RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 NISCHQ9Y2I1 1504 aa33.9■■■■□ 3.02
CHD3-207ENST00000466233 CCDC180Q9P1Z9 1646 aa30.41■■■□□ 2.46
CHD3-207ENST00000466233 ABCC9O60706 1549 aa30.22■■■□□ 2.43
CHD3-207ENST00000466233 RB1CC1Q8TDY2 1594 aa28.92■■■□□ 2.22
CHD3-207ENST00000466233 NACADO15069 1562 aa28.79■■■□□ 2.2
CHD3-207ENST00000466233 MYO15BQ96JP2 1530 aa28.54■■■□□ 2.16
CHD3-207ENST00000466233 DCAF8L2P0C7V8 631 aa28.43■■■□□ 2.14
CHD3-207ENST00000466233 DNAJC5BQ9UF47 199 aa28.33■■■□□ 2.13
CHD3-207ENST00000466233 DCAF1Q9Y4B6 1507 aa28.14■■■□□ 2.1
CHD3-207ENST00000466233 PABPN1Q86U42 306 aaKnown RBP eCLIP28.13■■■□□ 2.09
CHD3-207ENST00000466233 ZCCHC6Q5VYS8 1495 aaKnown RBP28.1■■■□□ 2.09
CHD3-207ENST00000466233 UNC13AQ9UPW8 1703 aa28.09■■■□□ 2.09
CHD3-207ENST00000466233 BICRAQ9NZM4 1560 aa28.02■■■□□ 2.08
CHD3-207ENST00000466233 SHROOM4Q9ULL8 1493 aa27.89■■■□□ 2.05
CHD3-207ENST00000466233 SCRIBQ14160 1630 aa27.53■■■□□ 2
CHD3-207ENST00000466233 CC2D2AQ9P2K1 1620 aa27.34■■□□□ 1.97
CHD3-207ENST00000466233 EIF4G1Q04637 1599 aaKnown RBP27.34■■□□□ 1.97
CHD3-207ENST00000466233 CECR2Q9BXF3 1484 aa27.31■■□□□ 1.96
CHD3-207ENST00000466233 NCAPD3P42695 1498 aa26.62■■□□□ 1.85
CHD3-207ENST00000466233 ATAD2BQ9ULI0 1458 aa26.45■■□□□ 1.82
CHD3-207ENST00000466233 SMARCA2P51531 1590 aa26.42■■□□□ 1.82
CHD3-207ENST00000466233 SMARCA4P51532 1647 aa26.38■■□□□ 1.81
CHD3-207ENST00000466233 HMGXB3Q12766 1538 aa26.38■■□□□ 1.81
CHD3-207ENST00000466233 BAZ1AQ9NRL2 1556 aaPredicted RBP26.33■■□□□ 1.81
CHD3-207ENST00000466233 PEG3Q9GZU2 1588 aa26.25■■□□□ 1.79
CHD3-207ENST00000466233 CUX2O14529 1486 aa26.21■■□□□ 1.79
CHD3-207ENST00000466233 BAZ1BQ9UIG0 1483 aaKnown RBP26.17■■□□□ 1.78
CHD3-207ENST00000466233 ERCC6Q03468 1493 aa26.15■■□□□ 1.78
CHD3-207ENST00000466233 DNAJC5Q9H3Z4 198 aa26.13■■□□□ 1.77
CHD3-207ENST00000466233 MROH2BQ7Z745 1585 aa26.04■■□□□ 1.76
CHD3-207ENST00000466233 NESP48681 1621 aa25.96■■□□□ 1.75
CHD3-207ENST00000466233 LAMC3Q9Y6N6 1575 aa25.95■■□□□ 1.74
CHD3-207ENST00000466233 PDS5BQ9NTI5 1447 aa25.83■■□□□ 1.73
CHD3-207ENST00000466233 CADPSQ9ULU8 1353 aa25.77■■□□□ 1.72
CHD3-207ENST00000466233 THOC2Q8NI27 1593 aaKnown RBP25.74■■□□□ 1.71
CHD3-207ENST00000466233 WIZO95785 1651 aa25.67■■□□□ 1.7
CHD3-207ENST00000466233 KIF21AQ7Z4S6 1674 aa25.59■■□□□ 1.69
CHD3-207ENST00000466233 RSF1Q96T23 1441 aaPredicted RBP25.59■■□□□ 1.69
CHD3-207ENST00000466233 MRC2Q9UBG0 1479 aa25.53■■□□□ 1.68
CHD3-207ENST00000466233 WDR62O43379 1518 aa25.48■■□□□ 1.67
CHD3-207ENST00000466233 CFTRP13569 1480 aa25.48■■□□□ 1.67
CHD3-207ENST00000466233 TOP2AP11388 1531 aaKnown RBP25.47■■□□□ 1.67
CHD3-207ENST00000466233 CEP164Q9UPV0 1460 aa25.43■■□□□ 1.66
CHD3-207ENST00000466233 FANCD2Q9BXW9 1451 aa25.4■■□□□ 1.66
CHD3-207ENST00000466233 CCDC88BA6NC98 1476 aa25.16■■□□□ 1.62
CHD3-207ENST00000466233 URB2Q14146 1524 aaKnown RBP25.16■■□□□ 1.62
CHD3-207ENST00000466233 PRDM2Q13029 1718 aa25.09■■□□□ 1.61
CHD3-207ENST00000466233 ABCC8Q09428 1581 aa25.02■■□□□ 1.6
CHD3-207ENST00000466233 OSCARQ8IYS5 282 aa25.01■■□□□ 1.59
CHD3-207ENST00000466233 IFT140Q96RY7 1462 aa24.97■■□□□ 1.59
CHD3-207ENST00000466233 TOPBP1Q92547 1522 aa24.92■■□□□ 1.58
CHD3-207ENST00000466233 DNMBPQ6XZF7 1577 aa24.84■■□□□ 1.57
CHD3-207ENST00000466233 ZNF608Q9ULD9 1512 aaPredicted RBP24.8■■□□□ 1.56
CHD3-207ENST00000466233 TRIM41Q8WV44 630 aa24.79■■□□□ 1.56
CHD3-207ENST00000466233 TARBP1Q13395 1621 aaKnown RBP24.68■■□□□ 1.54
CHD3-207ENST00000466233 EIF4G3O43432 1585 aaKnown RBP24.67■■□□□ 1.54
CHD3-207ENST00000466233 POLA1P09884 1462 aaPredicted RBP24.66■■□□□ 1.54
CHD3-207ENST00000466233 AQRO60306 1485 aaKnown RBP eCLIP24.6■■□□□ 1.53
CHD3-207ENST00000466233 WDR97A6NE52 1622 aa24.59■■□□□ 1.53
CHD3-207ENST00000466233 SOGA1O94964 1423 aa24.59■■□□□ 1.53
CHD3-207ENST00000466233 RIMBP3CA6NJZ7 1639 aa24.53■■□□□ 1.52
CHD3-207ENST00000466233 RIMBP3BA6NNM3 1639 aa24.53■■□□□ 1.52
CHD3-207ENST00000466233 RIMBP3Q9UFD9 1639 aa24.53■■□□□ 1.52
CHD3-207ENST00000466233 ARHGEF11O15085 1522 aa24.51■■□□□ 1.51
CHD3-207ENST00000466233 RAD54L2Q9Y4B4 1467 aa24.51■■□□□ 1.51
CHD3-207ENST00000466233 FGD5Q6ZNL6 1462 aa24.49■■□□□ 1.51
CHD3-207ENST00000466233 CUX1P39880 1505 aa24.47■■□□□ 1.51
CHD3-207ENST00000466233 TDRD9Q8NDG6 1382 aaKnown RBP24.47■■□□□ 1.51
CHD3-207ENST00000466233 MAGI1Q96QZ7 1491 aaPredicted RBP24.41■■□□□ 1.5
CHD3-207ENST00000466233 CHD1O14646 1710 aa24.41■■□□□ 1.5
CHD3-207ENST00000466233 FBLN2P98095 1184 aa24.39■■□□□ 1.49
CHD3-207ENST00000466233 GRIN2BQ13224 1484 aa24.38■■□□□ 1.49
CHD3-207ENST00000466233 SNAPC4Q5SXM2 1469 aa24.36■■□□□ 1.49
CHD3-207ENST00000466233 SUPT5HO00267 1087 aaKnown RBP24.34■■□□□ 1.49
CHD3-207ENST00000466233 CHMP7Q8WUX9 453 aaPredicted RBP24.33■■□□□ 1.49
CHD3-207ENST00000466233 CYB5RLQ6IPT4 315 aa24.31■■□□□ 1.48
CHD3-207ENST00000466233 SYNJ2O15056 1496 aa24.31■■□□□ 1.48
CHD3-207ENST00000466233 ABCA10Q8WWZ4 1543 aa24.3■■□□□ 1.48
CHD3-207ENST00000466233 GAPVD1Q14C86 1478 aa24.28■■□□□ 1.48
CHD3-207ENST00000466233 CLASP1Q7Z460 1538 aa24.27■■□□□ 1.48
CHD3-207ENST00000466233 SYNJ1O43426 1573 aa24.27■■□□□ 1.48
CHD3-207ENST00000466233 ARAP1Q96P48 1450 aa24.26■■□□□ 1.47
CHD3-207ENST00000466233 WRNQ14191 1432 aaPredicted RBP eCLIP24.23■■□□□ 1.47
CHD3-207ENST00000466233 ABCA5Q8WWZ7 1642 aa24.19■■□□□ 1.46
CHD3-207ENST00000466233 PBRM1Q86U86 1689 aa24.15■■□□□ 1.46
CHD3-207ENST00000466233 TOP2BQ02880 1626 aa24.13■■□□□ 1.45
CHD3-207ENST00000466233 BIVM-ERCC5R4GMW8 1640 aa24.11■■□□□ 1.45
CHD3-207ENST00000466233 GRIN2AQ12879 1464 aa24.05■■□□□ 1.44
CHD3-207ENST00000466233 FHAD1B1AJZ9 1412 aa24.02■■□□□ 1.44
CHD3-207ENST00000466233 NUP160Q12769 1436 aa24.01■■□□□ 1.43
CHD3-207ENST00000466233 ERICH3Q5RHP9 1530 aa24.01■■□□□ 1.43
CHD3-207ENST00000466233 TRHP20396 242 aaPredicted RBP24■■□□□ 1.43
CHD3-207ENST00000466233 ADAMTS12P58397 1594 aa23.99■■□□□ 1.43
CHD3-207ENST00000466233 CEP170Q5SW79 1584 aa23.88■■□□□ 1.41
CHD3-207ENST00000466233 SHROOM2Q13796 1616 aa23.85■■□□□ 1.41
CHD3-207ENST00000466233 JPH4Q96JJ6 628 aa23.76■■□□□ 1.39
CHD3-207ENST00000466233 ERCC6L2Q5T890 1561 aa23.76■■□□□ 1.39
CHD3-207ENST00000466233 KIF27Q86VH2 1401 aa23.73■■□□□ 1.39
CHD3-207ENST00000466233 PRG4Q92954 1404 aaPredicted RBP23.71■■□□□ 1.39
CHD3-207ENST00000466233 IGF1RP08069 1367 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms