RNA–Protein interactions for RNA: ENST00000466260.1

RTFDC1-205, Transcript of Protein RTF2 homolog, humanhuman

TSL 3

Gene RTFDC1, Length 616 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-205ENST00000466260 NISCHQ9Y2I1 1504 aa23.69■■□□□ 1.38
RTFDC1-205ENST00000466260 AEBP2Q6ZN18 517 aaPredicted RBP22.15■■□□□ 1.14
RTFDC1-205ENST00000466260 CHIC1Q5VXU3 224 aa21.79■■□□□ 1.08
RTFDC1-205ENST00000466260 CCDC180Q9P1Z9 1646 aa21.15■□□□□ 0.98
RTFDC1-205ENST00000466260 ABCC9O60706 1549 aa20.78■□□□□ 0.92
RTFDC1-205ENST00000466260 DCAF8L2P0C7V8 631 aa19.92■□□□□ 0.78
RTFDC1-205ENST00000466260 RB1CC1Q8TDY2 1594 aa19.91■□□□□ 0.78
RTFDC1-205ENST00000466260 NACADO15069 1562 aa19.83■□□□□ 0.76
RTFDC1-205ENST00000466260 ZCCHC6Q5VYS8 1495 aaKnown RBP19.73■□□□□ 0.75
RTFDC1-205ENST00000466260 UNC13AQ9UPW8 1703 aa19.6■□□□□ 0.73
RTFDC1-205ENST00000466260 MYO15BQ96JP2 1530 aa19.6■□□□□ 0.73
RTFDC1-205ENST00000466260 DCAF1Q9Y4B6 1507 aa19.52■□□□□ 0.72
RTFDC1-205ENST00000466260 SCRIBQ14160 1630 aa19.38■□□□□ 0.69
RTFDC1-205ENST00000466260 PABPN1Q86U42 306 aaKnown RBP eCLIP19.37■□□□□ 0.69
RTFDC1-205ENST00000466260 BICRAQ9NZM4 1560 aa19.31■□□□□ 0.68
RTFDC1-205ENST00000466260 PHF23Q9BUL5 403 aaPredicted RBP19.18■□□□□ 0.66
RTFDC1-205ENST00000466260 DNAJC5BQ9UF47 199 aa19.02■□□□□ 0.64
RTFDC1-205ENST00000466260 SHROOM4Q9ULL8 1493 aa18.97■□□□□ 0.63
RTFDC1-205ENST00000466260 EIF4G1Q04637 1599 aaKnown RBP18.81■□□□□ 0.6
RTFDC1-205ENST00000466260 CC2D2AQ9P2K1 1620 aa18.78■□□□□ 0.6
RTFDC1-205ENST00000466260 SENP3Q9H4L4 574 aaPredicted RBP18.76■□□□□ 0.59
RTFDC1-205ENST00000466260 CECR2Q9BXF3 1484 aa18.62■□□□□ 0.57
RTFDC1-205ENST00000466260 SMARCA4P51532 1647 aa18.46■□□□□ 0.55
RTFDC1-205ENST00000466260 BAZ1AQ9NRL2 1556 aaPredicted RBP18.38■□□□□ 0.53
RTFDC1-205ENST00000466260 MROH2BQ7Z745 1585 aa18.3■□□□□ 0.52
RTFDC1-205ENST00000466260 ATAD2BQ9ULI0 1458 aa18.3■□□□□ 0.52
RTFDC1-205ENST00000466260 SMARCA2P51531 1590 aa18.3■□□□□ 0.52
RTFDC1-205ENST00000466260 NCAPD3P42695 1498 aa18.24■□□□□ 0.51
RTFDC1-205ENST00000466260 HMGXB3Q12766 1538 aa18.21■□□□□ 0.51
RTFDC1-205ENST00000466260 BAZ1BQ9UIG0 1483 aaKnown RBP18.2■□□□□ 0.5
RTFDC1-205ENST00000466260 PEG3Q9GZU2 1588 aa18.19■□□□□ 0.5
RTFDC1-205ENST00000466260 WIZO95785 1651 aa18.18■□□□□ 0.5
RTFDC1-205ENST00000466260 RSF1Q96T23 1441 aaPredicted RBP18.01■□□□□ 0.47
RTFDC1-205ENST00000466260 NESP48681 1621 aa17.96■□□□□ 0.47
RTFDC1-205ENST00000466260 TOP2AP11388 1531 aaKnown RBP17.91■□□□□ 0.46
RTFDC1-205ENST00000466260 ERCC6Q03468 1493 aa17.9■□□□□ 0.46
RTFDC1-205ENST00000466260 LAMC3Q9Y6N6 1575 aa17.86■□□□□ 0.45
RTFDC1-205ENST00000466260 KIF21AQ7Z4S6 1674 aa17.83■□□□□ 0.44
RTFDC1-205ENST00000466260 PLPPR3Q6T4P5 718 aa17.78■□□□□ 0.44
RTFDC1-205ENST00000466260 CADPSQ9ULU8 1353 aa17.73■□□□□ 0.43
RTFDC1-205ENST00000466260 THOC2Q8NI27 1593 aaKnown RBP17.7■□□□□ 0.42
RTFDC1-205ENST00000466260 PDS5BQ9NTI5 1447 aa17.69■□□□□ 0.42
RTFDC1-205ENST00000466260 PRDM2Q13029 1718 aa17.68■□□□□ 0.42
RTFDC1-205ENST00000466260 CCDC88BA6NC98 1476 aa17.67■□□□□ 0.42
RTFDC1-205ENST00000466260 CUX2O14529 1486 aa17.64■□□□□ 0.41
RTFDC1-205ENST00000466260 SUPT5HO00267 1087 aaKnown RBP17.63■□□□□ 0.41
RTFDC1-205ENST00000466260 CFTRP13569 1480 aa17.62■□□□□ 0.41
RTFDC1-205ENST00000466260 FANCD2Q9BXW9 1451 aa17.59■□□□□ 0.41
RTFDC1-205ENST00000466260 CEP164Q9UPV0 1460 aa17.59■□□□□ 0.41
RTFDC1-205ENST00000466260 MRC2Q9UBG0 1479 aa17.56■□□□□ 0.4
RTFDC1-205ENST00000466260 WDR62O43379 1518 aa17.5■□□□□ 0.39
RTFDC1-205ENST00000466260 URB2Q14146 1524 aaKnown RBP17.42■□□□□ 0.38
RTFDC1-205ENST00000466260 FOXD1Q16676 465 aa17.4■□□□□ 0.38
RTFDC1-205ENST00000466260 TOPBP1Q92547 1522 aa17.31■□□□□ 0.36
RTFDC1-205ENST00000466260 DNMBPQ6XZF7 1577 aa17.3■□□□□ 0.36
RTFDC1-205ENST00000466260 ABCC8Q09428 1581 aa17.23■□□□□ 0.35
RTFDC1-205ENST00000466260 IFT140Q96RY7 1462 aa17.18■□□□□ 0.34
RTFDC1-205ENST00000466260 CUX1P39880 1505 aa17.17■□□□□ 0.34
RTFDC1-205ENST00000466260 POLA1P09884 1462 aaPredicted RBP17.16■□□□□ 0.34
RTFDC1-205ENST00000466260 ZNF608Q9ULD9 1512 aaPredicted RBP17.16■□□□□ 0.34
RTFDC1-205ENST00000466260 EIF4G3O43432 1585 aaKnown RBP17.15■□□□□ 0.34
RTFDC1-205ENST00000466260 TARBP1Q13395 1621 aaKnown RBP17.14■□□□□ 0.33
RTFDC1-205ENST00000466260 FGD5Q6ZNL6 1462 aa17.13■□□□□ 0.33
RTFDC1-205ENST00000466260 RAD54L2Q9Y4B4 1467 aa17.12■□□□□ 0.33
RTFDC1-205ENST00000466260 DNAJC5Q9H3Z4 198 aa17.11■□□□□ 0.33
RTFDC1-205ENST00000466260 SOGA1O94964 1423 aa17.06■□□□□ 0.32
RTFDC1-205ENST00000466260 WDR97A6NE52 1622 aa17.05■□□□□ 0.32
RTFDC1-205ENST00000466260 SYNJ1O43426 1573 aa17.05■□□□□ 0.32
RTFDC1-205ENST00000466260 AQRO60306 1485 aaKnown RBP eCLIP17.05■□□□□ 0.32
RTFDC1-205ENST00000466260 BIVM-ERCC5R4GMW8 1640 aa17.04■□□□□ 0.32
RTFDC1-205ENST00000466260 WRNQ14191 1432 aaPredicted RBP eCLIP17.02■□□□□ 0.31
RTFDC1-205ENST00000466260 TOP2BQ02880 1626 aa17.01■□□□□ 0.31
RTFDC1-205ENST00000466260 CHD1O14646 1710 aa17■□□□□ 0.31
RTFDC1-205ENST00000466260 TDRD9Q8NDG6 1382 aaKnown RBP17■□□□□ 0.31
RTFDC1-205ENST00000466260 PBRM1Q86U86 1689 aa16.99■□□□□ 0.31
RTFDC1-205ENST00000466260 SNAPC4Q5SXM2 1469 aa16.92■□□□□ 0.3
RTFDC1-205ENST00000466260 ABCA5Q8WWZ7 1642 aa16.92■□□□□ 0.3
RTFDC1-205ENST00000466260 ABCA10Q8WWZ4 1543 aa16.91■□□□□ 0.3
RTFDC1-205ENST00000466260 ADRA2BP18089 450 aa16.9■□□□□ 0.3
RTFDC1-205ENST00000466260 FBLN2P98095 1184 aa16.89■□□□□ 0.29
RTFDC1-205ENST00000466260 PPP6R1Q9UPN7 881 aa16.89■□□□□ 0.29
RTFDC1-205ENST00000466260 GAPVD1Q14C86 1478 aa16.88■□□□□ 0.29
RTFDC1-205ENST00000466260 OSCARQ8IYS5 282 aa16.88■□□□□ 0.29
RTFDC1-205ENST00000466260 GRIN2BQ13224 1484 aa16.87■□□□□ 0.29
RTFDC1-205ENST00000466260 MAGI1Q96QZ7 1491 aaPredicted RBP16.82■□□□□ 0.28
RTFDC1-205ENST00000466260 CHMP7Q8WUX9 453 aaPredicted RBP16.77■□□□□ 0.28
RTFDC1-205ENST00000466260 SYNJ2O15056 1496 aa16.77■□□□□ 0.28
RTFDC1-205ENST00000466260 ADAMTS12P58397 1594 aa16.77■□□□□ 0.27
RTFDC1-205ENST00000466260 RIMBP3CA6NJZ7 1639 aa16.75■□□□□ 0.27
RTFDC1-205ENST00000466260 RIMBP3BA6NNM3 1639 aa16.75■□□□□ 0.27
RTFDC1-205ENST00000466260 RIMBP3Q9UFD9 1639 aa16.75■□□□□ 0.27
RTFDC1-205ENST00000466260 ERICH3Q5RHP9 1530 aa16.71■□□□□ 0.27
RTFDC1-205ENST00000466260 TRIM41Q8WV44 630 aa16.7■□□□□ 0.26
RTFDC1-205ENST00000466260 ARHGEF11O15085 1522 aa16.69■□□□□ 0.26
RTFDC1-205ENST00000466260 CLASP1Q7Z460 1538 aa16.68■□□□□ 0.26
RTFDC1-205ENST00000466260 GRIN2AQ12879 1464 aa16.67■□□□□ 0.26
RTFDC1-205ENST00000466260 FHAD1B1AJZ9 1412 aa16.65■□□□□ 0.26
RTFDC1-205ENST00000466260 KIF27Q86VH2 1401 aa16.65■□□□□ 0.26
RTFDC1-205ENST00000466260 CEP170Q5SW79 1584 aa16.64■□□□□ 0.25
RTFDC1-205ENST00000466260 CUL7Q14999 1698 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 154.8 ms