RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 NISCHQ9Y2I1 1504 aa47.91■■■■■ 5.26
COL9A3-206ENST00000466532 CCDC180Q9P1Z9 1646 aa43.04■■■■■ 4.48
COL9A3-206ENST00000466532 ABCC9O60706 1549 aa42.79■■■■■ 4.44
COL9A3-206ENST00000466532 RB1CC1Q8TDY2 1594 aa40.84■■■■■ 4.13
COL9A3-206ENST00000466532 NACADO15069 1562 aa40.57■■■■■ 4.09
COL9A3-206ENST00000466532 DCAF8L2P0C7V8 631 aa40.33■■■■■ 4.05
COL9A3-206ENST00000466532 UNC13AQ9UPW8 1703 aa40.07■■■■■ 4
COL9A3-206ENST00000466532 MYO15BQ96JP2 1530 aa40.03■■■■■ 4
COL9A3-206ENST00000466532 DNAJC5BQ9UF47 199 aa39.94■■■■□ 3.98
COL9A3-206ENST00000466532 PABPN1Q86U42 306 aaKnown RBP eCLIP39.8■■■■□ 3.961e-11■■□□□ 12.7
COL9A3-206ENST00000466532 ZCCHC6Q5VYS8 1495 aaKnown RBP39.74■■■■□ 3.95
COL9A3-206ENST00000466532 BICRAQ9NZM4 1560 aa39.63■■■■□ 3.94
COL9A3-206ENST00000466532 DCAF1Q9Y4B6 1507 aa39.58■■■■□ 3.93
COL9A3-206ENST00000466532 SCRIBQ14160 1630 aa39.19■■■■□ 3.86
COL9A3-206ENST00000466532 SHROOM4Q9ULL8 1493 aa39.09■■■■□ 3.85
COL9A3-206ENST00000466532 CC2D2AQ9P2K1 1620 aa38.71■■■■□ 3.79
COL9A3-206ENST00000466532 EIF4G1Q04637 1599 aaKnown RBP38.65■■■■□ 3.78
COL9A3-206ENST00000466532 CECR2Q9BXF3 1484 aa38.52■■■■□ 3.76
COL9A3-206ENST00000466532 SMARCA4P51532 1647 aa37.39■■■■□ 3.58
COL9A3-206ENST00000466532 NCAPD3P42695 1498 aa37.39■■■■□ 3.58
COL9A3-206ENST00000466532 ATAD2BQ9ULI0 1458 aa37.32■■■■□ 3.56
COL9A3-206ENST00000466532 SMARCA2P51531 1590 aa37.26■■■■□ 3.56
COL9A3-206ENST00000466532 BAZ1AQ9NRL2 1556 aaPredicted RBP37.2■■■■□ 3.55
COL9A3-206ENST00000466532 HMGXB3Q12766 1538 aa37.19■■■■□ 3.54
COL9A3-206ENST00000466532 PEG3Q9GZU2 1588 aa37■■■■□ 3.51
COL9A3-206ENST00000466532 BAZ1BQ9UIG0 1483 aaKnown RBP37■■■■□ 3.51
COL9A3-206ENST00000466532 ERCC6Q03468 1493 aa36.94■■■■□ 3.5
COL9A3-206ENST00000466532 MROH2BQ7Z745 1585 aa36.91■■■■□ 3.5
COL9A3-206ENST00000466532 CUX2O14529 1486 aa36.82■■■■□ 3.48
COL9A3-206ENST00000466532 NESP48681 1621 aa36.81■■■■□ 3.48
COL9A3-206ENST00000466532 LAMC3Q9Y6N6 1575 aa36.61■■■■□ 3.45
COL9A3-206ENST00000466532 DNAJC5Q9H3Z4 198 aa36.57■■■■□ 3.44
COL9A3-206ENST00000466532 WIZO95785 1651 aa36.55■■■■□ 3.44
COL9A3-206ENST00000466532 THOC2Q8NI27 1593 aaKnown RBP36.47■■■■□ 3.43
COL9A3-206ENST00000466532 KIF21AQ7Z4S6 1674 aa36.46■■■■□ 3.43
COL9A3-206ENST00000466532 PDS5BQ9NTI5 1447 aa36.33■■■■□ 3.41
COL9A3-206ENST00000466532 CADPSQ9ULU8 1353 aa36.26■■■■□ 3.39
COL9A3-206ENST00000466532 RSF1Q96T23 1441 aaPredicted RBP36.17■■■■□ 3.38
COL9A3-206ENST00000466532 TOP2AP11388 1531 aaKnown RBP36.06■■■■□ 3.36
COL9A3-206ENST00000466532 MRC2Q9UBG0 1479 aa36.03■■■■□ 3.36
COL9A3-206ENST00000466532 WDR62O43379 1518 aa35.96■■■■□ 3.35
COL9A3-206ENST00000466532 CEP164Q9UPV0 1460 aa35.92■■■■□ 3.34
COL9A3-206ENST00000466532 CFTRP13569 1480 aa35.89■■■■□ 3.34
COL9A3-206ENST00000466532 FANCD2Q9BXW9 1451 aa35.88■■■■□ 3.33
COL9A3-206ENST00000466532 PRDM2Q13029 1718 aa35.77■■■■□ 3.32
COL9A3-206ENST00000466532 CCDC88BA6NC98 1476 aa35.6■■■■□ 3.29
COL9A3-206ENST00000466532 URB2Q14146 1524 aaKnown RBP35.59■■■■□ 3.29
COL9A3-206ENST00000466532 TOPBP1Q92547 1522 aa35.23■■■■□ 3.23
COL9A3-206ENST00000466532 IFT140Q96RY7 1462 aa35.19■■■■□ 3.22
COL9A3-206ENST00000466532 ABCC8Q09428 1581 aa35.17■■■■□ 3.22
COL9A3-206ENST00000466532 DNMBPQ6XZF7 1577 aa35.15■■■■□ 3.22
COL9A3-206ENST00000466532 ZNF608Q9ULD9 1512 aaPredicted RBP35.11■■■■□ 3.21
COL9A3-206ENST00000466532 OSCARQ8IYS5 282 aa35.11■■■■□ 3.21
COL9A3-206ENST00000466532 TRIM41Q8WV44 630 aa35.06■■■■□ 3.2
COL9A3-206ENST00000466532 EIF4G3O43432 1585 aaKnown RBP35.01■■■■□ 3.2
COL9A3-206ENST00000466532 TARBP1Q13395 1621 aaKnown RBP34.95■■■■□ 3.19
COL9A3-206ENST00000466532 POLA1P09884 1462 aaPredicted RBP34.87■■■■□ 3.17
COL9A3-206ENST00000466532 AQRO60306 1485 aaKnown RBP eCLIP34.8■■■■□ 3.166e-6■■■■□ 23.2
COL9A3-206ENST00000466532 CHD1O14646 1710 aa34.8■■■■□ 3.16
COL9A3-206ENST00000466532 RIMBP3CA6NJZ7 1639 aa34.77■■■■□ 3.16
COL9A3-206ENST00000466532 RIMBP3BA6NNM3 1639 aa34.77■■■■□ 3.16
COL9A3-206ENST00000466532 RIMBP3Q9UFD9 1639 aa34.77■■■■□ 3.16
COL9A3-206ENST00000466532 RAD54L2Q9Y4B4 1467 aa34.74■■■■□ 3.15
COL9A3-206ENST00000466532 SOGA1O94964 1423 aa34.69■■■■□ 3.14
COL9A3-206ENST00000466532 FGD5Q6ZNL6 1462 aa34.69■■■■□ 3.14
COL9A3-206ENST00000466532 CUX1P39880 1505 aa34.68■■■■□ 3.14
COL9A3-206ENST00000466532 SUPT5HO00267 1087 aaKnown RBP34.66■■■■□ 3.14
COL9A3-206ENST00000466532 WDR97A6NE52 1622 aa34.62■■■■□ 3.13
COL9A3-206ENST00000466532 ARHGEF11O15085 1522 aa34.61■■■■□ 3.13
COL9A3-206ENST00000466532 TDRD9Q8NDG6 1382 aaKnown RBP34.6■■■■□ 3.13
COL9A3-206ENST00000466532 FBLN2P98095 1184 aa34.54■■■■□ 3.12
COL9A3-206ENST00000466532 SNAPC4Q5SXM2 1469 aa34.48■■■■□ 3.11
COL9A3-206ENST00000466532 PBRM1Q86U86 1689 aa34.42■■■■□ 3.1
COL9A3-206ENST00000466532 GRIN2BQ13224 1484 aa34.39■■■■□ 3.1
COL9A3-206ENST00000466532 MAGI1Q96QZ7 1491 aaPredicted RBP34.39■■■■□ 3.1
COL9A3-206ENST00000466532 SYNJ1O43426 1573 aa34.31■■■■□ 3.08
COL9A3-206ENST00000466532 CHMP7Q8WUX9 453 aaPredicted RBP34.3■■■■□ 3.08
COL9A3-206ENST00000466532 GAPVD1Q14C86 1478 aa34.3■■■■□ 3.08
COL9A3-206ENST00000466532 CYB5RLQ6IPT4 315 aa34.29■■■■□ 3.08
COL9A3-206ENST00000466532 ABCA5Q8WWZ7 1642 aa34.29■■■■□ 3.08
COL9A3-206ENST00000466532 CLASP1Q7Z460 1538 aa34.29■■■■□ 3.08
COL9A3-206ENST00000466532 ABCA10Q8WWZ4 1543 aa34.29■■■■□ 3.08
COL9A3-206ENST00000466532 SYNJ2O15056 1496 aa34.27■■■■□ 3.08
COL9A3-206ENST00000466532 ARAP1Q96P48 1450 aa34.27■■■■□ 3.08
COL9A3-206ENST00000466532 BIVM-ERCC5R4GMW8 1640 aa34.24■■■■□ 3.07
COL9A3-206ENST00000466532 TOP2BQ02880 1626 aa34.2■■■■□ 3.07
COL9A3-206ENST00000466532 WRNQ14191 1432 aaPredicted RBP eCLIP34.15■■■■□ 3.06
COL9A3-206ENST00000466532 ADAMTS12P58397 1594 aa34.02■■■■□ 3.04
COL9A3-206ENST00000466532 GRIN2AQ12879 1464 aa33.96■■■■□ 3.03
COL9A3-206ENST00000466532 ERICH3Q5RHP9 1530 aa33.89■■■■□ 3.02
COL9A3-206ENST00000466532 TRHP20396 242 aaPredicted RBP33.88■■■■□ 3.01
COL9A3-206ENST00000466532 CEP170Q5SW79 1584 aa33.87■■■■□ 3.01
COL9A3-206ENST00000466532 FHAD1B1AJZ9 1412 aa33.86■■■■□ 3.01
COL9A3-206ENST00000466532 NUP160Q12769 1436 aa33.82■■■■□ 3
COL9A3-206ENST00000466532 ERCC6L2Q5T890 1561 aa33.77■■■■□ 3
COL9A3-206ENST00000466532 SHROOM2Q13796 1616 aa33.74■■■□□ 2.99
COL9A3-206ENST00000466532 RUSC2Q8N2Y8 1516 aa33.53■■■□□ 2.96
COL9A3-206ENST00000466532 CUL7Q14999 1698 aa33.49■■■□□ 2.95
COL9A3-206ENST00000466532 PRG4Q92954 1404 aaPredicted RBP33.48■■■□□ 2.95
COL9A3-206ENST00000466532 KIF27Q86VH2 1401 aa33.47■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms