RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 NISCHQ9Y2I1 1504 aa49.36■■■■■ 5.49
SKA3-205ENST00000465471 CCDC180Q9P1Z9 1646 aa43.86■■■■■ 4.61
SKA3-205ENST00000465471 ABCC9O60706 1549 aa42.6■■■■■ 4.41
SKA3-205ENST00000465471 ZCCHC6Q5VYS8 1495 aaKnown RBP41.19■■■■■ 4.18
SKA3-205ENST00000465471 NACADO15069 1562 aa41.15■■■■■ 4.18
SKA3-205ENST00000465471 RB1CC1Q8TDY2 1594 aa41.12■■■■■ 4.17
SKA3-205ENST00000465471 MYO15BQ96JP2 1530 aa41.03■■■■■ 4.16
SKA3-205ENST00000465471 DCAF1Q9Y4B6 1507 aa40.92■■■■■ 4.14
SKA3-205ENST00000465471 DCAF8L2P0C7V8 631 aa40.89■■■■■ 4.14
SKA3-205ENST00000465471 UNC13AQ9UPW8 1703 aa40.26■■■■■ 4.04
SKA3-205ENST00000465471 SCRIBQ14160 1630 aa39.94■■■■□ 3.98
SKA3-205ENST00000465471 BICRAQ9NZM4 1560 aa39.93■■■■□ 3.98
SKA3-205ENST00000465471 PABPN1Q86U42 306 aaKnown RBP eCLIP39.77■■■■□ 3.96
SKA3-205ENST00000465471 SHROOM4Q9ULL8 1493 aa39.56■■■■□ 3.92
SKA3-205ENST00000465471 DNAJC5BQ9UF47 199 aa38.92■■■■□ 3.82
SKA3-205ENST00000465471 EIF4G1Q04637 1599 aaKnown RBP38.82■■■■□ 3.81
SKA3-205ENST00000465471 CC2D2AQ9P2K1 1620 aa38.6■■■■□ 3.77
SKA3-205ENST00000465471 CECR2Q9BXF3 1484 aa38.41■■■■□ 3.74
SKA3-205ENST00000465471 SMARCA4P51532 1647 aa38.27■■■■□ 3.72
SKA3-205ENST00000465471 BAZ1AQ9NRL2 1556 aaPredicted RBP38.24■■■■□ 3.71
SKA3-205ENST00000465471 MROH2BQ7Z745 1585 aa38.03■■■■□ 3.68
SKA3-205ENST00000465471 ATAD2BQ9ULI0 1458 aa37.99■■■■□ 3.67
SKA3-205ENST00000465471 SMARCA2P51531 1590 aa37.96■■■■□ 3.67
SKA3-205ENST00000465471 PEG3Q9GZU2 1588 aa37.96■■■■□ 3.67
SKA3-205ENST00000465471 NCAPD3P42695 1498 aa37.96■■■■□ 3.67
SKA3-205ENST00000465471 HMGXB3Q12766 1538 aa37.82■■■■□ 3.65
SKA3-205ENST00000465471 BAZ1BQ9UIG0 1483 aaKnown RBP37.66■■■■□ 3.62
SKA3-205ENST00000465471 RSF1Q96T23 1441 aaPredicted RBP37.65■■■■□ 3.62
SKA3-205ENST00000465471 WIZO95785 1651 aa37.63■■■■□ 3.61
SKA3-205ENST00000465471 TOP2AP11388 1531 aaKnown RBP37.26■■■■□ 3.56
SKA3-205ENST00000465471 NESP48681 1621 aa36.95■■■■□ 3.51
SKA3-205ENST00000465471 LAMC3Q9Y6N6 1575 aa36.93■■■■□ 3.5
SKA3-205ENST00000465471 CADPSQ9ULU8 1353 aa36.81■■■■□ 3.48
SKA3-205ENST00000465471 CCDC88BA6NC98 1476 aa36.78■■■■□ 3.48
SKA3-205ENST00000465471 CFTRP13569 1480 aa36.69■■■■□ 3.46
SKA3-205ENST00000465471 ERCC6Q03468 1493 aa36.67■■■■□ 3.46
SKA3-205ENST00000465471 SUPT5HO00267 1087 aaKnown RBP36.65■■■■□ 3.46
SKA3-205ENST00000465471 PDS5BQ9NTI5 1447 aa36.61■■■■□ 3.45
SKA3-205ENST00000465471 KIF21AQ7Z4S6 1674 aa36.57■■■■□ 3.44
SKA3-205ENST00000465471 PRDM2Q13029 1718 aa36.48■■■■□ 3.43
SKA3-205ENST00000465471 THOC2Q8NI27 1593 aaKnown RBP36.44■■■■□ 3.42
SKA3-205ENST00000465471 FANCD2Q9BXW9 1451 aa36.4■■■■□ 3.42
SKA3-205ENST00000465471 CEP164Q9UPV0 1460 aa36.33■■■■□ 3.41
SKA3-205ENST00000465471 CUX2O14529 1486 aa36.31■■■■□ 3.4
SKA3-205ENST00000465471 MRC2Q9UBG0 1479 aa36.26■■■■□ 3.4
SKA3-205ENST00000465471 WDR62O43379 1518 aa36.18■■■■□ 3.38
SKA3-205ENST00000465471 URB2Q14146 1524 aaKnown RBP36.06■■■■□ 3.36
SKA3-205ENST00000465471 TOPBP1Q92547 1522 aa35.86■■■■□ 3.33
SKA3-205ENST00000465471 ABCC8Q09428 1581 aa35.85■■■■□ 3.33
SKA3-205ENST00000465471 DNMBPQ6XZF7 1577 aa35.85■■■■□ 3.33
SKA3-205ENST00000465471 CUX1P39880 1505 aa35.67■■■■□ 3.3
SKA3-205ENST00000465471 IFT140Q96RY7 1462 aa35.58■■■■□ 3.29
SKA3-205ENST00000465471 POLA1P09884 1462 aaPredicted RBP35.57■■■■□ 3.28
SKA3-205ENST00000465471 TARBP1Q13395 1621 aaKnown RBP35.5■■■■□ 3.27
SKA3-205ENST00000465471 FGD5Q6ZNL6 1462 aa35.5■■■■□ 3.27
SKA3-205ENST00000465471 WRNQ14191 1432 aaPredicted RBP eCLIP35.47■■■■□ 3.27
SKA3-205ENST00000465471 BIVM-ERCC5R4GMW8 1640 aa35.45■■■■□ 3.27
SKA3-205ENST00000465471 TOP2BQ02880 1626 aa35.43■■■■□ 3.26
SKA3-205ENST00000465471 SYNJ1O43426 1573 aa35.42■■■■□ 3.26
SKA3-205ENST00000465471 ZNF608Q9ULD9 1512 aaPredicted RBP35.4■■■■□ 3.26
SKA3-205ENST00000465471 RAD54L2Q9Y4B4 1467 aa35.37■■■■□ 3.25
SKA3-205ENST00000465471 SOGA1O94964 1423 aa35.36■■■■□ 3.25
SKA3-205ENST00000465471 EIF4G3O43432 1585 aaKnown RBP35.31■■■■□ 3.24
SKA3-205ENST00000465471 WDR97A6NE52 1622 aa35.29■■■■□ 3.24
SKA3-205ENST00000465471 ABCA10Q8WWZ4 1543 aa35.2■■■■□ 3.23
SKA3-205ENST00000465471 AQRO60306 1485 aaKnown RBP eCLIP35.18■■■■□ 3.223e-7■■■■■ 51.3
SKA3-205ENST00000465471 TDRD9Q8NDG6 1382 aaKnown RBP35.13■■■■□ 3.21
SKA3-205ENST00000465471 ABCA5Q8WWZ7 1642 aa35.07■■■■□ 3.21
SKA3-205ENST00000465471 GAPVD1Q14C86 1478 aa34.99■■■■□ 3.19
SKA3-205ENST00000465471 GRIN2BQ13224 1484 aa34.97■■■■□ 3.19
SKA3-205ENST00000465471 PBRM1Q86U86 1689 aa34.96■■■■□ 3.19
SKA3-205ENST00000465471 DNAJC5Q9H3Z4 198 aa34.9■■■■□ 3.18
SKA3-205ENST00000465471 SNAPC4Q5SXM2 1469 aa34.9■■■■□ 3.18
SKA3-205ENST00000465471 MAGI1Q96QZ7 1491 aaPredicted RBP34.89■■■■□ 3.18
SKA3-205ENST00000465471 CHD1O14646 1710 aa34.82■■■■□ 3.16
SKA3-205ENST00000465471 ERICH3Q5RHP9 1530 aa34.78■■■■□ 3.16
SKA3-205ENST00000465471 SYNJ2O15056 1496 aa34.74■■■■□ 3.15
SKA3-205ENST00000465471 OSCARQ8IYS5 282 aa34.72■■■■□ 3.15
SKA3-205ENST00000465471 ADAMTS12P58397 1594 aa34.7■■■■□ 3.15
SKA3-205ENST00000465471 KIF27Q86VH2 1401 aa34.7■■■■□ 3.15
SKA3-205ENST00000465471 TRIM41Q8WV44 630 aa34.64■■■■□ 3.14
SKA3-205ENST00000465471 FHAD1B1AJZ9 1412 aa34.6■■■■□ 3.13
SKA3-205ENST00000465471 FBLN2P98095 1184 aa34.59■■■■□ 3.13
SKA3-205ENST00000465471 CHMP7Q8WUX9 453 aaPredicted RBP34.58■■■■□ 3.13
SKA3-205ENST00000465471 IGF1RP08069 1367 aa34.55■■■■□ 3.12
SKA3-205ENST00000465471 GRIN2AQ12879 1464 aa34.54■■■■□ 3.12
SKA3-205ENST00000465471 CUL7Q14999 1698 aa34.5■■■■□ 3.11
SKA3-205ENST00000465471 CLASP1Q7Z460 1538 aa34.48■■■■□ 3.11
SKA3-205ENST00000465471 RUSC2Q8N2Y8 1516 aa34.45■■■■□ 3.11
SKA3-205ENST00000465471 NUP160Q12769 1436 aa34.4■■■■□ 3.1
SKA3-205ENST00000465471 CHIC1Q5VXU3 224 aa34.4■■■■□ 3.1
SKA3-205ENST00000465471 CEP170Q5SW79 1584 aa34.38■■■■□ 3.09
SKA3-205ENST00000465471 CARMIL1Q5VZK9 1371 aa34.32■■■■□ 3.08
SKA3-205ENST00000465471 ARHGEF11O15085 1522 aa34.26■■■■□ 3.08
SKA3-205ENST00000465471 RIMBP3CA6NJZ7 1639 aa34.26■■■■□ 3.07
SKA3-205ENST00000465471 RIMBP3BA6NNM3 1639 aa34.26■■■■□ 3.07
SKA3-205ENST00000465471 RIMBP3Q9UFD9 1639 aa34.26■■■■□ 3.07
SKA3-205ENST00000465471 EEA1Q15075 1411 aa34.19■■■■□ 3.06
SKA3-205ENST00000465471 SHROOM2Q13796 1616 aa34.16■■■■□ 3.06
SKA3-205ENST00000465471 RAPGEF2Q9Y4G8 1499 aa34.16■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms