RNA–Protein interactions for RNA: ENST00000467049.1

PTPDC1-203, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

TSL 2

Gene PTPDC1, Length 1,861 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-203ENST00000467049 NISCHQ9Y2I1 1504 aa22.81■■□□□ 1.24
PTPDC1-203ENST00000467049 CCDC180Q9P1Z9 1646 aa20.63■□□□□ 0.89
PTPDC1-203ENST00000467049 ABCC9O60706 1549 aa20.63■□□□□ 0.89
PTPDC1-203ENST00000467049 RB1CC1Q8TDY2 1594 aa19.65■□□□□ 0.74
PTPDC1-203ENST00000467049 NACADO15069 1562 aa19.49■□□□□ 0.71
PTPDC1-203ENST00000467049 DNAJC5BQ9UF47 199 aa19.44■□□□□ 0.7
PTPDC1-203ENST00000467049 UNC13AQ9UPW8 1703 aa19.25■□□□□ 0.67
PTPDC1-203ENST00000467049 MYO15BQ96JP2 1530 aa19.2■□□□□ 0.66
PTPDC1-203ENST00000467049 DCAF8L2P0C7V8 631 aa19.15■□□□□ 0.66
PTPDC1-203ENST00000467049 PABPN1Q86U42 306 aaKnown RBP eCLIP19.12■□□□□ 0.65
PTPDC1-203ENST00000467049 BICRAQ9NZM4 1560 aa19.08■□□□□ 0.64
PTPDC1-203ENST00000467049 DCAF1Q9Y4B6 1507 aa18.89■□□□□ 0.61
PTPDC1-203ENST00000467049 ZCCHC6Q5VYS8 1495 aaKnown RBP18.88■□□□□ 0.61
PTPDC1-203ENST00000467049 SHROOM4Q9ULL8 1493 aa18.87■□□□□ 0.61
PTPDC1-203ENST00000467049 SCRIBQ14160 1630 aa18.68■□□□□ 0.58
PTPDC1-203ENST00000467049 CC2D2AQ9P2K1 1620 aa18.68■□□□□ 0.58
PTPDC1-203ENST00000467049 CECR2Q9BXF3 1484 aa18.62■□□□□ 0.57
PTPDC1-203ENST00000467049 EIF4G1Q04637 1599 aaKnown RBP18.61■□□□□ 0.57
PTPDC1-203ENST00000467049 DNAJC5Q9H3Z4 198 aa18.01■□□□□ 0.47
PTPDC1-203ENST00000467049 NCAPD3P42695 1498 aa17.96■□□□□ 0.47
PTPDC1-203ENST00000467049 CUX2O14529 1486 aa17.92■□□□□ 0.46
PTPDC1-203ENST00000467049 ATAD2BQ9ULI0 1458 aa17.87■□□□□ 0.45
PTPDC1-203ENST00000467049 SMARCA2P51531 1590 aa17.85■□□□□ 0.45
PTPDC1-203ENST00000467049 HMGXB3Q12766 1538 aa17.85■□□□□ 0.45
PTPDC1-203ENST00000467049 SMARCA4P51532 1647 aa17.85■□□□□ 0.45
PTPDC1-203ENST00000467049 ERCC6Q03468 1493 aa17.83■□□□□ 0.45
PTPDC1-203ENST00000467049 BAZ1AQ9NRL2 1556 aaPredicted RBP17.73■□□□□ 0.43
PTPDC1-203ENST00000467049 PEG3Q9GZU2 1588 aa17.7■□□□□ 0.42
PTPDC1-203ENST00000467049 BAZ1BQ9UIG0 1483 aaKnown RBP17.69■□□□□ 0.42
PTPDC1-203ENST00000467049 NESP48681 1621 aa17.68■□□□□ 0.42
PTPDC1-203ENST00000467049 THOC2Q8NI27 1593 aaKnown RBP17.62■□□□□ 0.41
PTPDC1-203ENST00000467049 LAMC3Q9Y6N6 1575 aa17.62■□□□□ 0.41
PTPDC1-203ENST00000467049 MROH2BQ7Z745 1585 aa17.54■□□□□ 0.4
PTPDC1-203ENST00000467049 KIF21AQ7Z4S6 1674 aa17.53■□□□□ 0.4
PTPDC1-203ENST00000467049 PDS5BQ9NTI5 1447 aa17.47■□□□□ 0.39
PTPDC1-203ENST00000467049 CADPSQ9ULU8 1353 aa17.38■□□□□ 0.37
PTPDC1-203ENST00000467049 MRC2Q9UBG0 1479 aa17.35■□□□□ 0.37
PTPDC1-203ENST00000467049 WIZO95785 1651 aa17.35■□□□□ 0.37
PTPDC1-203ENST00000467049 WDR62O43379 1518 aa17.33■□□□□ 0.37
PTPDC1-203ENST00000467049 CEP164Q9UPV0 1460 aa17.23■□□□□ 0.35
PTPDC1-203ENST00000467049 FANCD2Q9BXW9 1451 aa17.19■□□□□ 0.34
PTPDC1-203ENST00000467049 CFTRP13569 1480 aa17.17■□□□□ 0.34
PTPDC1-203ENST00000467049 TOP2AP11388 1531 aaKnown RBP17.15■□□□□ 0.34
PTPDC1-203ENST00000467049 RSF1Q96T23 1441 aaPredicted RBP17.11■□□□□ 0.33
PTPDC1-203ENST00000467049 PRDM2Q13029 1718 aa17.11■□□□□ 0.33
PTPDC1-203ENST00000467049 TRIM41Q8WV44 630 aa17.09■□□□□ 0.33
PTPDC1-203ENST00000467049 URB2Q14146 1524 aaKnown RBP17.06■□□□□ 0.32
PTPDC1-203ENST00000467049 OSCARQ8IYS5 282 aa16.99■□□□□ 0.31
PTPDC1-203ENST00000467049 IFT140Q96RY7 1462 aa16.91■□□□□ 0.3
PTPDC1-203ENST00000467049 CCDC88BA6NC98 1476 aa16.9■□□□□ 0.3
PTPDC1-203ENST00000467049 TOPBP1Q92547 1522 aa16.86■□□□□ 0.29
PTPDC1-203ENST00000467049 RIMBP3CA6NJZ7 1639 aa16.86■□□□□ 0.29
PTPDC1-203ENST00000467049 RIMBP3BA6NNM3 1639 aa16.86■□□□□ 0.29
PTPDC1-203ENST00000467049 RIMBP3Q9UFD9 1639 aa16.86■□□□□ 0.29
PTPDC1-203ENST00000467049 ABCC8Q09428 1581 aa16.85■□□□□ 0.29
PTPDC1-203ENST00000467049 ZNF608Q9ULD9 1512 aaPredicted RBP16.85■□□□□ 0.29
PTPDC1-203ENST00000467049 DNMBPQ6XZF7 1577 aa16.82■□□□□ 0.28
PTPDC1-203ENST00000467049 EIF4G3O43432 1585 aaKnown RBP16.81■□□□□ 0.28
PTPDC1-203ENST00000467049 ARHGEF11O15085 1522 aa16.77■□□□□ 0.27
PTPDC1-203ENST00000467049 TARBP1Q13395 1621 aaKnown RBP16.75■□□□□ 0.27
PTPDC1-203ENST00000467049 CHD1O14646 1710 aa16.74■□□□□ 0.27
PTPDC1-203ENST00000467049 POLA1P09884 1462 aaPredicted RBP16.66■□□□□ 0.26
PTPDC1-203ENST00000467049 AQRO60306 1485 aaKnown RBP eCLIP16.66■□□□□ 0.26
PTPDC1-203ENST00000467049 WDR97A6NE52 1622 aa16.64■□□□□ 0.25
PTPDC1-203ENST00000467049 ARAP1Q96P48 1450 aa16.59■□□□□ 0.25
PTPDC1-203ENST00000467049 RAD54L2Q9Y4B4 1467 aa16.58■□□□□ 0.24
PTPDC1-203ENST00000467049 SOGA1O94964 1423 aa16.57■□□□□ 0.24
PTPDC1-203ENST00000467049 CYB5RLQ6IPT4 315 aa16.56■□□□□ 0.24
PTPDC1-203ENST00000467049 FGD5Q6ZNL6 1462 aa16.54■□□□□ 0.24
PTPDC1-203ENST00000467049 CLASP1Q7Z460 1538 aa16.53■□□□□ 0.24
PTPDC1-203ENST00000467049 FBLN2P98095 1184 aa16.52■□□□□ 0.24
PTPDC1-203ENST00000467049 SNAPC4Q5SXM2 1469 aa16.52■□□□□ 0.24
PTPDC1-203ENST00000467049 TDRD9Q8NDG6 1382 aaKnown RBP16.51■□□□□ 0.23
PTPDC1-203ENST00000467049 MAGI1Q96QZ7 1491 aaPredicted RBP16.51■□□□□ 0.23
PTPDC1-203ENST00000467049 CUX1P39880 1505 aa16.51■□□□□ 0.23
PTPDC1-203ENST00000467049 SYNJ1O43426 1573 aa16.5■□□□□ 0.23
PTPDC1-203ENST00000467049 GRIN2BQ13224 1484 aa16.47■□□□□ 0.23
PTPDC1-203ENST00000467049 PBRM1Q86U86 1689 aa16.45■□□□□ 0.22
PTPDC1-203ENST00000467049 SYNJ2O15056 1496 aa16.44■□□□□ 0.22
PTPDC1-203ENST00000467049 TRHP20396 242 aaPredicted RBP16.42■□□□□ 0.22
PTPDC1-203ENST00000467049 CHMP7Q8WUX9 453 aaPredicted RBP16.42■□□□□ 0.22
PTPDC1-203ENST00000467049 ABCA5Q8WWZ7 1642 aa16.39■□□□□ 0.21
PTPDC1-203ENST00000467049 GAPVD1Q14C86 1478 aa16.38■□□□□ 0.21
PTPDC1-203ENST00000467049 ABCA10Q8WWZ4 1543 aa16.37■□□□□ 0.21
PTPDC1-203ENST00000467049 ADAMTS12P58397 1594 aa16.27■□□□□ 0.2
PTPDC1-203ENST00000467049 BIVM-ERCC5R4GMW8 1640 aa16.26■□□□□ 0.19
PTPDC1-203ENST00000467049 GRIN2AQ12879 1464 aa16.26■□□□□ 0.19
PTPDC1-203ENST00000467049 WRNQ14191 1432 aaPredicted RBP eCLIP16.24■□□□□ 0.19
PTPDC1-203ENST00000467049 TOP2BQ02880 1626 aa16.23■□□□□ 0.19
PTPDC1-203ENST00000467049 NUP160Q12769 1436 aa16.22■□□□□ 0.19
PTPDC1-203ENST00000467049 CEP170Q5SW79 1584 aa16.22■□□□□ 0.19
PTPDC1-203ENST00000467049 SHROOM2Q13796 1616 aa16.21■□□□□ 0.19
PTPDC1-203ENST00000467049 ERCC6L2Q5T890 1561 aa16.21■□□□□ 0.18
PTPDC1-203ENST00000467049 FHAD1B1AJZ9 1412 aa16.18■□□□□ 0.18
PTPDC1-203ENST00000467049 ERICH3Q5RHP9 1530 aa16.17■□□□□ 0.18
PTPDC1-203ENST00000467049 SUPT5HO00267 1087 aaKnown RBP16.14■□□□□ 0.17
PTPDC1-203ENST00000467049 KIF13AQ9H1H9 1805 aa16.09■□□□□ 0.17
PTPDC1-203ENST00000467049 AEBP2Q6ZN18 517 aaPredicted RBP16.08■□□□□ 0.16
PTPDC1-203ENST00000467049 RUSC2Q8N2Y8 1516 aa16.04■□□□□ 0.16
PTPDC1-203ENST00000467049 PRG4Q92954 1404 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms