RNA–Protein interactions for RNA: ENST00000466793.1

SMPDL3B-204, Transcript of sphingomyelin phosphodiesterase acid like 3B, humanhuman

TSL 3

Gene SMPDL3B, Length 726 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3B-204ENST00000466793 NISCHQ9Y2I1 1504 aa31.33■■■□□ 2.61
SMPDL3B-204ENST00000466793 ABCC9O60706 1549 aa28.19■■■□□ 2.1
SMPDL3B-204ENST00000466793 CCDC180Q9P1Z9 1646 aa27.92■■■□□ 2.06
SMPDL3B-204ENST00000466793 DNAJC5BQ9UF47 199 aa26.78■■□□□ 1.88
SMPDL3B-204ENST00000466793 RB1CC1Q8TDY2 1594 aa26.58■■□□□ 1.85
SMPDL3B-204ENST00000466793 NACADO15069 1562 aa26.41■■□□□ 1.82
SMPDL3B-204ENST00000466793 DCAF8L2P0C7V8 631 aa26.37■■□□□ 1.81
SMPDL3B-204ENST00000466793 PABPN1Q86U42 306 aaKnown RBP eCLIP26.33■■□□□ 1.81
SMPDL3B-204ENST00000466793 UNC13AQ9UPW8 1703 aa26.25■■□□□ 1.79
SMPDL3B-204ENST00000466793 BICRAQ9NZM4 1560 aa26.16■■□□□ 1.78
SMPDL3B-204ENST00000466793 MYO15BQ96JP2 1530 aa26.04■■□□□ 1.76
SMPDL3B-204ENST00000466793 ZCCHC6Q5VYS8 1495 aaKnown RBP25.96■■□□□ 1.75
SMPDL3B-204ENST00000466793 DCAF1Q9Y4B6 1507 aa25.74■■□□□ 1.71
SMPDL3B-204ENST00000466793 SCRIBQ14160 1630 aa25.63■■□□□ 1.69
SMPDL3B-204ENST00000466793 CC2D2AQ9P2K1 1620 aa25.42■■□□□ 1.66
SMPDL3B-204ENST00000466793 EIF4G1Q04637 1599 aaKnown RBP25.34■■□□□ 1.65
SMPDL3B-204ENST00000466793 SHROOM4Q9ULL8 1493 aa25.32■■□□□ 1.64
SMPDL3B-204ENST00000466793 CECR2Q9BXF3 1484 aa25.29■■□□□ 1.64
SMPDL3B-204ENST00000466793 NCAPD3P42695 1498 aa24.51■■□□□ 1.51
SMPDL3B-204ENST00000466793 ATAD2BQ9ULI0 1458 aa24.49■■□□□ 1.51
SMPDL3B-204ENST00000466793 SMARCA4P51532 1647 aa24.42■■□□□ 1.5
SMPDL3B-204ENST00000466793 NESP48681 1621 aa24.34■■□□□ 1.49
SMPDL3B-204ENST00000466793 MROH2BQ7Z745 1585 aa24.27■■□□□ 1.48
SMPDL3B-204ENST00000466793 DNAJC5Q9H3Z4 198 aa24.26■■□□□ 1.47
SMPDL3B-204ENST00000466793 HMGXB3Q12766 1538 aa24.24■■□□□ 1.47
SMPDL3B-204ENST00000466793 SMARCA2P51531 1590 aa24.2■■□□□ 1.47
SMPDL3B-204ENST00000466793 PEG3Q9GZU2 1588 aa24.16■■□□□ 1.46
SMPDL3B-204ENST00000466793 BAZ1AQ9NRL2 1556 aaPredicted RBP24.16■■□□□ 1.46
SMPDL3B-204ENST00000466793 BAZ1BQ9UIG0 1483 aaKnown RBP24.11■■□□□ 1.45
SMPDL3B-204ENST00000466793 ERCC6Q03468 1493 aa24.08■■□□□ 1.45
SMPDL3B-204ENST00000466793 CUX2O14529 1486 aa24.07■■□□□ 1.44
SMPDL3B-204ENST00000466793 THOC2Q8NI27 1593 aaKnown RBP23.95■■□□□ 1.43
SMPDL3B-204ENST00000466793 WIZO95785 1651 aa23.95■■□□□ 1.42
SMPDL3B-204ENST00000466793 KIF21AQ7Z4S6 1674 aa23.88■■□□□ 1.41
SMPDL3B-204ENST00000466793 LAMC3Q9Y6N6 1575 aa23.83■■□□□ 1.41
SMPDL3B-204ENST00000466793 CADPSQ9ULU8 1353 aa23.74■■□□□ 1.39
SMPDL3B-204ENST00000466793 RSF1Q96T23 1441 aaPredicted RBP23.72■■□□□ 1.39
SMPDL3B-204ENST00000466793 PDS5BQ9NTI5 1447 aa23.64■■□□□ 1.37
SMPDL3B-204ENST00000466793 MRC2Q9UBG0 1479 aa23.56■■□□□ 1.36
SMPDL3B-204ENST00000466793 WDR62O43379 1518 aa23.54■■□□□ 1.36
SMPDL3B-204ENST00000466793 CFTRP13569 1480 aa23.5■■□□□ 1.35
SMPDL3B-204ENST00000466793 TOP2AP11388 1531 aaKnown RBP23.49■■□□□ 1.35
SMPDL3B-204ENST00000466793 FANCD2Q9BXW9 1451 aa23.48■■□□□ 1.35
SMPDL3B-204ENST00000466793 URB2Q14146 1524 aaKnown RBP23.43■■□□□ 1.34
SMPDL3B-204ENST00000466793 CEP164Q9UPV0 1460 aa23.41■■□□□ 1.34
SMPDL3B-204ENST00000466793 CCDC88BA6NC98 1476 aa23.35■■□□□ 1.33
SMPDL3B-204ENST00000466793 ZNF608Q9ULD9 1512 aaPredicted RBP23.18■■□□□ 1.3
SMPDL3B-204ENST00000466793 TRIM41Q8WV44 630 aa23.15■■□□□ 1.3
SMPDL3B-204ENST00000466793 PRDM2Q13029 1718 aa23.11■■□□□ 1.29
SMPDL3B-204ENST00000466793 TOPBP1Q92547 1522 aa23.08■■□□□ 1.28
SMPDL3B-204ENST00000466793 OSCARQ8IYS5 282 aa23■■□□□ 1.27
SMPDL3B-204ENST00000466793 IFT140Q96RY7 1462 aa22.94■■□□□ 1.26
SMPDL3B-204ENST00000466793 TARBP1Q13395 1621 aaKnown RBP22.93■■□□□ 1.26
SMPDL3B-204ENST00000466793 AQRO60306 1485 aaKnown RBP eCLIP22.92■■□□□ 1.26
SMPDL3B-204ENST00000466793 DNMBPQ6XZF7 1577 aa22.9■■□□□ 1.26
SMPDL3B-204ENST00000466793 EIF4G3O43432 1585 aaKnown RBP22.89■■□□□ 1.25
SMPDL3B-204ENST00000466793 RAD54L2Q9Y4B4 1467 aa22.88■■□□□ 1.25
SMPDL3B-204ENST00000466793 RIMBP3CA6NJZ7 1639 aa22.85■■□□□ 1.25
SMPDL3B-204ENST00000466793 RIMBP3BA6NNM3 1639 aa22.85■■□□□ 1.25
SMPDL3B-204ENST00000466793 RIMBP3Q9UFD9 1639 aa22.85■■□□□ 1.25
SMPDL3B-204ENST00000466793 POLA1P09884 1462 aaPredicted RBP22.85■■□□□ 1.25
SMPDL3B-204ENST00000466793 CUX1P39880 1505 aa22.77■■□□□ 1.24
SMPDL3B-204ENST00000466793 TDRD9Q8NDG6 1382 aaKnown RBP22.76■■□□□ 1.23
SMPDL3B-204ENST00000466793 ARHGEF11O15085 1522 aa22.75■■□□□ 1.23
SMPDL3B-204ENST00000466793 ABCC8Q09428 1581 aa22.74■■□□□ 1.23
SMPDL3B-204ENST00000466793 CHD1O14646 1710 aa22.74■■□□□ 1.23
SMPDL3B-204ENST00000466793 FGD5Q6ZNL6 1462 aa22.7■■□□□ 1.22
SMPDL3B-204ENST00000466793 SOGA1O94964 1423 aa22.68■■□□□ 1.22
SMPDL3B-204ENST00000466793 ARAP1Q96P48 1450 aa22.6■■□□□ 1.21
SMPDL3B-204ENST00000466793 SUPT5HO00267 1087 aaKnown RBP22.59■■□□□ 1.21
SMPDL3B-204ENST00000466793 SNAPC4Q5SXM2 1469 aa22.59■■□□□ 1.21
SMPDL3B-204ENST00000466793 CYB5RLQ6IPT4 315 aa22.58■■□□□ 1.21
SMPDL3B-204ENST00000466793 FBLN2P98095 1184 aa22.57■■□□□ 1.2
SMPDL3B-204ENST00000466793 WDR97A6NE52 1622 aa22.56■■□□□ 1.2
SMPDL3B-204ENST00000466793 CLASP1Q7Z460 1538 aa22.52■■□□□ 1.19
SMPDL3B-204ENST00000466793 GRIN2BQ13224 1484 aa22.41■■□□□ 1.18
SMPDL3B-204ENST00000466793 ABCA5Q8WWZ7 1642 aa22.39■■□□□ 1.18
SMPDL3B-204ENST00000466793 ABCA10Q8WWZ4 1543 aa22.39■■□□□ 1.17
SMPDL3B-204ENST00000466793 MAGI1Q96QZ7 1491 aaPredicted RBP22.39■■□□□ 1.17
SMPDL3B-204ENST00000466793 GAPVD1Q14C86 1478 aa22.38■■□□□ 1.17
SMPDL3B-204ENST00000466793 PBRM1Q86U86 1689 aa22.38■■□□□ 1.17
SMPDL3B-204ENST00000466793 SYNJ1O43426 1573 aa22.38■■□□□ 1.17
SMPDL3B-204ENST00000466793 SYNJ2O15056 1496 aa22.36■■□□□ 1.17
SMPDL3B-204ENST00000466793 ERCC6L2Q5T890 1561 aa22.36■■□□□ 1.17
SMPDL3B-204ENST00000466793 CHMP7Q8WUX9 453 aaPredicted RBP22.35■■□□□ 1.17
SMPDL3B-204ENST00000466793 BIVM-ERCC5R4GMW8 1640 aa22.26■■□□□ 1.15
SMPDL3B-204ENST00000466793 TOP2BQ02880 1626 aa22.25■■□□□ 1.15
SMPDL3B-204ENST00000466793 CEP170Q5SW79 1584 aa22.24■■□□□ 1.15
SMPDL3B-204ENST00000466793 WRNQ14191 1432 aaPredicted RBP eCLIP22.23■■□□□ 1.15
SMPDL3B-204ENST00000466793 GRIN2AQ12879 1464 aa22.2■■□□□ 1.14
SMPDL3B-204ENST00000466793 ADAMTS12P58397 1594 aa22.2■■□□□ 1.14
SMPDL3B-204ENST00000466793 TRHP20396 242 aaPredicted RBP22.19■■□□□ 1.14
SMPDL3B-204ENST00000466793 NUP160Q12769 1436 aa22.17■■□□□ 1.14
SMPDL3B-204ENST00000466793 SHROOM2Q13796 1616 aa22.07■■□□□ 1.12
SMPDL3B-204ENST00000466793 FHAD1B1AJZ9 1412 aa22.06■■□□□ 1.12
SMPDL3B-204ENST00000466793 ERICH3Q5RHP9 1530 aa22.02■■□□□ 1.12
SMPDL3B-204ENST00000466793 IGF1RP08069 1367 aa21.93■■□□□ 1.1
SMPDL3B-204ENST00000466793 PRG4Q92954 1404 aaPredicted RBP21.93■■□□□ 1.1
SMPDL3B-204ENST00000466793 JPH4Q96JJ6 628 aa21.9■■□□□ 1.1
SMPDL3B-204ENST00000466793 RUSC2Q8N2Y8 1516 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms