RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 NISCHQ9Y2I1 1504 aa53.88■■■■■ 6.22
LIME1-203ENST00000465591 CCDC180Q9P1Z9 1646 aa48.09■■■■■ 5.29
LIME1-203ENST00000465591 ABCC9O60706 1549 aa47.55■■■■■ 5.2
LIME1-203ENST00000465591 RB1CC1Q8TDY2 1594 aa45.45■■■■■ 4.87
LIME1-203ENST00000465591 NACADO15069 1562 aa45.29■■■■■ 4.84
LIME1-203ENST00000465591 DCAF8L2P0C7V8 631 aa45.17■■■■■ 4.82
LIME1-203ENST00000465591 MYO15BQ96JP2 1530 aa44.85■■■■■ 4.77
LIME1-203ENST00000465591 ZCCHC6Q5VYS8 1495 aaKnown RBP44.79■■■■■ 4.76
LIME1-203ENST00000465591 UNC13AQ9UPW8 1703 aa44.58■■■■■ 4.73
LIME1-203ENST00000465591 DCAF1Q9Y4B6 1507 aa44.51■■■■■ 4.72
LIME1-203ENST00000465591 PABPN1Q86U42 306 aaKnown RBP eCLIP44.36■■■■■ 4.69
LIME1-203ENST00000465591 BICRAQ9NZM4 1560 aa44.22■■■■■ 4.67
LIME1-203ENST00000465591 DNAJC5BQ9UF47 199 aa44.13■■■■■ 4.66
LIME1-203ENST00000465591 SCRIBQ14160 1630 aa43.9■■■■■ 4.62
LIME1-203ENST00000465591 SHROOM4Q9ULL8 1493 aa43.53■■■■■ 4.56
LIME1-203ENST00000465591 EIF4G1Q04637 1599 aaKnown RBP43.03■■■■■ 4.48
LIME1-203ENST00000465591 CC2D2AQ9P2K1 1620 aa42.99■■■■■ 4.47
LIME1-203ENST00000465591 CECR2Q9BXF3 1484 aa42.74■■■■■ 4.43
LIME1-203ENST00000465591 SMARCA4P51532 1647 aa41.93■■■■■ 4.3
LIME1-203ENST00000465591 NCAPD3P42695 1498 aa41.82■■■■■ 4.29
LIME1-203ENST00000465591 ATAD2BQ9ULI0 1458 aa41.8■■■■■ 4.28
LIME1-203ENST00000465591 BAZ1AQ9NRL2 1556 aaPredicted RBP41.76■■■■■ 4.27
LIME1-203ENST00000465591 SMARCA2P51531 1590 aa41.67■■■■■ 4.26
LIME1-203ENST00000465591 HMGXB3Q12766 1538 aa41.57■■■■■ 4.25
LIME1-203ENST00000465591 MROH2BQ7Z745 1585 aa41.57■■■■■ 4.25
LIME1-203ENST00000465591 PEG3Q9GZU2 1588 aa41.5■■■■■ 4.23
LIME1-203ENST00000465591 BAZ1BQ9UIG0 1483 aaKnown RBP41.4■■■■■ 4.22
LIME1-203ENST00000465591 WIZO95785 1651 aa41.12■■■■■ 4.17
LIME1-203ENST00000465591 NESP48681 1621 aa41.05■■■■■ 4.16
LIME1-203ENST00000465591 ERCC6Q03468 1493 aa40.94■■■■■ 4.14
LIME1-203ENST00000465591 RSF1Q96T23 1441 aaPredicted RBP40.9■■■■■ 4.14
LIME1-203ENST00000465591 LAMC3Q9Y6N6 1575 aa40.78■■■■■ 4.12
LIME1-203ENST00000465591 CUX2O14529 1486 aa40.67■■■■■ 4.1
LIME1-203ENST00000465591 TOP2AP11388 1531 aaKnown RBP40.58■■■■■ 4.09
LIME1-203ENST00000465591 CADPSQ9ULU8 1353 aa40.57■■■■■ 4.08
LIME1-203ENST00000465591 KIF21AQ7Z4S6 1674 aa40.55■■■■■ 4.08
LIME1-203ENST00000465591 THOC2Q8NI27 1593 aaKnown RBP40.51■■■■■ 4.08
LIME1-203ENST00000465591 PDS5BQ9NTI5 1447 aa40.48■■■■■ 4.07
LIME1-203ENST00000465591 CFTRP13569 1480 aa40.25■■■■■ 4.03
LIME1-203ENST00000465591 MRC2Q9UBG0 1479 aa40.14■■■■■ 4.02
LIME1-203ENST00000465591 CCDC88BA6NC98 1476 aa40.13■■■■■ 4.02
LIME1-203ENST00000465591 FANCD2Q9BXW9 1451 aa40.13■■■■■ 4.01
LIME1-203ENST00000465591 CEP164Q9UPV0 1460 aa40.09■■■■■ 4.01
LIME1-203ENST00000465591 WDR62O43379 1518 aa40.05■■■■■ 4
LIME1-203ENST00000465591 DNAJC5Q9H3Z4 198 aa40■■■■□ 3.99
LIME1-203ENST00000465591 PRDM2Q13029 1718 aa39.94■■■■□ 3.98
LIME1-203ENST00000465591 URB2Q14146 1524 aaKnown RBP39.81■■■■□ 3.96
LIME1-203ENST00000465591 SUPT5HO00267 1087 aaKnown RBP39.5■■■■□ 3.91
LIME1-203ENST00000465591 TOPBP1Q92547 1522 aa39.45■■■■□ 3.91
LIME1-203ENST00000465591 DNMBPQ6XZF7 1577 aa39.35■■■■□ 3.89
LIME1-203ENST00000465591 ABCC8Q09428 1581 aa39.31■■■■□ 3.88
LIME1-203ENST00000465591 IFT140Q96RY7 1462 aa39.26■■■■□ 3.88
LIME1-203ENST00000465591 ZNF608Q9ULD9 1512 aaPredicted RBP39.23■■■■□ 3.87
LIME1-203ENST00000465591 TARBP1Q13395 1621 aaKnown RBP39.09■■■■□ 3.85
LIME1-203ENST00000465591 POLA1P09884 1462 aaPredicted RBP39.09■■■■□ 3.85
LIME1-203ENST00000465591 CUX1P39880 1505 aa39.02■■■■□ 3.84
LIME1-203ENST00000465591 EIF4G3O43432 1585 aaKnown RBP39.02■■■■□ 3.84
LIME1-203ENST00000465591 RAD54L2Q9Y4B4 1467 aa38.96■■■■□ 3.83
LIME1-203ENST00000465591 FGD5Q6ZNL6 1462 aa38.93■■■■□ 3.82
LIME1-203ENST00000465591 AQRO60306 1485 aaKnown RBP eCLIP38.92■■■■□ 3.826e-6■■■■□ 25.1
LIME1-203ENST00000465591 OSCARQ8IYS5 282 aa38.89■■■■□ 3.82
LIME1-203ENST00000465591 SOGA1O94964 1423 aa38.89■■■■□ 3.82
LIME1-203ENST00000465591 TDRD9Q8NDG6 1382 aaKnown RBP38.76■■■■□ 3.8
LIME1-203ENST00000465591 WDR97A6NE52 1622 aa38.67■■■■□ 3.78
LIME1-203ENST00000465591 CHD1O14646 1710 aa38.65■■■■□ 3.78
LIME1-203ENST00000465591 SYNJ1O43426 1573 aa38.54■■■■□ 3.76
LIME1-203ENST00000465591 BIVM-ERCC5R4GMW8 1640 aa38.54■■■■□ 3.76
LIME1-203ENST00000465591 SNAPC4Q5SXM2 1469 aa38.54■■■■□ 3.76
LIME1-203ENST00000465591 WRNQ14191 1432 aaPredicted RBP eCLIP38.53■■■■□ 3.76
LIME1-203ENST00000465591 TOP2BQ02880 1626 aa38.52■■■■□ 3.76
LIME1-203ENST00000465591 ABCA10Q8WWZ4 1543 aa38.5■■■■□ 3.75
LIME1-203ENST00000465591 TRIM41Q8WV44 630 aa38.49■■■■□ 3.75
LIME1-203ENST00000465591 FBLN2P98095 1184 aa38.48■■■■□ 3.75
LIME1-203ENST00000465591 GRIN2BQ13224 1484 aa38.47■■■■□ 3.75
LIME1-203ENST00000465591 PBRM1Q86U86 1689 aa38.43■■■■□ 3.74
LIME1-203ENST00000465591 GAPVD1Q14C86 1478 aa38.43■■■■□ 3.74
LIME1-203ENST00000465591 ABCA5Q8WWZ7 1642 aa38.43■■■■□ 3.74
LIME1-203ENST00000465591 RIMBP3CA6NJZ7 1639 aa38.41■■■■□ 3.74
LIME1-203ENST00000465591 RIMBP3BA6NNM3 1639 aa38.41■■■■□ 3.74
LIME1-203ENST00000465591 RIMBP3Q9UFD9 1639 aa38.41■■■■□ 3.74
LIME1-203ENST00000465591 MAGI1Q96QZ7 1491 aaPredicted RBP38.41■■■■□ 3.74
LIME1-203ENST00000465591 ARHGEF11O15085 1522 aa38.33■■■■□ 3.73
LIME1-203ENST00000465591 SYNJ2O15056 1496 aa38.28■■■■□ 3.72
LIME1-203ENST00000465591 CHMP7Q8WUX9 453 aaPredicted RBP38.27■■■■□ 3.72
LIME1-203ENST00000465591 CLASP1Q7Z460 1538 aa38.19■■■■□ 3.7
LIME1-203ENST00000465591 ADAMTS12P58397 1594 aa38.09■■■■□ 3.69
LIME1-203ENST00000465591 ARAP1Q96P48 1450 aa38.03■■■■□ 3.68
LIME1-203ENST00000465591 GRIN2AQ12879 1464 aa38.01■■■■□ 3.67
LIME1-203ENST00000465591 ERICH3Q5RHP9 1530 aa38.01■■■■□ 3.67
LIME1-203ENST00000465591 CYB5RLQ6IPT4 315 aa37.98■■■■□ 3.67
LIME1-203ENST00000465591 FHAD1B1AJZ9 1412 aa37.95■■■■□ 3.67
LIME1-203ENST00000465591 CEP170Q5SW79 1584 aa37.89■■■■□ 3.66
LIME1-203ENST00000465591 NUP160Q12769 1436 aa37.87■■■■□ 3.65
LIME1-203ENST00000465591 KIF27Q86VH2 1401 aa37.73■■■■□ 3.63
LIME1-203ENST00000465591 ERCC6L2Q5T890 1561 aa37.7■■■■□ 3.63
LIME1-203ENST00000465591 IGF1RP08069 1367 aa37.68■■■■□ 3.62
LIME1-203ENST00000465591 SHROOM2Q13796 1616 aa37.65■■■■□ 3.62
LIME1-203ENST00000465591 CUL7Q14999 1698 aa37.58■■■■□ 3.61
LIME1-203ENST00000465591 RUSC2Q8N2Y8 1516 aa37.54■■■■□ 3.6
LIME1-203ENST00000465591 JPH4Q96JJ6 628 aa37.44■■■■□ 3.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms