RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 NISCHQ9Y2I1 1504 aa30.3■■■□□ 2.44
COL4A1-202ENST00000467182 CCDC180Q9P1Z9 1646 aa26.6■■□□□ 1.85
COL4A1-202ENST00000467182 ZCCHC6Q5VYS8 1495 aaKnown RBP25.42■■□□□ 1.66
COL4A1-202ENST00000467182 ABCC9O60706 1549 aa25.26■■□□□ 1.63
COL4A1-202ENST00000467182 DCAF1Q9Y4B6 1507 aa25.1■■□□□ 1.61
COL4A1-202ENST00000467182 MYO15BQ96JP2 1530 aa24.91■■□□□ 1.58
COL4A1-202ENST00000467182 DCAF8L2P0C7V8 631 aa24.87■■□□□ 1.57
COL4A1-202ENST00000467182 NACADO15069 1562 aa24.78■■□□□ 1.56
COL4A1-202ENST00000467182 RB1CC1Q8TDY2 1594 aa24.61■■□□□ 1.53
COL4A1-202ENST00000467182 SHROOM4Q9ULL8 1493 aa24.39■■□□□ 1.5
COL4A1-202ENST00000467182 SCRIBQ14160 1630 aa24.34■■□□□ 1.49
COL4A1-202ENST00000467182 UNC13AQ9UPW8 1703 aa24.19■■□□□ 1.46
COL4A1-202ENST00000467182 BICRAQ9NZM4 1560 aa23.95■■□□□ 1.42
COL4A1-202ENST00000467182 PABPN1Q86U42 306 aaKnown RBP eCLIP23.72■■□□□ 1.39
COL4A1-202ENST00000467182 CECR2Q9BXF3 1484 aa23.56■■□□□ 1.36
COL4A1-202ENST00000467182 MROH2BQ7Z745 1585 aa23.4■■□□□ 1.34
COL4A1-202ENST00000467182 BAZ1AQ9NRL2 1556 aaPredicted RBP23.4■■□□□ 1.34
COL4A1-202ENST00000467182 RSF1Q96T23 1441 aaPredicted RBP23.39■■□□□ 1.33
COL4A1-202ENST00000467182 SMARCA4P51532 1647 aa23.36■■□□□ 1.33
COL4A1-202ENST00000467182 SUPT5HO00267 1087 aaKnown RBP23.3■■□□□ 1.32
COL4A1-202ENST00000467182 WIZO95785 1651 aa23.2■■□□□ 1.3
COL4A1-202ENST00000467182 EIF4G1Q04637 1599 aaKnown RBP23.19■■□□□ 1.3
COL4A1-202ENST00000467182 PEG3Q9GZU2 1588 aa23.13■■□□□ 1.29
COL4A1-202ENST00000467182 ATAD2BQ9ULI0 1458 aa23.01■■□□□ 1.27
COL4A1-202ENST00000467182 SMARCA2P51531 1590 aa22.98■■□□□ 1.27
COL4A1-202ENST00000467182 TOP2AP11388 1531 aaKnown RBP22.96■■□□□ 1.27
COL4A1-202ENST00000467182 CC2D2AQ9P2K1 1620 aa22.9■■□□□ 1.26
COL4A1-202ENST00000467182 NCAPD3P42695 1498 aa22.86■■□□□ 1.25
COL4A1-202ENST00000467182 HMGXB3Q12766 1538 aa22.83■■□□□ 1.25
COL4A1-202ENST00000467182 BAZ1BQ9UIG0 1483 aaKnown RBP22.83■■□□□ 1.25
COL4A1-202ENST00000467182 CCDC88BA6NC98 1476 aa22.69■■□□□ 1.22
COL4A1-202ENST00000467182 DNAJC5BQ9UF47 199 aa22.53■■□□□ 1.2
COL4A1-202ENST00000467182 CFTRP13569 1480 aa22.28■■□□□ 1.16
COL4A1-202ENST00000467182 CHIC1Q5VXU3 224 aa22.26■■□□□ 1.15
COL4A1-202ENST00000467182 PRDM2Q13029 1718 aa22.23■■□□□ 1.15
COL4A1-202ENST00000467182 CADPSQ9ULU8 1353 aa22.22■■□□□ 1.15
COL4A1-202ENST00000467182 LAMC3Q9Y6N6 1575 aa22.13■■□□□ 1.13
COL4A1-202ENST00000467182 NESP48681 1621 aa22.13■■□□□ 1.13
COL4A1-202ENST00000467182 ABCC8Q09428 1581 aa22.12■■□□□ 1.13
COL4A1-202ENST00000467182 WRNQ14191 1432 aaPredicted RBP eCLIP21.98■■□□□ 1.11
COL4A1-202ENST00000467182 FANCD2Q9BXW9 1451 aa21.97■■□□□ 1.11
COL4A1-202ENST00000467182 SYNJ1O43426 1573 aa21.97■■□□□ 1.11
COL4A1-202ENST00000467182 TRIM41Q8WV44 630 aa21.95■■□□□ 1.1
COL4A1-202ENST00000467182 BIVM-ERCC5R4GMW8 1640 aa21.91■■□□□ 1.1
COL4A1-202ENST00000467182 KIF21AQ7Z4S6 1674 aa21.91■■□□□ 1.1
COL4A1-202ENST00000467182 PDS5BQ9NTI5 1447 aa21.9■■□□□ 1.1
COL4A1-202ENST00000467182 TOP2BQ02880 1626 aa21.9■■□□□ 1.1
COL4A1-202ENST00000467182 CUX1P39880 1505 aa21.9■■□□□ 1.1
COL4A1-202ENST00000467182 CEP164Q9UPV0 1460 aa21.86■■□□□ 1.09
COL4A1-202ENST00000467182 DNMBPQ6XZF7 1577 aa21.78■■□□□ 1.08
COL4A1-202ENST00000467182 URB2Q14146 1524 aaKnown RBP21.76■■□□□ 1.07
COL4A1-202ENST00000467182 TOPBP1Q92547 1522 aa21.74■■□□□ 1.07
COL4A1-202ENST00000467182 MRC2Q9UBG0 1479 aa21.68■■□□□ 1.06
COL4A1-202ENST00000467182 FGD5Q6ZNL6 1462 aa21.67■■□□□ 1.06
COL4A1-202ENST00000467182 THOC2Q8NI27 1593 aaKnown RBP21.64■■□□□ 1.05
COL4A1-202ENST00000467182 SOGA1O94964 1423 aa21.63■■□□□ 1.05
COL4A1-202ENST00000467182 ERCC6Q03468 1493 aa21.63■■□□□ 1.05
COL4A1-202ENST00000467182 WDR62O43379 1518 aa21.62■■□□□ 1.05
COL4A1-202ENST00000467182 POLA1P09884 1462 aaPredicted RBP21.61■■□□□ 1.05
COL4A1-202ENST00000467182 RUSC2Q8N2Y8 1516 aa21.6■■□□□ 1.05
COL4A1-202ENST00000467182 EEA1Q15075 1411 aa21.54■■□□□ 1.04
COL4A1-202ENST00000467182 RAD54L2Q9Y4B4 1467 aa21.52■■□□□ 1.04
COL4A1-202ENST00000467182 WDR97A6NE52 1622 aa21.52■■□□□ 1.04
COL4A1-202ENST00000467182 FAM9AQ8IZU1 332 aaPredicted RBP21.51■■□□□ 1.03
COL4A1-202ENST00000467182 ABCA10Q8WWZ4 1543 aa21.49■■□□□ 1.03
COL4A1-202ENST00000467182 TARBP1Q13395 1621 aaKnown RBP21.48■■□□□ 1.03
COL4A1-202ENST00000467182 CUX2O14529 1486 aa21.48■■□□□ 1.03
COL4A1-202ENST00000467182 KIF27Q86VH2 1401 aa21.43■■□□□ 1.02
COL4A1-202ENST00000467182 CSRNP3Q8WYN3 585 aa21.4■■□□□ 1.02
COL4A1-202ENST00000467182 ABCA5Q8WWZ7 1642 aa21.38■■□□□ 1.01
COL4A1-202ENST00000467182 IFT140Q96RY7 1462 aa21.37■■□□□ 1.01
COL4A1-202ENST00000467182 LOC105371045A0A1W2PR82 267 aa21.36■■□□□ 1.01
COL4A1-202ENST00000467182 KIF21BO75037 1637 aa21.33■■□□□ 1.01
COL4A1-202ENST00000467182 IGF1RP08069 1367 aa21.3■■□□□ 1
COL4A1-202ENST00000467182 PRXQ9BXM0 1461 aa21.29■■□□□ 1
COL4A1-202ENST00000467182 TDRD9Q8NDG6 1382 aaKnown RBP21.29■■□□□ 1
COL4A1-202ENST00000467182 ZNF608Q9ULD9 1512 aaPredicted RBP21.27■■□□□ 1
COL4A1-202ENST00000467182 GAPVD1Q14C86 1478 aa21.26■□□□□ 0.99
COL4A1-202ENST00000467182 PBRM1Q86U86 1689 aa21.24■□□□□ 0.99
COL4A1-202ENST00000467182 ERICH3Q5RHP9 1530 aa21.24■□□□□ 0.99
COL4A1-202ENST00000467182 GOLGA3Q08378 1498 aa21.23■□□□□ 0.99
COL4A1-202ENST00000467182 EIF4G3O43432 1585 aaKnown RBP21.23■□□□□ 0.99
COL4A1-202ENST00000467182 AQRO60306 1485 aaKnown RBP eCLIP21.22■□□□□ 0.99
COL4A1-202ENST00000467182 RAPGEF2Q9Y4G8 1499 aa21.21■□□□□ 0.99
COL4A1-202ENST00000467182 CUL7Q14999 1698 aa21.2■□□□□ 0.98
COL4A1-202ENST00000467182 EHMT2Q96KQ7 1210 aa21.17■□□□□ 0.98
COL4A1-202ENST00000467182 CARMIL1Q5VZK9 1371 aa21.16■□□□□ 0.98
COL4A1-202ENST00000467182 GRIN2BQ13224 1484 aa21.14■□□□□ 0.98
COL4A1-202ENST00000467182 TNIKQ9UKE5 1360 aa21.11■□□□□ 0.97
COL4A1-202ENST00000467182 ADAMTS12P58397 1594 aa21.1■□□□□ 0.97
COL4A1-202ENST00000467182 SNAPC4Q5SXM2 1469 aa21.05■□□□□ 0.96
COL4A1-202ENST00000467182 FHAD1B1AJZ9 1412 aa21.04■□□□□ 0.96
COL4A1-202ENST00000467182 UBTFP17480 764 aaKnown RBP21.02■□□□□ 0.96
COL4A1-202ENST00000467182 MAGI1Q96QZ7 1491 aaPredicted RBP21.01■□□□□ 0.95
COL4A1-202ENST00000467182 CEP162Q5TB80 1403 aa20.96■□□□□ 0.95
COL4A1-202ENST00000467182 CTTNBP2Q8WZ74 1663 aa20.95■□□□□ 0.94
COL4A1-202ENST00000467182 SYNJ2O15056 1496 aa20.93■□□□□ 0.94
COL4A1-202ENST00000467182 GRIN2AQ12879 1464 aa20.9■□□□□ 0.94
COL4A1-202ENST00000467182 CLIP1P30622 1438 aa20.85■□□□□ 0.93
COL4A1-202ENST00000467182 CHD1O14646 1710 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms