RNA–Protein interactions for RNA: ENST00000465966.4

DDR1-242, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 1 (best)

Gene DDR1, Length 268 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-242ENST00000465966 NISCHQ9Y2I1 1504 aa21.45■■□□□ 1.02
DDR1-242ENST00000465966 ABCC9O60706 1549 aa19.64■□□□□ 0.73
DDR1-242ENST00000465966 CCDC180Q9P1Z9 1646 aa19.28■□□□□ 0.68
DDR1-242ENST00000465966 DNAJC5BQ9UF47 199 aa18.66■□□□□ 0.58
DDR1-242ENST00000465966 RB1CC1Q8TDY2 1594 aa18.56■□□□□ 0.56
DDR1-242ENST00000465966 NACADO15069 1562 aa18.38■□□□□ 0.53
DDR1-242ENST00000465966 DCAF8L2P0C7V8 631 aa18.37■□□□□ 0.53
DDR1-242ENST00000465966 PABPN1Q86U42 306 aaKnown RBP eCLIP18.3■□□□□ 0.52
DDR1-242ENST00000465966 MYO15BQ96JP2 1530 aa18.04■□□□□ 0.48
DDR1-242ENST00000465966 BICRAQ9NZM4 1560 aa17.96■□□□□ 0.46
DDR1-242ENST00000465966 UNC13AQ9UPW8 1703 aa17.94■□□□□ 0.46
DDR1-242ENST00000465966 SHROOM4Q9ULL8 1493 aa17.79■□□□□ 0.44
DDR1-242ENST00000465966 CECR2Q9BXF3 1484 aa17.74■□□□□ 0.43
DDR1-242ENST00000465966 ZCCHC6Q5VYS8 1495 aaKnown RBP17.7■□□□□ 0.42
DDR1-242ENST00000465966 DCAF1Q9Y4B6 1507 aa17.7■□□□□ 0.42
DDR1-242ENST00000465966 CC2D2AQ9P2K1 1620 aa17.67■□□□□ 0.42
DDR1-242ENST00000465966 SCRIBQ14160 1630 aa17.59■□□□□ 0.41
DDR1-242ENST00000465966 EIF4G1Q04637 1599 aaKnown RBP17.58■□□□□ 0.41
DDR1-242ENST00000465966 DNAJC5Q9H3Z4 198 aa17.4■□□□□ 0.38
DDR1-242ENST00000465966 CUX2O14529 1486 aa17.05■□□□□ 0.32
DDR1-242ENST00000465966 ERCC6Q03468 1493 aa17.03■□□□□ 0.32
DDR1-242ENST00000465966 NCAPD3P42695 1498 aa16.99■□□□□ 0.31
DDR1-242ENST00000465966 ATAD2BQ9ULI0 1458 aa16.89■□□□□ 0.29
DDR1-242ENST00000465966 SMARCA2P51531 1590 aa16.83■□□□□ 0.28
DDR1-242ENST00000465966 HMGXB3Q12766 1538 aa16.8■□□□□ 0.28
DDR1-242ENST00000465966 NESP48681 1621 aa16.76■□□□□ 0.27
DDR1-242ENST00000465966 SMARCA4P51532 1647 aa16.74■□□□□ 0.27
DDR1-242ENST00000465966 BAZ1BQ9UIG0 1483 aaKnown RBP16.73■□□□□ 0.27
DDR1-242ENST00000465966 BAZ1AQ9NRL2 1556 aaPredicted RBP16.68■□□□□ 0.26
DDR1-242ENST00000465966 PDS5BQ9NTI5 1447 aa16.62■□□□□ 0.25
DDR1-242ENST00000465966 LAMC3Q9Y6N6 1575 aa16.61■□□□□ 0.25
DDR1-242ENST00000465966 THOC2Q8NI27 1593 aaKnown RBP16.59■□□□□ 0.25
DDR1-242ENST00000465966 PEG3Q9GZU2 1588 aa16.59■□□□□ 0.25
DDR1-242ENST00000465966 TRIM41Q8WV44 630 aa16.54■□□□□ 0.24
DDR1-242ENST00000465966 MROH2BQ7Z745 1585 aa16.5■□□□□ 0.23
DDR1-242ENST00000465966 CADPSQ9ULU8 1353 aa16.5■□□□□ 0.23
DDR1-242ENST00000465966 KIF21AQ7Z4S6 1674 aa16.44■□□□□ 0.22
DDR1-242ENST00000465966 MRC2Q9UBG0 1479 aa16.43■□□□□ 0.22
DDR1-242ENST00000465966 WDR62O43379 1518 aa16.36■□□□□ 0.21
DDR1-242ENST00000465966 OSCARQ8IYS5 282 aa16.33■□□□□ 0.2
DDR1-242ENST00000465966 CEP164Q9UPV0 1460 aa16.32■□□□□ 0.2
DDR1-242ENST00000465966 FANCD2Q9BXW9 1451 aa16.28■□□□□ 0.2
DDR1-242ENST00000465966 WIZO95785 1651 aa16.24■□□□□ 0.19
DDR1-242ENST00000465966 CFTRP13569 1480 aa16.22■□□□□ 0.19
DDR1-242ENST00000465966 URB2Q14146 1524 aaKnown RBP16.12■□□□□ 0.17
DDR1-242ENST00000465966 RSF1Q96T23 1441 aaPredicted RBP16.11■□□□□ 0.17
DDR1-242ENST00000465966 TOP2AP11388 1531 aaKnown RBP16.07■□□□□ 0.16
DDR1-242ENST00000465966 IFT140Q96RY7 1462 aa16.02■□□□□ 0.15
DDR1-242ENST00000465966 ZNF608Q9ULD9 1512 aaPredicted RBP15.97■□□□□ 0.15
DDR1-242ENST00000465966 RIMBP3CA6NJZ7 1639 aa15.97■□□□□ 0.15
DDR1-242ENST00000465966 RIMBP3BA6NNM3 1639 aa15.97■□□□□ 0.15
DDR1-242ENST00000465966 RIMBP3Q9UFD9 1639 aa15.97■□□□□ 0.15
DDR1-242ENST00000465966 ARHGEF11O15085 1522 aa15.94■□□□□ 0.14
DDR1-242ENST00000465966 CYB5RLQ6IPT4 315 aa15.94■□□□□ 0.14
DDR1-242ENST00000465966 ABCC8Q09428 1581 aa15.92■□□□□ 0.14
DDR1-242ENST00000465966 CCDC88BA6NC98 1476 aa15.92■□□□□ 0.14
DDR1-242ENST00000465966 TOPBP1Q92547 1522 aa15.91■□□□□ 0.14
DDR1-242ENST00000465966 TRHP20396 242 aaPredicted RBP15.88■□□□□ 0.13
DDR1-242ENST00000465966 FBLN2P98095 1184 aa15.87■□□□□ 0.13
DDR1-242ENST00000465966 PRDM2Q13029 1718 aa15.84■□□□□ 0.13
DDR1-242ENST00000465966 AQRO60306 1485 aaKnown RBP eCLIP15.83■□□□□ 0.122e-6■■■□□ 15.2
DDR1-242ENST00000465966 EIF4G3O43432 1585 aaKnown RBP15.82■□□□□ 0.12
DDR1-242ENST00000465966 DNMBPQ6XZF7 1577 aa15.81■□□□□ 0.12
DDR1-242ENST00000465966 ARAP1Q96P48 1450 aa15.76■□□□□ 0.11
DDR1-242ENST00000465966 POLA1P09884 1462 aaPredicted RBP15.73■□□□□ 0.11
DDR1-242ENST00000465966 TARBP1Q13395 1621 aaKnown RBP15.73■□□□□ 0.11
DDR1-242ENST00000465966 SOGA1O94964 1423 aa15.72■□□□□ 0.11
DDR1-242ENST00000465966 TDRD9Q8NDG6 1382 aaKnown RBP15.72■□□□□ 0.11
DDR1-242ENST00000465966 CHMP7Q8WUX9 453 aaPredicted RBP15.71■□□□□ 0.11
DDR1-242ENST00000465966 CHD1O14646 1710 aa15.69■□□□□ 0.1
DDR1-242ENST00000465966 RAD54L2Q9Y4B4 1467 aa15.69■□□□□ 0.1
DDR1-242ENST00000465966 AEBP2Q6ZN18 517 aaPredicted RBP15.65■□□□□ 0.1
DDR1-242ENST00000465966 SNAPC4Q5SXM2 1469 aa15.65■□□□□ 0.1
DDR1-242ENST00000465966 MAGI1Q96QZ7 1491 aaPredicted RBP15.61■□□□□ 0.09
DDR1-242ENST00000465966 FGD5Q6ZNL6 1462 aa15.6■□□□□ 0.09
DDR1-242ENST00000465966 SYNJ1O43426 1573 aa15.6■□□□□ 0.09
DDR1-242ENST00000465966 WDR97A6NE52 1622 aa15.6■□□□□ 0.09
DDR1-242ENST00000465966 GRIN2BQ13224 1484 aa15.59■□□□□ 0.09
DDR1-242ENST00000465966 CLASP1Q7Z460 1538 aa15.58■□□□□ 0.09
DDR1-242ENST00000465966 SYNJ2O15056 1496 aa15.57■□□□□ 0.08
DDR1-242ENST00000465966 CUX1P39880 1505 aa15.52■□□□□ 0.07
DDR1-242ENST00000465966 GAPVD1Q14C86 1478 aa15.51■□□□□ 0.07
DDR1-242ENST00000465966 ABCA10Q8WWZ4 1543 aa15.42■□□□□ 0.06
DDR1-242ENST00000465966 GRIN2AQ12879 1464 aa15.37■□□□□ 0.05
DDR1-242ENST00000465966 PBRM1Q86U86 1689 aa15.37■□□□□ 0.05
DDR1-242ENST00000465966 WRNQ14191 1432 aaPredicted RBP eCLIP15.36■□□□□ 0.05
DDR1-242ENST00000465966 ABCA5Q8WWZ7 1642 aa15.35■□□□□ 0.05
DDR1-242ENST00000465966 NUP160Q12769 1436 aa15.33■□□□□ 0.04
DDR1-242ENST00000465966 FHAD1B1AJZ9 1412 aa15.31■□□□□ 0.04
DDR1-242ENST00000465966 CEP170Q5SW79 1584 aa15.3■□□□□ 0.04
DDR1-242ENST00000465966 ERCC6L2Q5T890 1561 aa15.3■□□□□ 0.04
DDR1-242ENST00000465966 SUPT5HO00267 1087 aaKnown RBP15.28■□□□□ 0.04
DDR1-242ENST00000465966 ADAMTS12P58397 1594 aa15.27■□□□□ 0.03
DDR1-242ENST00000465966 NPM1P06748 294 aaKnown RBP eCLIP15.25■□□□□ 0.03
DDR1-242ENST00000465966 JPH4Q96JJ6 628 aa15.25■□□□□ 0.03
DDR1-242ENST00000465966 PRG4Q92954 1404 aaPredicted RBP15.24■□□□□ 0.03
DDR1-242ENST00000465966 ERICH3Q5RHP9 1530 aa15.22■□□□□ 0.03
DDR1-242ENST00000465966 FAM69CQ0P6D2 419 aa15.21■□□□□ 0.03
DDR1-242ENST00000465966 SHROOM2Q13796 1616 aa15.21■□□□□ 0.02
DDR1-242ENST00000465966 TOP2BQ02880 1626 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 122.9 ms