RNA–Protein interactions for RNA: ENST00000466416.1

ABCF3-205, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 4

Gene ABCF3, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-205ENST00000466416 NISCHQ9Y2I1 1504 aa23.73■■□□□ 1.39
ABCF3-205ENST00000466416 ABCC9O60706 1549 aa22.06■■□□□ 1.12
ABCF3-205ENST00000466416 CCDC180Q9P1Z9 1646 aa21.47■■□□□ 1.03
ABCF3-205ENST00000466416 DNAJC5BQ9UF47 199 aa21.24■□□□□ 0.99
ABCF3-205ENST00000466416 RB1CC1Q8TDY2 1594 aa20.76■□□□□ 0.91
ABCF3-205ENST00000466416 NACADO15069 1562 aa20.51■□□□□ 0.87
ABCF3-205ENST00000466416 PABPN1Q86U42 306 aaKnown RBP eCLIP20.5■□□□□ 0.87
ABCF3-205ENST00000466416 DCAF8L2P0C7V8 631 aa20.34■□□□□ 0.85
ABCF3-205ENST00000466416 UNC13AQ9UPW8 1703 aa20.16■□□□□ 0.82
ABCF3-205ENST00000466416 BICRAQ9NZM4 1560 aa20.13■□□□□ 0.81
ABCF3-205ENST00000466416 MYO15BQ96JP2 1530 aa20.07■□□□□ 0.8
ABCF3-205ENST00000466416 DNAJC5Q9H3Z4 198 aa19.98■□□□□ 0.79
ABCF3-205ENST00000466416 CECR2Q9BXF3 1484 aa19.96■□□□□ 0.79
ABCF3-205ENST00000466416 SHROOM4Q9ULL8 1493 aa19.89■□□□□ 0.77
ABCF3-205ENST00000466416 CC2D2AQ9P2K1 1620 aa19.87■□□□□ 0.77
ABCF3-205ENST00000466416 EIF4G1Q04637 1599 aaKnown RBP19.7■□□□□ 0.74
ABCF3-205ENST00000466416 DCAF1Q9Y4B6 1507 aa19.59■□□□□ 0.73
ABCF3-205ENST00000466416 ZCCHC6Q5VYS8 1495 aaKnown RBP19.52■□□□□ 0.72
ABCF3-205ENST00000466416 SCRIBQ14160 1630 aa19.51■□□□□ 0.71
ABCF3-205ENST00000466416 CUX2O14529 1486 aa19.28■□□□□ 0.68
ABCF3-205ENST00000466416 ERCC6Q03468 1493 aa19.11■□□□□ 0.65
ABCF3-205ENST00000466416 NCAPD3P42695 1498 aa18.97■□□□□ 0.63
ABCF3-205ENST00000466416 TRIM41Q8WV44 630 aa18.81■□□□□ 0.6
ABCF3-205ENST00000466416 ATAD2BQ9ULI0 1458 aa18.8■□□□□ 0.6
ABCF3-205ENST00000466416 NESP48681 1621 aa18.77■□□□□ 0.6
ABCF3-205ENST00000466416 HMGXB3Q12766 1538 aa18.72■□□□□ 0.59
ABCF3-205ENST00000466416 SMARCA2P51531 1590 aa18.72■□□□□ 0.59
ABCF3-205ENST00000466416 THOC2Q8NI27 1593 aaKnown RBP18.65■□□□□ 0.58
ABCF3-205ENST00000466416 SMARCA4P51532 1647 aa18.58■□□□□ 0.56
ABCF3-205ENST00000466416 LAMC3Q9Y6N6 1575 aa18.58■□□□□ 0.56
ABCF3-205ENST00000466416 BAZ1BQ9UIG0 1483 aaKnown RBP18.58■□□□□ 0.56
ABCF3-205ENST00000466416 PDS5BQ9NTI5 1447 aa18.56■□□□□ 0.56
ABCF3-205ENST00000466416 BAZ1AQ9NRL2 1556 aaPredicted RBP18.45■□□□□ 0.54
ABCF3-205ENST00000466416 KIF21AQ7Z4S6 1674 aa18.44■□□□□ 0.54
ABCF3-205ENST00000466416 PEG3Q9GZU2 1588 aa18.44■□□□□ 0.54
ABCF3-205ENST00000466416 OSCARQ8IYS5 282 aa18.39■□□□□ 0.53
ABCF3-205ENST00000466416 CADPSQ9ULU8 1353 aa18.38■□□□□ 0.53
ABCF3-205ENST00000466416 MRC2Q9UBG0 1479 aa18.38■□□□□ 0.53
ABCF3-205ENST00000466416 WDR62O43379 1518 aa18.32■□□□□ 0.52
ABCF3-205ENST00000466416 MROH2BQ7Z745 1585 aa18.25■□□□□ 0.51
ABCF3-205ENST00000466416 CEP164Q9UPV0 1460 aa18.19■□□□□ 0.5
ABCF3-205ENST00000466416 FANCD2Q9BXW9 1451 aa18.12■□□□□ 0.49
ABCF3-205ENST00000466416 RIMBP3CA6NJZ7 1639 aa18.05■□□□□ 0.48
ABCF3-205ENST00000466416 RIMBP3BA6NNM3 1639 aa18.05■□□□□ 0.48
ABCF3-205ENST00000466416 RIMBP3Q9UFD9 1639 aa18.05■□□□□ 0.48
ABCF3-205ENST00000466416 CFTRP13569 1480 aa18.02■□□□□ 0.48
ABCF3-205ENST00000466416 URB2Q14146 1524 aaKnown RBP17.98■□□□□ 0.47
ABCF3-205ENST00000466416 ARHGEF11O15085 1522 aa17.98■□□□□ 0.47
ABCF3-205ENST00000466416 CYB5RLQ6IPT4 315 aa17.97■□□□□ 0.47
ABCF3-205ENST00000466416 WIZO95785 1651 aa17.96■□□□□ 0.47
ABCF3-205ENST00000466416 TRHP20396 242 aaPredicted RBP17.95■□□□□ 0.46
ABCF3-205ENST00000466416 IFT140Q96RY7 1462 aa17.87■□□□□ 0.45
ABCF3-205ENST00000466416 AEBP2Q6ZN18 517 aaPredicted RBP17.86■□□□□ 0.45
ABCF3-205ENST00000466416 ZNF608Q9ULD9 1512 aaPredicted RBP17.85■□□□□ 0.45
ABCF3-205ENST00000466416 ARAP1Q96P48 1450 aa17.76■□□□□ 0.43
ABCF3-205ENST00000466416 RSF1Q96T23 1441 aaPredicted RBP17.73■□□□□ 0.43
ABCF3-205ENST00000466416 TOP2AP11388 1531 aaKnown RBP17.73■□□□□ 0.43
ABCF3-205ENST00000466416 TOPBP1Q92547 1522 aa17.7■□□□□ 0.42
ABCF3-205ENST00000466416 ABCC8Q09428 1581 aa17.7■□□□□ 0.42
ABCF3-205ENST00000466416 FBLN2P98095 1184 aa17.69■□□□□ 0.42
ABCF3-205ENST00000466416 EIF4G3O43432 1585 aaKnown RBP17.67■□□□□ 0.42
ABCF3-205ENST00000466416 AQRO60306 1485 aaKnown RBP eCLIP17.65■□□□□ 0.425e-8■■■■□ 26.4
ABCF3-205ENST00000466416 PRDM2Q13029 1718 aa17.65■□□□□ 0.42
ABCF3-205ENST00000466416 CHD1O14646 1710 aa17.61■□□□□ 0.41
ABCF3-205ENST00000466416 CCDC88BA6NC98 1476 aa17.57■□□□□ 0.4
ABCF3-205ENST00000466416 DNMBPQ6XZF7 1577 aa17.57■□□□□ 0.4
ABCF3-205ENST00000466416 TARBP1Q13395 1621 aaKnown RBP17.55■□□□□ 0.4
ABCF3-205ENST00000466416 CHMP7Q8WUX9 453 aaPredicted RBP17.5■□□□□ 0.39
ABCF3-205ENST00000466416 POLA1P09884 1462 aaPredicted RBP17.49■□□□□ 0.39
ABCF3-205ENST00000466416 TDRD9Q8NDG6 1382 aaKnown RBP17.47■□□□□ 0.39
ABCF3-205ENST00000466416 CLASP1Q7Z460 1538 aa17.47■□□□□ 0.39
ABCF3-205ENST00000466416 SOGA1O94964 1423 aa17.45■□□□□ 0.38
ABCF3-205ENST00000466416 RAD54L2Q9Y4B4 1467 aa17.44■□□□□ 0.38
ABCF3-205ENST00000466416 SYNJ1O43426 1573 aa17.43■□□□□ 0.38
ABCF3-205ENST00000466416 SNAPC4Q5SXM2 1469 aa17.43■□□□□ 0.38
ABCF3-205ENST00000466416 MAGI1Q96QZ7 1491 aaPredicted RBP17.39■□□□□ 0.37
ABCF3-205ENST00000466416 WDR97A6NE52 1622 aa17.38■□□□□ 0.37
ABCF3-205ENST00000466416 GAPVD1Q14C86 1478 aa17.37■□□□□ 0.37
ABCF3-205ENST00000466416 SYNJ2O15056 1496 aa17.34■□□□□ 0.37
ABCF3-205ENST00000466416 GRIN2BQ13224 1484 aa17.34■□□□□ 0.37
ABCF3-205ENST00000466416 FGD5Q6ZNL6 1462 aa17.29■□□□□ 0.36
ABCF3-205ENST00000466416 CUX1P39880 1505 aa17.17■□□□□ 0.34
ABCF3-205ENST00000466416 ERCC6L2Q5T890 1561 aa17.12■□□□□ 0.33
ABCF3-205ENST00000466416 PBRM1Q86U86 1689 aa17.11■□□□□ 0.33
ABCF3-205ENST00000466416 ILDR1Q86SU0 546 aaPredicted RBP17.11■□□□□ 0.33
ABCF3-205ENST00000466416 GRIN2AQ12879 1464 aa17.09■□□□□ 0.33
ABCF3-205ENST00000466416 ABCA10Q8WWZ4 1543 aa17.09■□□□□ 0.33
ABCF3-205ENST00000466416 CEP170Q5SW79 1584 aa17.08■□□□□ 0.32
ABCF3-205ENST00000466416 NUP160Q12769 1436 aa17.08■□□□□ 0.32
ABCF3-205ENST00000466416 KDM4FA0A1W2PPD8 638 aa17.05■□□□□ 0.32
ABCF3-205ENST00000466416 FAM69CQ0P6D2 419 aa17.05■□□□□ 0.32
ABCF3-205ENST00000466416 KIF13AQ9H1H9 1805 aa17.05■□□□□ 0.32
ABCF3-205ENST00000466416 ABCA5Q8WWZ7 1642 aa17.04■□□□□ 0.32
ABCF3-205ENST00000466416 NPM1P06748 294 aaKnown RBP eCLIP17.02■□□□□ 0.32
ABCF3-205ENST00000466416 ABCC10Q5T3U5 1492 aa17■□□□□ 0.31
ABCF3-205ENST00000466416 SHROOM2Q13796 1616 aa17■□□□□ 0.31
ABCF3-205ENST00000466416 FHAD1B1AJZ9 1412 aa16.98■□□□□ 0.31
ABCF3-205ENST00000466416 JPH4Q96JJ6 628 aa16.97■□□□□ 0.31
ABCF3-205ENST00000466416 PRG4Q92954 1404 aaPredicted RBP16.96■□□□□ 0.31
ABCF3-205ENST00000466416 ADAMTS12P58397 1594 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms