RNA–Protein interactions for RNA: ENST00000466579.1

SDCCAG3-208, Transcript of Serologically defined colon cancer antigen 3, humanhuman

TSL 1 (best)

Gene SDCCAG3, Length 496 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCCAG3-208ENST00000466579 NISCHQ9Y2I1 1504 aa23.16■■□□□ 1.3
SDCCAG3-208ENST00000466579 CCDC180Q9P1Z9 1646 aa20.61■□□□□ 0.89
SDCCAG3-208ENST00000466579 ABCC9O60706 1549 aa20.02■□□□□ 0.8
SDCCAG3-208ENST00000466579 AEBP2Q6ZN18 517 aaPredicted RBP19.38■□□□□ 0.69
SDCCAG3-208ENST00000466579 NACADO15069 1562 aa19.36■□□□□ 0.69
SDCCAG3-208ENST00000466579 RB1CC1Q8TDY2 1594 aa19.35■□□□□ 0.69
SDCCAG3-208ENST00000466579 MYO15BQ96JP2 1530 aa19.31■□□□□ 0.68
SDCCAG3-208ENST00000466579 ZCCHC6Q5VYS8 1495 aaKnown RBP19.31■□□□□ 0.68
SDCCAG3-208ENST00000466579 DCAF1Q9Y4B6 1507 aa19.23■□□□□ 0.67
SDCCAG3-208ENST00000466579 DCAF8L2P0C7V8 631 aa19.15■□□□□ 0.66
SDCCAG3-208ENST00000466579 UNC13AQ9UPW8 1703 aa18.93■□□□□ 0.62
SDCCAG3-208ENST00000466579 BICRAQ9NZM4 1560 aa18.8■□□□□ 0.6
SDCCAG3-208ENST00000466579 SCRIBQ14160 1630 aa18.71■□□□□ 0.59
SDCCAG3-208ENST00000466579 PABPN1Q86U42 306 aaKnown RBP eCLIP18.69■□□□□ 0.58
SDCCAG3-208ENST00000466579 SHROOM4Q9ULL8 1493 aa18.65■□□□□ 0.58
SDCCAG3-208ENST00000466579 DNAJC5BQ9UF47 199 aa18.39■□□□□ 0.53
SDCCAG3-208ENST00000466579 EIF4G1Q04637 1599 aaKnown RBP18.26■□□□□ 0.51
SDCCAG3-208ENST00000466579 CC2D2AQ9P2K1 1620 aa18.17■□□□□ 0.5
SDCCAG3-208ENST00000466579 CHIC1Q5VXU3 224 aa18.14■□□□□ 0.49
SDCCAG3-208ENST00000466579 CECR2Q9BXF3 1484 aa18.02■□□□□ 0.48
SDCCAG3-208ENST00000466579 SMARCA4P51532 1647 aa17.96■□□□□ 0.47
SDCCAG3-208ENST00000466579 BAZ1AQ9NRL2 1556 aaPredicted RBP17.94■□□□□ 0.46
SDCCAG3-208ENST00000466579 NCAPD3P42695 1498 aa17.87■□□□□ 0.45
SDCCAG3-208ENST00000466579 ATAD2BQ9ULI0 1458 aa17.85■□□□□ 0.45
SDCCAG3-208ENST00000466579 PEG3Q9GZU2 1588 aa17.84■□□□□ 0.45
SDCCAG3-208ENST00000466579 SMARCA2P51531 1590 aa17.83■□□□□ 0.45
SDCCAG3-208ENST00000466579 MROH2BQ7Z745 1585 aa17.83■□□□□ 0.44
SDCCAG3-208ENST00000466579 HMGXB3Q12766 1538 aa17.78■□□□□ 0.44
SDCCAG3-208ENST00000466579 BAZ1BQ9UIG0 1483 aaKnown RBP17.67■□□□□ 0.42
SDCCAG3-208ENST00000466579 RSF1Q96T23 1441 aaPredicted RBP17.64■□□□□ 0.42
SDCCAG3-208ENST00000466579 WIZO95785 1651 aa17.62■□□□□ 0.41
SDCCAG3-208ENST00000466579 TOP2AP11388 1531 aaKnown RBP17.47■□□□□ 0.39
SDCCAG3-208ENST00000466579 LAMC3Q9Y6N6 1575 aa17.37■□□□□ 0.37
SDCCAG3-208ENST00000466579 NESP48681 1621 aa17.36■□□□□ 0.37
SDCCAG3-208ENST00000466579 CADPSQ9ULU8 1353 aa17.31■□□□□ 0.36
SDCCAG3-208ENST00000466579 CFTRP13569 1480 aa17.24■□□□□ 0.35
SDCCAG3-208ENST00000466579 ERCC6Q03468 1493 aa17.24■□□□□ 0.35
SDCCAG3-208ENST00000466579 CCDC88BA6NC98 1476 aa17.24■□□□□ 0.35
SDCCAG3-208ENST00000466579 PDS5BQ9NTI5 1447 aa17.22■□□□□ 0.35
SDCCAG3-208ENST00000466579 KIF21AQ7Z4S6 1674 aa17.18■□□□□ 0.34
SDCCAG3-208ENST00000466579 THOC2Q8NI27 1593 aaKnown RBP17.15■□□□□ 0.34
SDCCAG3-208ENST00000466579 CUX2O14529 1486 aa17.14■□□□□ 0.33
SDCCAG3-208ENST00000466579 PRDM2Q13029 1718 aa17.13■□□□□ 0.33
SDCCAG3-208ENST00000466579 FANCD2Q9BXW9 1451 aa17.09■□□□□ 0.33
SDCCAG3-208ENST00000466579 SUPT5HO00267 1087 aaKnown RBP17.07■□□□□ 0.32
SDCCAG3-208ENST00000466579 CEP164Q9UPV0 1460 aa17.06■□□□□ 0.32
SDCCAG3-208ENST00000466579 MRC2Q9UBG0 1479 aa17.05■□□□□ 0.32
SDCCAG3-208ENST00000466579 WDR62O43379 1518 aa17.02■□□□□ 0.32
SDCCAG3-208ENST00000466579 URB2Q14146 1524 aaKnown RBP16.94■□□□□ 0.3
SDCCAG3-208ENST00000466579 ABCC8Q09428 1581 aa16.86■□□□□ 0.29
SDCCAG3-208ENST00000466579 TOPBP1Q92547 1522 aa16.84■□□□□ 0.29
SDCCAG3-208ENST00000466579 DNMBPQ6XZF7 1577 aa16.84■□□□□ 0.29
SDCCAG3-208ENST00000466579 CUX1P39880 1505 aa16.73■□□□□ 0.27
SDCCAG3-208ENST00000466579 IFT140Q96RY7 1462 aa16.73■□□□□ 0.27
SDCCAG3-208ENST00000466579 POLA1P09884 1462 aaPredicted RBP16.7■□□□□ 0.26
SDCCAG3-208ENST00000466579 TARBP1Q13395 1621 aaKnown RBP16.68■□□□□ 0.26
SDCCAG3-208ENST00000466579 FGD5Q6ZNL6 1462 aa16.65■□□□□ 0.26
SDCCAG3-208ENST00000466579 ZNF608Q9ULD9 1512 aaPredicted RBP16.63■□□□□ 0.25
SDCCAG3-208ENST00000466579 BIVM-ERCC5R4GMW8 1640 aa16.62■□□□□ 0.25
SDCCAG3-208ENST00000466579 SENP3Q9H4L4 574 aaPredicted RBP16.61■□□□□ 0.25
SDCCAG3-208ENST00000466579 TOP2BQ02880 1626 aa16.6■□□□□ 0.25
SDCCAG3-208ENST00000466579 SOGA1O94964 1423 aa16.6■□□□□ 0.25
SDCCAG3-208ENST00000466579 WRNQ14191 1432 aaPredicted RBP eCLIP16.6■□□□□ 0.25
SDCCAG3-208ENST00000466579 WDR97A6NE52 1622 aa16.59■□□□□ 0.25
SDCCAG3-208ENST00000466579 RAD54L2Q9Y4B4 1467 aa16.59■□□□□ 0.25
SDCCAG3-208ENST00000466579 SYNJ1O43426 1573 aa16.58■□□□□ 0.24
SDCCAG3-208ENST00000466579 EIF4G3O43432 1585 aaKnown RBP16.58■□□□□ 0.24
SDCCAG3-208ENST00000466579 DNAJC5Q9H3Z4 198 aa16.55■□□□□ 0.24
SDCCAG3-208ENST00000466579 AQRO60306 1485 aaKnown RBP eCLIP16.53■□□□□ 0.244e-10■■■■■ 27.7
SDCCAG3-208ENST00000466579 ABCA10Q8WWZ4 1543 aa16.52■□□□□ 0.24
SDCCAG3-208ENST00000466579 TDRD9Q8NDG6 1382 aaKnown RBP16.49■□□□□ 0.23
SDCCAG3-208ENST00000466579 ABCA5Q8WWZ7 1642 aa16.46■□□□□ 0.23
SDCCAG3-208ENST00000466579 GRIN2BQ13224 1484 aa16.42■□□□□ 0.22
SDCCAG3-208ENST00000466579 GAPVD1Q14C86 1478 aa16.42■□□□□ 0.22
SDCCAG3-208ENST00000466579 MAGI1Q96QZ7 1491 aaPredicted RBP16.41■□□□□ 0.22
SDCCAG3-208ENST00000466579 PBRM1Q86U86 1689 aa16.4■□□□□ 0.22
SDCCAG3-208ENST00000466579 SNAPC4Q5SXM2 1469 aa16.38■□□□□ 0.21
SDCCAG3-208ENST00000466579 OSCARQ8IYS5 282 aa16.38■□□□□ 0.21
SDCCAG3-208ENST00000466579 CHD1O14646 1710 aa16.36■□□□□ 0.21
SDCCAG3-208ENST00000466579 PHF23Q9BUL5 403 aaPredicted RBP16.35■□□□□ 0.21
SDCCAG3-208ENST00000466579 SYNJ2O15056 1496 aa16.33■□□□□ 0.2
SDCCAG3-208ENST00000466579 ERICH3Q5RHP9 1530 aa16.33■□□□□ 0.2
SDCCAG3-208ENST00000466579 ADAMTS12P58397 1594 aa16.29■□□□□ 0.2
SDCCAG3-208ENST00000466579 KIF27Q86VH2 1401 aa16.26■□□□□ 0.19
SDCCAG3-208ENST00000466579 FHAD1B1AJZ9 1412 aa16.25■□□□□ 0.19
SDCCAG3-208ENST00000466579 CHMP7Q8WUX9 453 aaPredicted RBP16.24■□□□□ 0.19
SDCCAG3-208ENST00000466579 FBLN2P98095 1184 aa16.23■□□□□ 0.19
SDCCAG3-208ENST00000466579 CLASP1Q7Z460 1538 aa16.23■□□□□ 0.19
SDCCAG3-208ENST00000466579 GRIN2AQ12879 1464 aa16.22■□□□□ 0.19
SDCCAG3-208ENST00000466579 IGF1RP08069 1367 aa16.21■□□□□ 0.19
SDCCAG3-208ENST00000466579 NUP160Q12769 1436 aa16.18■□□□□ 0.18
SDCCAG3-208ENST00000466579 CUL7Q14999 1698 aa16.18■□□□□ 0.18
SDCCAG3-208ENST00000466579 TRIM41Q8WV44 630 aa16.16■□□□□ 0.18
SDCCAG3-208ENST00000466579 RIMBP3CA6NJZ7 1639 aa16.14■□□□□ 0.17
SDCCAG3-208ENST00000466579 RIMBP3BA6NNM3 1639 aa16.14■□□□□ 0.17
SDCCAG3-208ENST00000466579 RIMBP3Q9UFD9 1639 aa16.14■□□□□ 0.17
SDCCAG3-208ENST00000466579 ARHGEF11O15085 1522 aa16.14■□□□□ 0.17
SDCCAG3-208ENST00000466579 CEP170Q5SW79 1584 aa16.13■□□□□ 0.17
SDCCAG3-208ENST00000466579 RUSC2Q8N2Y8 1516 aa16.1■□□□□ 0.17
SDCCAG3-208ENST00000466579 CARMIL1Q5VZK9 1371 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms