RNA–Protein interactions for RNA: ENST00000466969.1

UBR4-210, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-210ENST00000466969 NISCHQ9Y2I1 1504 aa33.18■■■□□ 2.9
UBR4-210ENST00000466969 ABCC9O60706 1549 aa31.8■■■□□ 2.68
UBR4-210ENST00000466969 DNAJC5BQ9UF47 199 aa31.05■■■□□ 2.56
UBR4-210ENST00000466969 CCDC180Q9P1Z9 1646 aa30.36■■■□□ 2.45
UBR4-210ENST00000466969 RB1CC1Q8TDY2 1594 aa29.64■■■□□ 2.33
UBR4-210ENST00000466969 DNAJC5Q9H3Z4 198 aa29.61■■■□□ 2.33
UBR4-210ENST00000466969 PABPN1Q86U42 306 aaKnown RBP eCLIP29.42■■■□□ 2.3
UBR4-210ENST00000466969 NACADO15069 1562 aa29.08■■■□□ 2.25
UBR4-210ENST00000466969 UNC13AQ9UPW8 1703 aa28.86■■■□□ 2.21
UBR4-210ENST00000466969 CECR2Q9BXF3 1484 aa28.8■■■□□ 2.2
UBR4-210ENST00000466969 DCAF8L2P0C7V8 631 aa28.78■■■□□ 2.2
UBR4-210ENST00000466969 BICRAQ9NZM4 1560 aa28.75■■■□□ 2.19
UBR4-210ENST00000466969 CC2D2AQ9P2K1 1620 aa28.61■■■□□ 2.17
UBR4-210ENST00000466969 SHROOM4Q9ULL8 1493 aa28.27■■■□□ 2.12
UBR4-210ENST00000466969 EIF4G1Q04637 1599 aaKnown RBP28.21■■■□□ 2.11
UBR4-210ENST00000466969 MYO15BQ96JP2 1530 aa28.18■■■□□ 2.1
UBR4-210ENST00000466969 CUX2O14529 1486 aa28■■■□□ 2.07
UBR4-210ENST00000466969 TRIM41Q8WV44 630 aa27.79■■■□□ 2.04
UBR4-210ENST00000466969 ERCC6Q03468 1493 aa27.62■■■□□ 2.01
UBR4-210ENST00000466969 SCRIBQ14160 1630 aa27.6■■■□□ 2.01
UBR4-210ENST00000466969 DCAF1Q9Y4B6 1507 aa27.3■■□□□ 1.96
UBR4-210ENST00000466969 ZCCHC6Q5VYS8 1495 aaKnown RBP27.18■■□□□ 1.94
UBR4-210ENST00000466969 NESP48681 1621 aa26.87■■□□□ 1.89
UBR4-210ENST00000466969 NCAPD3P42695 1498 aa26.87■■□□□ 1.89
UBR4-210ENST00000466969 THOC2Q8NI27 1593 aaKnown RBP26.86■■□□□ 1.89
UBR4-210ENST00000466969 SMARCA2P51531 1590 aa26.64■■□□□ 1.86
UBR4-210ENST00000466969 ATAD2BQ9ULI0 1458 aa26.57■■□□□ 1.84
UBR4-210ENST00000466969 AEBP2Q6ZN18 517 aaPredicted RBP26.57■■□□□ 1.84
UBR4-210ENST00000466969 OSCARQ8IYS5 282 aa26.55■■□□□ 1.84
UBR4-210ENST00000466969 HMGXB3Q12766 1538 aa26.51■■□□□ 1.83
UBR4-210ENST00000466969 BAZ1AQ9NRL2 1556 aaPredicted RBP26.49■■□□□ 1.83
UBR4-210ENST00000466969 LAMC3Q9Y6N6 1575 aa26.49■■□□□ 1.83
UBR4-210ENST00000466969 KIF21AQ7Z4S6 1674 aa26.46■■□□□ 1.83
UBR4-210ENST00000466969 PDS5BQ9NTI5 1447 aa26.44■■□□□ 1.82
UBR4-210ENST00000466969 BAZ1BQ9UIG0 1483 aaKnown RBP26.28■■□□□ 1.8
UBR4-210ENST00000466969 RIMBP3CA6NJZ7 1639 aa26.26■■□□□ 1.79
UBR4-210ENST00000466969 RIMBP3BA6NNM3 1639 aa26.26■■□□□ 1.79
UBR4-210ENST00000466969 RIMBP3Q9UFD9 1639 aa26.26■■□□□ 1.79
UBR4-210ENST00000466969 MRC2Q9UBG0 1479 aa26.25■■□□□ 1.79
UBR4-210ENST00000466969 TRHP20396 242 aaPredicted RBP26.25■■□□□ 1.79
UBR4-210ENST00000466969 WDR62O43379 1518 aa26.19■■□□□ 1.78
UBR4-210ENST00000466969 SMARCA4P51532 1647 aa26.17■■□□□ 1.78
UBR4-210ENST00000466969 ARHGEF11O15085 1522 aa26.04■■□□□ 1.76
UBR4-210ENST00000466969 CYB5RLQ6IPT4 315 aa26.03■■□□□ 1.76
UBR4-210ENST00000466969 CADPSQ9ULU8 1353 aa26.01■■□□□ 1.75
UBR4-210ENST00000466969 PEG3Q9GZU2 1588 aa25.9■■□□□ 1.74
UBR4-210ENST00000466969 CEP164Q9UPV0 1460 aa25.88■■□□□ 1.73
UBR4-210ENST00000466969 FANCD2Q9BXW9 1451 aa25.72■■□□□ 1.71
UBR4-210ENST00000466969 ARAP1Q96P48 1450 aa25.68■■□□□ 1.7
UBR4-210ENST00000466969 ILDR1Q86SU0 546 aaPredicted RBP25.58■■□□□ 1.69
UBR4-210ENST00000466969 URB2Q14146 1524 aaKnown RBP25.54■■□□□ 1.68
UBR4-210ENST00000466969 MROH2BQ7Z745 1585 aa25.53■■□□□ 1.68
UBR4-210ENST00000466969 ZNF608Q9ULD9 1512 aaPredicted RBP25.47■■□□□ 1.67
UBR4-210ENST00000466969 RSF1Q96T23 1441 aaPredicted RBP25.46■■□□□ 1.67
UBR4-210ENST00000466969 IFT140Q96RY7 1462 aa25.41■■□□□ 1.66
UBR4-210ENST00000466969 CFTRP13569 1480 aa25.38■■□□□ 1.65
UBR4-210ENST00000466969 FBLN2P98095 1184 aa25.32■■□□□ 1.64
UBR4-210ENST00000466969 CHD1O14646 1710 aa25.32■■□□□ 1.64
UBR4-210ENST00000466969 EIF4G3O43432 1585 aaKnown RBP25.26■■□□□ 1.63
UBR4-210ENST00000466969 WIZO95785 1651 aa25.16■■□□□ 1.62
UBR4-210ENST00000466969 AQRO60306 1485 aaKnown RBP eCLIP25.09■■□□□ 1.614e-7■■■■□ 26
UBR4-210ENST00000466969 TOPBP1Q92547 1522 aa25.04■■□□□ 1.6
UBR4-210ENST00000466969 CLASP1Q7Z460 1538 aa25■■□□□ 1.59
UBR4-210ENST00000466969 PRDM2Q13029 1718 aa24.96■■□□□ 1.59
UBR4-210ENST00000466969 ABCC8Q09428 1581 aa24.94■■□□□ 1.58
UBR4-210ENST00000466969 SYNJ1O43426 1573 aa24.92■■□□□ 1.58
UBR4-210ENST00000466969 GAPVD1Q14C86 1478 aa24.91■■□□□ 1.58
UBR4-210ENST00000466969 CHMP7Q8WUX9 453 aaPredicted RBP24.89■■□□□ 1.58
UBR4-210ENST00000466969 TARBP1Q13395 1621 aaKnown RBP24.89■■□□□ 1.57
UBR4-210ENST00000466969 KDM4FA0A1W2PPD8 638 aa24.85■■□□□ 1.57
UBR4-210ENST00000466969 DNMBPQ6XZF7 1577 aa24.82■■□□□ 1.56
UBR4-210ENST00000466969 SNAPC4Q5SXM2 1469 aa24.79■■□□□ 1.56
UBR4-210ENST00000466969 TOP2AP11388 1531 aaKnown RBP24.76■■□□□ 1.55
UBR4-210ENST00000466969 TDRD9Q8NDG6 1382 aaKnown RBP24.74■■□□□ 1.55
UBR4-210ENST00000466969 POLA1P09884 1462 aaPredicted RBP24.7■■□□□ 1.54
UBR4-210ENST00000466969 MAGI1Q96QZ7 1491 aaPredicted RBP24.67■■□□□ 1.54
UBR4-210ENST00000466969 KIF13AQ9H1H9 1805 aa24.65■■□□□ 1.54
UBR4-210ENST00000466969 RAD54L2Q9Y4B4 1467 aa24.64■■□□□ 1.54
UBR4-210ENST00000466969 SYNJ2O15056 1496 aa24.62■■□□□ 1.53
UBR4-210ENST00000466969 SOGA1O94964 1423 aa24.61■■□□□ 1.53
UBR4-210ENST00000466969 WDR97A6NE52 1622 aa24.57■■□□□ 1.52
UBR4-210ENST00000466969 GRIN2BQ13224 1484 aa24.54■■□□□ 1.52
UBR4-210ENST00000466969 ERCC6L2Q5T890 1561 aa24.53■■□□□ 1.52
UBR4-210ENST00000466969 FAM69CQ0P6D2 419 aa24.51■■□□□ 1.51
UBR4-210ENST00000466969 CCDC88BA6NC98 1476 aa24.51■■□□□ 1.51
UBR4-210ENST00000466969 FBXO41Q8TF61 875 aa24.49■■□□□ 1.51
UBR4-210ENST00000466969 KDM6BO15054 1643 aa24.47■■□□□ 1.51
UBR4-210ENST00000466969 HECW2Q9P2P5 1572 aa24.42■■□□□ 1.5
UBR4-210ENST00000466969 ABCC10Q5T3U5 1492 aa24.4■■□□□ 1.5
UBR4-210ENST00000466969 FGD5Q6ZNL6 1462 aa24.35■■□□□ 1.49
UBR4-210ENST00000466969 CEP170Q5SW79 1584 aa24.34■■□□□ 1.49
UBR4-210ENST00000466969 NPM1P06748 294 aaKnown RBP eCLIP24.31■■□□□ 1.48
UBR4-210ENST00000466969 ADGRL1O94910 1474 aa24.31■■□□□ 1.48
UBR4-210ENST00000466969 LMTK3Q96Q04 1460 aa24.29■■□□□ 1.48
UBR4-210ENST00000466969 PBRM1Q86U86 1689 aa24.29■■□□□ 1.48
UBR4-210ENST00000466969 DIP2BQ9P265 1576 aa24.26■■□□□ 1.47
UBR4-210ENST00000466969 MAPKBP1O60336 1514 aa24.2■■□□□ 1.47
UBR4-210ENST00000466969 GRIN2AQ12879 1464 aa24.2■■□□□ 1.47
UBR4-210ENST00000466969 TSPOAP1O95153 1857 aa24.19■■□□□ 1.46
UBR4-210ENST00000466969 SHROOM2Q13796 1616 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms