 aa23.33■■□□□ 1.33
CRAT-209ENST00000467343 BAZ1BQ9UIG0 1483 aaKnown RBP23.24■■□□□ 1.31
CRAT-209ENST00000467343 HMGXB3Q12766 1538 aa23.23■■□□□ 1.31
CRAT-209ENST00000467343 MROH2BQ7Z745 1585 aa23.21■■□□□ 1.31
CRAT-209ENST00000467343 DNAJC5Q9H3Z4 198 aa23.14■■□□□ 1.29
CRAT-209ENST00000467343 PEG3Q9GZU2 1588 aa23.12■■□□□ 1.29
CRAT-209ENST00000467343 ERCC6Q03468 1493 aa23.07■■□□□ 1.28
CRAT-209ENST00000467343 WIZO95785 1651 aa23■■□□□ 1.27
CRAT-209ENST00000467343 NESP48681 1621 aa22.94■■□□□ 1.26
CRAT-209ENST00000467343 LAMC3Q9Y6N6 1575 aa22.84■■□□□ 1.25
CRAT-209ENST00000467343 RSF1Q96T23 1441 aaPredicted RBP22.82■■□□□ 1.24
CRAT-209ENST00000467343 CUX2O14529 1486 aa22.79■■□□□ 1.24
CRAT-209ENST00000467343 PDS5BQ9NTI5 1447 aa22.73■■□□□ 1.23
CRAT-209ENST00000467343 TOP2AP11388 1531 aaKnown RBP22.71■■□□□ 1.23
CRAT-209ENST00000467343 CADPSQ9ULU8 1353 aa22.7■■□□□ 1.22
CRAT-209ENST00000467343 KIF21AQ7Z4S6 1674 aa22.7■■□□□ 1.22
CRAT-209ENST00000467343 THOC2Q8NI27 1593 aaKnown RBP22.63■■□□□ 1.21
CRAT-209ENST00000467343 CEP164Q9UPV0 1460 aa22.51■■□□□ 1.19
CRAT-209ENST00000467343 MRC2Q9UBG0 1479 aa22.5■■□□□ 1.19
CRAT-209ENST00000467343 FANCD2Q9BXW9 1451 aa22.48■■□□□ 1.19
CRAT-209ENST00000467343 CFTRP13569 1480 aa22.47■■□□□ 1.19
CRAT-209ENST00000467343 CCDC88BA6NC98 1476 aa22.44■■□□□ 1.18
CRAT-209ENST00000467343 WDR62O43379 1518 aa22.38■■□□□ 1.17
CRAT-209ENST00000467343 PRDM2Q13029 1718 aa22.37■■□□□ 1.17
CRAT-209ENST00000467343 SUPT5HO00267 1087 aaKnown RBP22.27■■□□□ 1.16
CRAT-209ENST00000467343 URB2Q14146 1524 aaKnown RBP22.23■■□□□ 1.15
CRAT-209ENST00000467343 TRIM41Q8WV44 630 aa22.08■■□□□ 1.13
CRAT-209ENST00000467343 TOPBP1Q92547 1522 aa22.07■■□□□ 1.12
CRAT-209ENST00000467343 ABCC8Q09428 1581 aa22.06■■□□□ 1.12
CRAT-209ENST00000467343 DNMBPQ6XZF7 1577 aa22.04■■□□□ 1.12
CRAT-209ENST00000467343 IFT140Q96RY7 1462 aa22.01■■□□□ 1.11
CRAT-209ENST00000467343 ZNF608Q9ULD9 1512 aaPredicted RBP21.92■■□□□ 1.1
CRAT-209ENST00000467343 POLA1P09884 1462 aaPredicted RBP21.86■■□□□ 1.09
CRAT-209ENST00000467343 EIF4G3O43432 1585 aaKnown RBP21.86■■□□□ 1.09
CRAT-209ENST00000467343 OSCARQ8IYS5 282 aa21.85■■□□□ 1.09
CRAT-209ENST00000467343 SOGA1O94964 1423 aa21.81■■□□□ 1.08
CRAT-209ENST00000467343 TARBP1Q13395 1621 aaKnown RBP21.81■■□□□ 1.08
CRAT-209ENST00000467343 FGD5Q6ZNL6 1462 aa21.8■■□□□ 1.08
CRAT-209ENST00000467343 RAD54L2Q9Y4B4 1467 aa21.8■■□□□ 1.08
CRAT-209ENST00000467343 CUX1P39880 1505 aa21.8■■□□□ 1.08
CRAT-209ENST00000467343 AQRO60306 1485 aaKnown RBP eCLIP21.78■■□□□ 1.08
CRAT-209ENST00000467343 FBLN2P98095 1184 aa21.74■■□□□ 1.07
CRAT-209ENST00000467343 TDRD9Q8NDG6 1382 aaKnown RBP21.72■■□□□ 1.07
CRAT-209ENST00000467343 CHD1O14646 1710 aa21.66■■□□□ 1.06
CRAT-209ENST00000467343 WDR97A6NE52 1622 aa21.63■■□□□ 1.05
CRAT-209ENST00000467343 SNAPC4Q5SXM2 1469 aa21.61■■□□□ 1.05
CRAT-209ENST00000467343 WRNQ14191 1432 aaPredicted RBP eCLIP21.6■■□□□ 1.05
CRAT-209ENST00000467343 GRIN2BQ13224 1484 aa21.58■■□□□ 1.04
CRAT-209ENST00000467343 CHMP7Q8WUX9 453 aaPredicted RBP21.56■■□□□ 1.04
CRAT-209ENST00000467343 PBRM1Q86U86 1689 aa21.56■■□□□ 1.04
CRAT-209ENST00000467343 GAPVD1Q14C86 1478 aa21.55■■□□□ 1.04
CRAT-209ENST00000467343 TOP2BQ02880 1626 aa21.55■■□□□ 1.04
CRAT-209ENST00000467343 BIVM-ERCC5R4GMW8 1640 aa21.55■■□□□ 1.04
CRAT-209ENST00000467343 SYNJ1O43426 1573 aa21.54■■□□□ 1.04
CRAT-209ENST00000467343 ABCA10Q8WWZ4 1543 aa21.53■■□□□ 1.04
CRAT-209ENST00000467343 MAGI1Q96QZ7 1491 aaPredicted RBP21.52■■□□□ 1.04
CRAT-209ENST00000467343 RIMBP3CA6NJZ7 1639 aa21.51■■□□□ 1.03
CRAT-209ENST00000467343 RIMBP3BA6NNM3 1639 aa21.51■■□□□ 1.03
CRAT-209ENST00000467343 RIMBP3Q9UFD9 1639 aa21.51■■□□□ 1.03
CRAT-209ENST00000467343 ABCA5Q8WWZ7 1642 aa21.47■■□□□ 1.03
CRAT-209ENST00000467343 ARHGEF11O15085 1522 aa21.46■■□□□ 1.03
CRAT-209ENST00000467343 SYNJ2O15056 1496 aa21.45■■□□□ 1.02
CRAT-209ENST00000467343 CYB5RLQ6IPT4 315 aa21.36■■□□□ 1.01
CRAT-209ENST00000467343 ADAMTS12P58397 1594 aa21.32■■□□□ 1
CRAT-209ENST00000467343 CLASP1Q7Z460 1538 aa21.32■■□□□ 1
CRAT-209ENST00000467343 ERICH3Q5RHP9 1530 aa21.29■■□□□ 1
CRAT-209ENST00000467343 GRIN2AQ12879 1464 aa21.28■■□□□ 1
CRAT-209ENST00000467343 FHAD1B1AJZ9 1412 aa21.28■■□□□ 1
CRAT-209ENST00000467343 ARAP1Q96P48 1450 aa21.26■□□□□ 0.99
CRAT-209ENST00000467343 KIF27Q86VH2 1401 aa21.19■□□□□ 0.98
CRAT-209ENST00000467343 CEP170Q5SW79 1584 aa21.19■□□□□ 0.98
CRAT-209ENST00000467343 NUP160Q12769 1436 aa21.14■□□□□ 0.98
CRAT-209ENST00000467343 TRHP20396 242 aaPredicted RBP21.12■□□□□ 0.97
CRAT-209ENST00000467343 CUL7Q14999 1698 aa21.09■□□□□ 0.97
CRAT-209ENST00000467343 IGF1RP08069 1367 aa21.05■□□□□ 0.96
CRAT-209ENST00000467343 ERCC6L2Q5T890 1561 aa21.04■□□□□ 0.96
CRAT-209ENST00000467343 SHROOM2Q13796 1616 aa21■□□□□ 0.95
CRAT-209ENST00000467343 RUSC2Q8N2Y8 1516 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms