RNA–Protein interactions for RNA: ENST00000467319.1

MSH5-212, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-212ENST00000467319 NISCHQ9Y2I1 1504 aa26.97■■□□□ 1.91
MSH5-212ENST00000467319 CCDC180Q9P1Z9 1646 aa24.01■■□□□ 1.43
MSH5-212ENST00000467319 ABCC9O60706 1549 aa23.23■■□□□ 1.31
MSH5-212ENST00000467319 ZCCHC6Q5VYS8 1495 aaKnown RBP22.55■■□□□ 1.2
MSH5-212ENST00000467319 NACADO15069 1562 aa22.48■■□□□ 1.19
MSH5-212ENST00000467319 MYO15BQ96JP2 1530 aa22.46■■□□□ 1.19
MSH5-212ENST00000467319 RB1CC1Q8TDY2 1594 aa22.46■■□□□ 1.19
MSH5-212ENST00000467319 DCAF1Q9Y4B6 1507 aa22.39■■□□□ 1.17
MSH5-212ENST00000467319 DCAF8L2P0C7V8 631 aa22.18■■□□□ 1.14
MSH5-212ENST00000467319 UNC13AQ9UPW8 1703 aa22■■□□□ 1.11
MSH5-212ENST00000467319 BICRAQ9NZM4 1560 aa21.83■■□□□ 1.09
MSH5-212ENST00000467319 SCRIBQ14160 1630 aa21.83■■□□□ 1.08
MSH5-212ENST00000467319 SHROOM4Q9ULL8 1493 aa21.66■■□□□ 1.06
MSH5-212ENST00000467319 PABPN1Q86U42 306 aaKnown RBP eCLIP21.63■■□□□ 1.058e-6■□□□□ 8.9
MSH5-212ENST00000467319 EIF4G1Q04637 1599 aaKnown RBP21.21■□□□□ 0.99
MSH5-212ENST00000467319 DNAJC5BQ9UF47 199 aa21.16■□□□□ 0.98
MSH5-212ENST00000467319 CC2D2AQ9P2K1 1620 aa21.07■□□□□ 0.96
MSH5-212ENST00000467319 CECR2Q9BXF3 1484 aa20.96■□□□□ 0.95
MSH5-212ENST00000467319 SMARCA4P51532 1647 aa20.93■□□□□ 0.94
MSH5-212ENST00000467319 BAZ1AQ9NRL2 1556 aaPredicted RBP20.9■□□□□ 0.94
MSH5-212ENST00000467319 MROH2BQ7Z745 1585 aa20.78■□□□□ 0.92
MSH5-212ENST00000467319 PEG3Q9GZU2 1588 aa20.77■□□□□ 0.92
MSH5-212ENST00000467319 SMARCA2P51531 1590 aa20.75■□□□□ 0.91
MSH5-212ENST00000467319 ATAD2BQ9ULI0 1458 aa20.75■□□□□ 0.91
MSH5-212ENST00000467319 NCAPD3P42695 1498 aa20.73■□□□□ 0.91
MSH5-212ENST00000467319 HMGXB3Q12766 1538 aa20.69■□□□□ 0.9
MSH5-212ENST00000467319 RSF1Q96T23 1441 aaPredicted RBP20.57■□□□□ 0.88
MSH5-212ENST00000467319 BAZ1BQ9UIG0 1483 aaKnown RBP20.56■□□□□ 0.88
MSH5-212ENST00000467319 WIZO95785 1651 aa20.54■□□□□ 0.88
MSH5-212ENST00000467319 TOP2AP11388 1531 aaKnown RBP20.39■□□□□ 0.85
MSH5-212ENST00000467319 LAMC3Q9Y6N6 1575 aa20.18■□□□□ 0.82
MSH5-212ENST00000467319 NESP48681 1621 aa20.16■□□□□ 0.82
MSH5-212ENST00000467319 CCDC88BA6NC98 1476 aa20.08■□□□□ 0.81
MSH5-212ENST00000467319 CADPSQ9ULU8 1353 aa20.08■□□□□ 0.8
MSH5-212ENST00000467319 CFTRP13569 1480 aa20.04■□□□□ 0.8
MSH5-212ENST00000467319 ERCC6Q03468 1493 aa19.99■□□□□ 0.79
MSH5-212ENST00000467319 KIF21AQ7Z4S6 1674 aa19.97■□□□□ 0.79
MSH5-212ENST00000467319 PRDM2Q13029 1718 aa19.96■□□□□ 0.79
MSH5-212ENST00000467319 PDS5BQ9NTI5 1447 aa19.96■□□□□ 0.79
MSH5-212ENST00000467319 THOC2Q8NI27 1593 aaKnown RBP19.93■□□□□ 0.78
MSH5-212ENST00000467319 SUPT5HO00267 1087 aaKnown RBP19.93■□□□□ 0.78
MSH5-212ENST00000467319 FANCD2Q9BXW9 1451 aa19.87■□□□□ 0.77
MSH5-212ENST00000467319 CEP164Q9UPV0 1460 aa19.85■□□□□ 0.77
MSH5-212ENST00000467319 CUX2O14529 1486 aa19.82■□□□□ 0.76
MSH5-212ENST00000467319 MRC2Q9UBG0 1479 aa19.8■□□□□ 0.76
MSH5-212ENST00000467319 WDR62O43379 1518 aa19.79■□□□□ 0.76
MSH5-212ENST00000467319 URB2Q14146 1524 aaKnown RBP19.7■□□□□ 0.74
MSH5-212ENST00000467319 DNMBPQ6XZF7 1577 aa19.6■□□□□ 0.73
MSH5-212ENST00000467319 TOPBP1Q92547 1522 aa19.59■□□□□ 0.73
MSH5-212ENST00000467319 ABCC8Q09428 1581 aa19.57■□□□□ 0.72
MSH5-212ENST00000467319 CUX1P39880 1505 aa19.51■□□□□ 0.71
MSH5-212ENST00000467319 POLA1P09884 1462 aaPredicted RBP19.43■□□□□ 0.7
MSH5-212ENST00000467319 IFT140Q96RY7 1462 aa19.42■□□□□ 0.7
MSH5-212ENST00000467319 TARBP1Q13395 1621 aaKnown RBP19.41■□□□□ 0.7
MSH5-212ENST00000467319 BIVM-ERCC5R4GMW8 1640 aa19.4■□□□□ 0.7
MSH5-212ENST00000467319 FGD5Q6ZNL6 1462 aa19.39■□□□□ 0.69
MSH5-212ENST00000467319 SYNJ1O43426 1573 aa19.38■□□□□ 0.69
MSH5-212ENST00000467319 TOP2BQ02880 1626 aa19.38■□□□□ 0.69
MSH5-212ENST00000467319 WRNQ14191 1432 aaPredicted RBP eCLIP19.37■□□□□ 0.69
MSH5-212ENST00000467319 WDR97A6NE52 1622 aa19.33■□□□□ 0.68
MSH5-212ENST00000467319 ZNF608Q9ULD9 1512 aaPredicted RBP19.32■□□□□ 0.68
MSH5-212ENST00000467319 EIF4G3O43432 1585 aaKnown RBP19.32■□□□□ 0.68
MSH5-212ENST00000467319 RAD54L2Q9Y4B4 1467 aa19.29■□□□□ 0.68
MSH5-212ENST00000467319 SOGA1O94964 1423 aa19.27■□□□□ 0.68
MSH5-212ENST00000467319 ABCA10Q8WWZ4 1543 aa19.23■□□□□ 0.67
MSH5-212ENST00000467319 ABCA5Q8WWZ7 1642 aa19.2■□□□□ 0.66
MSH5-212ENST00000467319 AQRO60306 1485 aaKnown RBP eCLIP19.17■□□□□ 0.662e-13■■□□□ 12.5
MSH5-212ENST00000467319 TDRD9Q8NDG6 1382 aaKnown RBP19.14■□□□□ 0.65
MSH5-212ENST00000467319 PBRM1Q86U86 1689 aa19.11■□□□□ 0.65
MSH5-212ENST00000467319 GAPVD1Q14C86 1478 aa19.09■□□□□ 0.65
MSH5-212ENST00000467319 GRIN2BQ13224 1484 aa19.09■□□□□ 0.65
MSH5-212ENST00000467319 MAGI1Q96QZ7 1491 aaPredicted RBP19.07■□□□□ 0.64
MSH5-212ENST00000467319 SNAPC4Q5SXM2 1469 aa19.06■□□□□ 0.64
MSH5-212ENST00000467319 CHD1O14646 1710 aa19.02■□□□□ 0.63
MSH5-212ENST00000467319 ERICH3Q5RHP9 1530 aa19.01■□□□□ 0.63
MSH5-212ENST00000467319 ADAMTS12P58397 1594 aa19■□□□□ 0.63
MSH5-212ENST00000467319 SYNJ2O15056 1496 aa18.97■□□□□ 0.63
MSH5-212ENST00000467319 DNAJC5Q9H3Z4 198 aa18.95■□□□□ 0.62
MSH5-212ENST00000467319 KIF27Q86VH2 1401 aa18.94■□□□□ 0.62
MSH5-212ENST00000467319 FHAD1B1AJZ9 1412 aa18.89■□□□□ 0.61
MSH5-212ENST00000467319 CUL7Q14999 1698 aa18.88■□□□□ 0.61
MSH5-212ENST00000467319 GRIN2AQ12879 1464 aa18.87■□□□□ 0.61
MSH5-212ENST00000467319 CLASP1Q7Z460 1538 aa18.86■□□□□ 0.61
MSH5-212ENST00000467319 OSCARQ8IYS5 282 aa18.86■□□□□ 0.61
MSH5-212ENST00000467319 TRIM41Q8WV44 630 aa18.84■□□□□ 0.61
MSH5-212ENST00000467319 IGF1RP08069 1367 aa18.83■□□□□ 0.61
MSH5-212ENST00000467319 NUP160Q12769 1436 aa18.81■□□□□ 0.6
MSH5-212ENST00000467319 RUSC2Q8N2Y8 1516 aa18.8■□□□□ 0.6
MSH5-212ENST00000467319 CHMP7Q8WUX9 453 aaPredicted RBP18.8■□□□□ 0.6
MSH5-212ENST00000467319 CEP170Q5SW79 1584 aa18.8■□□□□ 0.6
MSH5-212ENST00000467319 FBLN2P98095 1184 aa18.78■□□□□ 0.6
MSH5-212ENST00000467319 CHIC1Q5VXU3 224 aa18.74■□□□□ 0.59
MSH5-212ENST00000467319 CARMIL1Q5VZK9 1371 aa18.7■□□□□ 0.58
MSH5-212ENST00000467319 ARHGEF11O15085 1522 aa18.7■□□□□ 0.58
MSH5-212ENST00000467319 RIMBP3CA6NJZ7 1639 aa18.69■□□□□ 0.58
MSH5-212ENST00000467319 RIMBP3BA6NNM3 1639 aa18.69■□□□□ 0.58
MSH5-212ENST00000467319 SHROOM2Q13796 1616 aa18.69■□□□□ 0.58
MSH5-212ENST00000467319 RIMBP3Q9UFD9 1639 aa18.69■□□□□ 0.58
MSH5-212ENST00000467319 EEA1Q15075 1411 aa18.68■□□□□ 0.58
MSH5-212ENST00000467319 PRXQ9BXM0 1461 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms