RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 NISCHQ9Y2I1 1504 aa52.15■■■■■ 5.94
COL6A1-203ENST00000466285 CCDC180Q9P1Z9 1646 aa46.83■■■■■ 5.09
COL6A1-203ENST00000466285 ABCC9O60706 1549 aa46.82■■■■■ 5.09
COL6A1-203ENST00000466285 RB1CC1Q8TDY2 1594 aa44.48■■■■■ 4.71
COL6A1-203ENST00000466285 NACADO15069 1562 aa44.15■■■■■ 4.66
COL6A1-203ENST00000466285 DNAJC5BQ9UF47 199 aa43.9■■■■■ 4.62
COL6A1-203ENST00000466285 DCAF8L2P0C7V8 631 aa43.81■■■■■ 4.6
COL6A1-203ENST00000466285 UNC13AQ9UPW8 1703 aa43.78■■■■■ 4.6
COL6A1-203ENST00000466285 PABPN1Q86U42 306 aaKnown RBP eCLIP43.52■■■■■ 4.56
COL6A1-203ENST00000466285 MYO15BQ96JP2 1530 aa43.51■■■■■ 4.56
COL6A1-203ENST00000466285 BICRAQ9NZM4 1560 aa43.38■■■■■ 4.54
COL6A1-203ENST00000466285 ZCCHC6Q5VYS8 1495 aaKnown RBP43.29■■■■■ 4.52
COL6A1-203ENST00000466285 DCAF1Q9Y4B6 1507 aa43.01■■■■■ 4.48
COL6A1-203ENST00000466285 SCRIBQ14160 1630 aa42.78■■■■■ 4.44
COL6A1-203ENST00000466285 SHROOM4Q9ULL8 1493 aa42.52■■■■■ 4.4
COL6A1-203ENST00000466285 CC2D2AQ9P2K1 1620 aa42.32■■■■■ 4.37
COL6A1-203ENST00000466285 EIF4G1Q04637 1599 aaKnown RBP42.22■■■■■ 4.35
COL6A1-203ENST00000466285 CECR2Q9BXF3 1484 aa42.1■■■■■ 4.33
COL6A1-203ENST00000466285 SMARCA4P51532 1647 aa40.75■■■■■ 4.11
COL6A1-203ENST00000466285 NCAPD3P42695 1498 aa40.75■■■■■ 4.11
COL6A1-203ENST00000466285 ATAD2BQ9ULI0 1458 aa40.7■■■■■ 4.11
COL6A1-203ENST00000466285 HMGXB3Q12766 1538 aa40.53■■■■■ 4.08
COL6A1-203ENST00000466285 SMARCA2P51531 1590 aa40.52■■■■■ 4.08
COL6A1-203ENST00000466285 BAZ1AQ9NRL2 1556 aaPredicted RBP40.44■■■■■ 4.06
COL6A1-203ENST00000466285 NESP48681 1621 aa40.31■■■■■ 4.04
COL6A1-203ENST00000466285 PEG3Q9GZU2 1588 aa40.3■■■■■ 4.04
COL6A1-203ENST00000466285 ERCC6Q03468 1493 aa40.29■■■■■ 4.04
COL6A1-203ENST00000466285 MROH2BQ7Z745 1585 aa40.28■■■■■ 4.04
COL6A1-203ENST00000466285 BAZ1BQ9UIG0 1483 aaKnown RBP40.28■■■■■ 4.04
COL6A1-203ENST00000466285 CUX2O14529 1486 aa40.2■■■■■ 4.03
COL6A1-203ENST00000466285 DNAJC5Q9H3Z4 198 aa40.08■■■■■ 4.01
COL6A1-203ENST00000466285 THOC2Q8NI27 1593 aaKnown RBP39.93■■■■□ 3.98
COL6A1-203ENST00000466285 LAMC3Q9Y6N6 1575 aa39.87■■■■□ 3.97
COL6A1-203ENST00000466285 WIZO95785 1651 aa39.85■■■■□ 3.97
COL6A1-203ENST00000466285 KIF21AQ7Z4S6 1674 aa39.85■■■■□ 3.97
COL6A1-203ENST00000466285 PDS5BQ9NTI5 1447 aa39.5■■■■□ 3.91
COL6A1-203ENST00000466285 CADPSQ9ULU8 1353 aa39.47■■■■□ 3.91
COL6A1-203ENST00000466285 RSF1Q96T23 1441 aaPredicted RBP39.36■■■■□ 3.89
COL6A1-203ENST00000466285 MRC2Q9UBG0 1479 aa39.31■■■■□ 3.88
COL6A1-203ENST00000466285 WDR62O43379 1518 aa39.28■■■■□ 3.88
COL6A1-203ENST00000466285 TOP2AP11388 1531 aaKnown RBP39.24■■■■□ 3.87
COL6A1-203ENST00000466285 CEP164Q9UPV0 1460 aa39.15■■■■□ 3.86
COL6A1-203ENST00000466285 FANCD2Q9BXW9 1451 aa39.12■■■■□ 3.85
COL6A1-203ENST00000466285 CFTRP13569 1480 aa39.11■■■■□ 3.85
COL6A1-203ENST00000466285 URB2Q14146 1524 aaKnown RBP38.9■■■■□ 3.82
COL6A1-203ENST00000466285 PRDM2Q13029 1718 aa38.9■■■■□ 3.82
COL6A1-203ENST00000466285 CCDC88BA6NC98 1476 aa38.77■■■■□ 3.8
COL6A1-203ENST00000466285 TOPBP1Q92547 1522 aa38.43■■■■□ 3.74
COL6A1-203ENST00000466285 ZNF608Q9ULD9 1512 aaPredicted RBP38.43■■■■□ 3.74
COL6A1-203ENST00000466285 TRIM41Q8WV44 630 aa38.41■■■■□ 3.74
COL6A1-203ENST00000466285 IFT140Q96RY7 1462 aa38.32■■■■□ 3.72
COL6A1-203ENST00000466285 DNMBPQ6XZF7 1577 aa38.29■■■■□ 3.72
COL6A1-203ENST00000466285 EIF4G3O43432 1585 aaKnown RBP38.25■■■■□ 3.71
COL6A1-203ENST00000466285 OSCARQ8IYS5 282 aa38.21■■■■□ 3.71
COL6A1-203ENST00000466285 TARBP1Q13395 1621 aaKnown RBP38.16■■■■□ 3.7
COL6A1-203ENST00000466285 ABCC8Q09428 1581 aa38.12■■■■□ 3.69
COL6A1-203ENST00000466285 RIMBP3CA6NJZ7 1639 aa38.05■■■■□ 3.68
COL6A1-203ENST00000466285 RIMBP3BA6NNM3 1639 aa38.05■■■■□ 3.68
COL6A1-203ENST00000466285 RIMBP3Q9UFD9 1639 aa38.05■■■■□ 3.68
COL6A1-203ENST00000466285 POLA1P09884 1462 aaPredicted RBP38.04■■■■□ 3.68
COL6A1-203ENST00000466285 CHD1O14646 1710 aa38.01■■■■□ 3.67
COL6A1-203ENST00000466285 AQRO60306 1485 aaKnown RBP eCLIP37.99■■■■□ 3.67
COL6A1-203ENST00000466285 RAD54L2Q9Y4B4 1467 aa37.93■■■■□ 3.66
COL6A1-203ENST00000466285 ARHGEF11O15085 1522 aa37.87■■■■□ 3.65
COL6A1-203ENST00000466285 CUX1P39880 1505 aa37.85■■■■□ 3.65
COL6A1-203ENST00000466285 FGD5Q6ZNL6 1462 aa37.82■■■■□ 3.64
COL6A1-203ENST00000466285 SOGA1O94964 1423 aa37.73■■■■□ 3.63
COL6A1-203ENST00000466285 TDRD9Q8NDG6 1382 aaKnown RBP37.73■■■■□ 3.63
COL6A1-203ENST00000466285 WDR97A6NE52 1622 aa37.69■■■■□ 3.62
COL6A1-203ENST00000466285 SNAPC4Q5SXM2 1469 aa37.64■■■■□ 3.62
COL6A1-203ENST00000466285 FBLN2P98095 1184 aa37.58■■■■□ 3.61
COL6A1-203ENST00000466285 ARAP1Q96P48 1450 aa37.55■■■■□ 3.6
COL6A1-203ENST00000466285 SUPT5HO00267 1087 aaKnown RBP37.53■■■■□ 3.6
COL6A1-203ENST00000466285 PBRM1Q86U86 1689 aa37.51■■■■□ 3.6
COL6A1-203ENST00000466285 CLASP1Q7Z460 1538 aa37.5■■■■□ 3.59
COL6A1-203ENST00000466285 MAGI1Q96QZ7 1491 aaPredicted RBP37.44■■■■□ 3.58
COL6A1-203ENST00000466285 GRIN2BQ13224 1484 aa37.43■■■■□ 3.58
COL6A1-203ENST00000466285 CYB5RLQ6IPT4 315 aa37.42■■■■□ 3.58
COL6A1-203ENST00000466285 ABCA5Q8WWZ7 1642 aa37.4■■■■□ 3.58
COL6A1-203ENST00000466285 SYNJ1O43426 1573 aa37.34■■■■□ 3.57
COL6A1-203ENST00000466285 SYNJ2O15056 1496 aa37.33■■■■□ 3.57
COL6A1-203ENST00000466285 GAPVD1Q14C86 1478 aa37.33■■■■□ 3.57
COL6A1-203ENST00000466285 ABCA10Q8WWZ4 1543 aa37.32■■■■□ 3.57
COL6A1-203ENST00000466285 CHMP7Q8WUX9 453 aaPredicted RBP37.25■■■■□ 3.55
COL6A1-203ENST00000466285 BIVM-ERCC5R4GMW8 1640 aa37.25■■■■□ 3.55
COL6A1-203ENST00000466285 TOP2BQ02880 1626 aa37.19■■■■□ 3.54
COL6A1-203ENST00000466285 ADAMTS12P58397 1594 aa37.12■■■■□ 3.53
COL6A1-203ENST00000466285 WRNQ14191 1432 aaPredicted RBP eCLIP37.08■■■■□ 3.53
COL6A1-203ENST00000466285 GRIN2AQ12879 1464 aa37.02■■■■□ 3.52
COL6A1-203ENST00000466285 ERCC6L2Q5T890 1561 aa37.02■■■■□ 3.52
COL6A1-203ENST00000466285 CEP170Q5SW79 1584 aa37.01■■■■□ 3.52
COL6A1-203ENST00000466285 TRHP20396 242 aaPredicted RBP36.94■■■■□ 3.5
COL6A1-203ENST00000466285 NUP160Q12769 1436 aa36.89■■■■□ 3.5
COL6A1-203ENST00000466285 ERICH3Q5RHP9 1530 aa36.84■■■■□ 3.49
COL6A1-203ENST00000466285 SHROOM2Q13796 1616 aa36.82■■■■□ 3.49
COL6A1-203ENST00000466285 FHAD1B1AJZ9 1412 aa36.82■■■■□ 3.48
COL6A1-203ENST00000466285 RUSC2Q8N2Y8 1516 aa36.62■■■■□ 3.45
COL6A1-203ENST00000466285 PRG4Q92954 1404 aaPredicted RBP36.49■■■■□ 3.43
COL6A1-203ENST00000466285 KIF13AQ9H1H9 1805 aa36.38■■■■□ 3.41
COL6A1-203ENST00000466285 CUL7Q14999 1698 aa36.36■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms