RNA–Protein interactions for RNA: ENST00000466415.1

VPS16-206, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS16, Length 708 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-206ENST00000466415 NISCHQ9Y2I1 1504 aa28.02■■■□□ 2.08
VPS16-206ENST00000466415 CCDC180Q9P1Z9 1646 aa24.64■■□□□ 1.53
VPS16-206ENST00000466415 ZCCHC6Q5VYS8 1495 aaKnown RBP23.5■■□□□ 1.35
VPS16-206ENST00000466415 ABCC9O60706 1549 aa23.49■■□□□ 1.35
VPS16-206ENST00000466415 DCAF8L2P0C7V8 631 aa23.22■■□□□ 1.31
VPS16-206ENST00000466415 DCAF1Q9Y4B6 1507 aa23.19■■□□□ 1.3
VPS16-206ENST00000466415 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
VPS16-206ENST00000466415 NACADO15069 1562 aa22.99■■□□□ 1.27
VPS16-206ENST00000466415 RB1CC1Q8TDY2 1594 aa22.88■■□□□ 1.25
VPS16-206ENST00000466415 SHROOM4Q9ULL8 1493 aa22.66■■□□□ 1.22
VPS16-206ENST00000466415 SCRIBQ14160 1630 aa22.59■■□□□ 1.21
VPS16-206ENST00000466415 UNC13AQ9UPW8 1703 aa22.31■■□□□ 1.16
VPS16-206ENST00000466415 BICRAQ9NZM4 1560 aa22.1■■□□□ 1.13
VPS16-206ENST00000466415 PABPN1Q86U42 306 aaKnown RBP eCLIP22.05■■□□□ 1.125e-7■■■■■ 42.4
VPS16-206ENST00000466415 CECR2Q9BXF3 1484 aa21.75■■□□□ 1.07
VPS16-206ENST00000466415 BAZ1AQ9NRL2 1556 aaPredicted RBP21.71■■□□□ 1.07
VPS16-206ENST00000466415 SUPT5HO00267 1087 aaKnown RBP21.65■■□□□ 1.06
VPS16-206ENST00000466415 SMARCA4P51532 1647 aa21.62■■□□□ 1.05
VPS16-206ENST00000466415 MROH2BQ7Z745 1585 aa21.61■■□□□ 1.05
VPS16-206ENST00000466415 RSF1Q96T23 1441 aaPredicted RBP21.6■■□□□ 1.05
VPS16-206ENST00000466415 EIF4G1Q04637 1599 aaKnown RBP21.51■■□□□ 1.03
VPS16-206ENST00000466415 WIZO95785 1651 aa21.44■■□□□ 1.02
VPS16-206ENST00000466415 SMARCA2P51531 1590 aa21.36■■□□□ 1.01
VPS16-206ENST00000466415 PEG3Q9GZU2 1588 aa21.36■■□□□ 1.01
VPS16-206ENST00000466415 ATAD2BQ9ULI0 1458 aa21.32■■□□□ 1
VPS16-206ENST00000466415 TOP2AP11388 1531 aaKnown RBP21.27■■□□□ 1
VPS16-206ENST00000466415 CC2D2AQ9P2K1 1620 aa21.26■□□□□ 0.99
VPS16-206ENST00000466415 BAZ1BQ9UIG0 1483 aaKnown RBP21.23■□□□□ 0.99
VPS16-206ENST00000466415 HMGXB3Q12766 1538 aa21.18■□□□□ 0.98
VPS16-206ENST00000466415 NCAPD3P42695 1498 aa21.17■□□□□ 0.98
VPS16-206ENST00000466415 CCDC88BA6NC98 1476 aa20.98■□□□□ 0.95
VPS16-206ENST00000466415 DNAJC5BQ9UF47 199 aa20.83■□□□□ 0.93
VPS16-206ENST00000466415 CFTRP13569 1480 aa20.62■□□□□ 0.89
VPS16-206ENST00000466415 CADPSQ9ULU8 1353 aa20.62■□□□□ 0.89
VPS16-206ENST00000466415 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
VPS16-206ENST00000466415 LAMC3Q9Y6N6 1575 aa20.55■□□□□ 0.88
VPS16-206ENST00000466415 CHIC1Q5VXU3 224 aa20.54■□□□□ 0.88
VPS16-206ENST00000466415 NESP48681 1621 aa20.49■□□□□ 0.87
VPS16-206ENST00000466415 ABCC8Q09428 1581 aa20.46■□□□□ 0.87
VPS16-206ENST00000466415 FANCD2Q9BXW9 1451 aa20.42■□□□□ 0.86
VPS16-206ENST00000466415 TRIM41Q8WV44 630 aa20.41■□□□□ 0.86
VPS16-206ENST00000466415 PDS5BQ9NTI5 1447 aa20.41■□□□□ 0.86
VPS16-206ENST00000466415 WRNQ14191 1432 aaPredicted RBP eCLIP20.39■□□□□ 0.85
VPS16-206ENST00000466415 CEP164Q9UPV0 1460 aa20.36■□□□□ 0.85
VPS16-206ENST00000466415 SYNJ1O43426 1573 aa20.3■□□□□ 0.84
VPS16-206ENST00000466415 KIF21AQ7Z4S6 1674 aa20.29■□□□□ 0.84
VPS16-206ENST00000466415 TOP2BQ02880 1626 aa20.26■□□□□ 0.83
VPS16-206ENST00000466415 BIVM-ERCC5R4GMW8 1640 aa20.25■□□□□ 0.83
VPS16-206ENST00000466415 CUX1P39880 1505 aa20.25■□□□□ 0.83
VPS16-206ENST00000466415 ERCC6Q03468 1493 aa20.24■□□□□ 0.83
VPS16-206ENST00000466415 DNMBPQ6XZF7 1577 aa20.21■□□□□ 0.83
VPS16-206ENST00000466415 MRC2Q9UBG0 1479 aa20.17■□□□□ 0.82
VPS16-206ENST00000466415 URB2Q14146 1524 aaKnown RBP20.15■□□□□ 0.82
VPS16-206ENST00000466415 TOPBP1Q92547 1522 aa20.15■□□□□ 0.82
VPS16-206ENST00000466415 FGD5Q6ZNL6 1462 aa20.1■□□□□ 0.81
VPS16-206ENST00000466415 WDR62O43379 1518 aa20.05■□□□□ 0.8
VPS16-206ENST00000466415 THOC2Q8NI27 1593 aaKnown RBP20.04■□□□□ 0.8
VPS16-206ENST00000466415 POLA1P09884 1462 aaPredicted RBP20.03■□□□□ 0.8
VPS16-206ENST00000466415 FAM9AQ8IZU1 332 aaPredicted RBP20■□□□□ 0.79
VPS16-206ENST00000466415 SOGA1O94964 1423 aa20■□□□□ 0.79
VPS16-206ENST00000466415 EEA1Q15075 1411 aa20■□□□□ 0.79
VPS16-206ENST00000466415 RAD54L2Q9Y4B4 1467 aa19.93■□□□□ 0.78
VPS16-206ENST00000466415 KIF27Q86VH2 1401 aa19.93■□□□□ 0.78
VPS16-206ENST00000466415 CUX2O14529 1486 aa19.92■□□□□ 0.78
VPS16-206ENST00000466415 RUSC2Q8N2Y8 1516 aa19.91■□□□□ 0.78
VPS16-206ENST00000466415 ABCA10Q8WWZ4 1543 aa19.91■□□□□ 0.78
VPS16-206ENST00000466415 WDR97A6NE52 1622 aa19.87■□□□□ 0.77
VPS16-206ENST00000466415 IFT140Q96RY7 1462 aa19.87■□□□□ 0.77
VPS16-206ENST00000466415 TARBP1Q13395 1621 aaKnown RBP19.85■□□□□ 0.77
VPS16-206ENST00000466415 CSRNP3Q8WYN3 585 aa19.83■□□□□ 0.77
VPS16-206ENST00000466415 ABCA5Q8WWZ7 1642 aa19.78■□□□□ 0.76
VPS16-206ENST00000466415 TDRD9Q8NDG6 1382 aaKnown RBP19.76■□□□□ 0.75
VPS16-206ENST00000466415 GAPVD1Q14C86 1478 aa19.75■□□□□ 0.75
VPS16-206ENST00000466415 KIF21BO75037 1637 aa19.73■□□□□ 0.75
VPS16-206ENST00000466415 EHMT2Q96KQ7 1210 aa19.72■□□□□ 0.75
VPS16-206ENST00000466415 LOC105371045A0A1W2PR82 267 aa19.71■□□□□ 0.75
VPS16-206ENST00000466415 GOLGA3Q08378 1498 aa19.71■□□□□ 0.75
VPS16-206ENST00000466415 ERICH3Q5RHP9 1530 aa19.7■□□□□ 0.74
VPS16-206ENST00000466415 ZNF608Q9ULD9 1512 aaPredicted RBP19.7■□□□□ 0.74
VPS16-206ENST00000466415 EIF4G3O43432 1585 aaKnown RBP19.7■□□□□ 0.74
VPS16-206ENST00000466415 IGF1RP08069 1367 aa19.69■□□□□ 0.74
VPS16-206ENST00000466415 PBRM1Q86U86 1689 aa19.68■□□□□ 0.74
VPS16-206ENST00000466415 AQRO60306 1485 aaKnown RBP eCLIP19.68■□□□□ 0.741e-8■□□□□ 10.9
VPS16-206ENST00000466415 CUL7Q14999 1698 aa19.68■□□□□ 0.74
VPS16-206ENST00000466415 PRXQ9BXM0 1461 aa19.67■□□□□ 0.74
VPS16-206ENST00000466415 GRIN2BQ13224 1484 aa19.66■□□□□ 0.74
VPS16-206ENST00000466415 CARMIL1Q5VZK9 1371 aa19.64■□□□□ 0.73
VPS16-206ENST00000466415 RAPGEF2Q9Y4G8 1499 aa19.62■□□□□ 0.73
VPS16-206ENST00000466415 UBTFP17480 764 aaKnown RBP19.6■□□□□ 0.73
VPS16-206ENST00000466415 ADAMTS12P58397 1594 aa19.57■□□□□ 0.72
VPS16-206ENST00000466415 SNAPC4Q5SXM2 1469 aa19.56■□□□□ 0.72
VPS16-206ENST00000466415 FHAD1B1AJZ9 1412 aa19.54■□□□□ 0.72
VPS16-206ENST00000466415 TNIKQ9UKE5 1360 aa19.54■□□□□ 0.72
VPS16-206ENST00000466415 MAGI1Q96QZ7 1491 aaPredicted RBP19.53■□□□□ 0.72
VPS16-206ENST00000466415 SYNJ2O15056 1496 aa19.44■□□□□ 0.7
VPS16-206ENST00000466415 CEP162Q5TB80 1403 aa19.42■□□□□ 0.7
VPS16-206ENST00000466415 GRIN2AQ12879 1464 aa19.41■□□□□ 0.7
VPS16-206ENST00000466415 CTTNBP2Q8WZ74 1663 aa19.4■□□□□ 0.7
VPS16-206ENST00000466415 CHMP7Q8WUX9 453 aaPredicted RBP19.4■□□□□ 0.7
VPS16-206ENST00000466415 FBLN2P98095 1184 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms