RNA–Protein interactions for RNA: ENST00000465441.1

CSPG5-204, Transcript of chondroitin sulfate proteoglycan 5, humanhuman

TSL 4

Gene CSPG5, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG5-204ENST00000465441 NISCHQ9Y2I1 1504 aa51.96■■■■■ 5.91
CSPG5-204ENST00000465441 ABCC9O60706 1549 aa46.45■■■■■ 5.03
CSPG5-204ENST00000465441 CCDC180Q9P1Z9 1646 aa46.43■■■■■ 5.02
CSPG5-204ENST00000465441 RB1CC1Q8TDY2 1594 aa44.2■■■■■ 4.67
CSPG5-204ENST00000465441 DCAF8L2P0C7V8 631 aa43.98■■■■■ 4.63
CSPG5-204ENST00000465441 NACADO15069 1562 aa43.95■■■■■ 4.63
CSPG5-204ENST00000465441 DNAJC5BQ9UF47 199 aa43.57■■■■■ 4.57
CSPG5-204ENST00000465441 MYO15BQ96JP2 1530 aa43.38■■■■■ 4.54
CSPG5-204ENST00000465441 PABPN1Q86U42 306 aaKnown RBP eCLIP43.38■■■■■ 4.53
CSPG5-204ENST00000465441 UNC13AQ9UPW8 1703 aa43.17■■■■■ 4.5
CSPG5-204ENST00000465441 ZCCHC6Q5VYS8 1495 aaKnown RBP43.05■■■■■ 4.48
CSPG5-204ENST00000465441 BICRAQ9NZM4 1560 aa42.94■■■■■ 4.46
CSPG5-204ENST00000465441 DCAF1Q9Y4B6 1507 aa42.88■■■■■ 4.46
CSPG5-204ENST00000465441 SCRIBQ14160 1630 aa42.39■■■■■ 4.38
CSPG5-204ENST00000465441 SHROOM4Q9ULL8 1493 aa42.29■■■■■ 4.36
CSPG5-204ENST00000465441 CC2D2AQ9P2K1 1620 aa41.92■■■■■ 4.3
CSPG5-204ENST00000465441 EIF4G1Q04637 1599 aaKnown RBP41.86■■■■■ 4.29
CSPG5-204ENST00000465441 CECR2Q9BXF3 1484 aa41.81■■■■■ 4.28
CSPG5-204ENST00000465441 NCAPD3P42695 1498 aa40.64■■■■■ 4.1
CSPG5-204ENST00000465441 ATAD2BQ9ULI0 1458 aa40.52■■■■■ 4.08
CSPG5-204ENST00000465441 SMARCA4P51532 1647 aa40.45■■■■■ 4.07
CSPG5-204ENST00000465441 SMARCA2P51531 1590 aa40.35■■■■■ 4.05
CSPG5-204ENST00000465441 BAZ1AQ9NRL2 1556 aaPredicted RBP40.28■■■■■ 4.04
CSPG5-204ENST00000465441 HMGXB3Q12766 1538 aa40.25■■■■■ 4.03
CSPG5-204ENST00000465441 BAZ1BQ9UIG0 1483 aaKnown RBP40.1■■■■■ 4.01
CSPG5-204ENST00000465441 ERCC6Q03468 1493 aa40.06■■■■■ 4
CSPG5-204ENST00000465441 MROH2BQ7Z745 1585 aa40.06■■■■■ 4
CSPG5-204ENST00000465441 PEG3Q9GZU2 1588 aa40.05■■■■■ 4
CSPG5-204ENST00000465441 NESP48681 1621 aa39.95■■■■□ 3.99
CSPG5-204ENST00000465441 CUX2O14529 1486 aa39.91■■■■□ 3.98
CSPG5-204ENST00000465441 DNAJC5Q9H3Z4 198 aa39.87■■■■□ 3.97
CSPG5-204ENST00000465441 LAMC3Q9Y6N6 1575 aa39.62■■■■□ 3.93
CSPG5-204ENST00000465441 WIZO95785 1651 aa39.56■■■■□ 3.92
CSPG5-204ENST00000465441 PDS5BQ9NTI5 1447 aa39.46■■■■□ 3.91
CSPG5-204ENST00000465441 CADPSQ9ULU8 1353 aa39.44■■■■□ 3.9
CSPG5-204ENST00000465441 THOC2Q8NI27 1593 aaKnown RBP39.41■■■■□ 3.9
CSPG5-204ENST00000465441 KIF21AQ7Z4S6 1674 aa39.34■■■■□ 3.89
CSPG5-204ENST00000465441 RSF1Q96T23 1441 aaPredicted RBP39.31■■■■□ 3.88
CSPG5-204ENST00000465441 MRC2Q9UBG0 1479 aa39.06■■■■□ 3.84
CSPG5-204ENST00000465441 TOP2AP11388 1531 aaKnown RBP39.03■■■■□ 3.84
CSPG5-204ENST00000465441 CFTRP13569 1480 aa38.98■■■■□ 3.83
CSPG5-204ENST00000465441 WDR62O43379 1518 aa38.94■■■■□ 3.82
CSPG5-204ENST00000465441 FANCD2Q9BXW9 1451 aa38.93■■■■□ 3.82
CSPG5-204ENST00000465441 CEP164Q9UPV0 1460 aa38.93■■■■□ 3.82
CSPG5-204ENST00000465441 CCDC88BA6NC98 1476 aa38.68■■■■□ 3.78
CSPG5-204ENST00000465441 URB2Q14146 1524 aaKnown RBP38.6■■■■□ 3.77
CSPG5-204ENST00000465441 PRDM2Q13029 1718 aa38.44■■■■□ 3.74
CSPG5-204ENST00000465441 OSCARQ8IYS5 282 aa38.27■■■■□ 3.72
CSPG5-204ENST00000465441 TOPBP1Q92547 1522 aa38.21■■■■□ 3.71
CSPG5-204ENST00000465441 TRIM41Q8WV44 630 aa38.19■■■■□ 3.7
CSPG5-204ENST00000465441 IFT140Q96RY7 1462 aa38.17■■■■□ 3.7
CSPG5-204ENST00000465441 ABCC8Q09428 1581 aa38.14■■■■□ 3.7
CSPG5-204ENST00000465441 ZNF608Q9ULD9 1512 aaPredicted RBP38.12■■■■□ 3.69
CSPG5-204ENST00000465441 DNMBPQ6XZF7 1577 aa38.04■■■■□ 3.68
CSPG5-204ENST00000465441 AQRO60306 1485 aaKnown RBP eCLIP37.84■■■■□ 3.65
CSPG5-204ENST00000465441 POLA1P09884 1462 aaPredicted RBP37.83■■■■□ 3.65
CSPG5-204ENST00000465441 TARBP1Q13395 1621 aaKnown RBP37.83■■■■□ 3.65
CSPG5-204ENST00000465441 EIF4G3O43432 1585 aaKnown RBP37.82■■■■□ 3.65
CSPG5-204ENST00000465441 SUPT5HO00267 1087 aaKnown RBP37.79■■■■□ 3.64
CSPG5-204ENST00000465441 RAD54L2Q9Y4B4 1467 aa37.74■■■■□ 3.63
CSPG5-204ENST00000465441 SOGA1O94964 1423 aa37.73■■■■□ 3.63
CSPG5-204ENST00000465441 TDRD9Q8NDG6 1382 aaKnown RBP37.65■■■■□ 3.62
CSPG5-204ENST00000465441 FBLN2P98095 1184 aa37.62■■■■□ 3.61
CSPG5-204ENST00000465441 FGD5Q6ZNL6 1462 aa37.61■■■■□ 3.61
CSPG5-204ENST00000465441 RIMBP3CA6NJZ7 1639 aa37.61■■■■□ 3.61
CSPG5-204ENST00000465441 RIMBP3BA6NNM3 1639 aa37.61■■■■□ 3.61
CSPG5-204ENST00000465441 RIMBP3Q9UFD9 1639 aa37.61■■■■□ 3.61
CSPG5-204ENST00000465441 CUX1P39880 1505 aa37.61■■■■□ 3.61
CSPG5-204ENST00000465441 CHD1O14646 1710 aa37.52■■■■□ 3.6
CSPG5-204ENST00000465441 ARHGEF11O15085 1522 aa37.51■■■■□ 3.6
CSPG5-204ENST00000465441 WDR97A6NE52 1622 aa37.39■■■■□ 3.58
CSPG5-204ENST00000465441 SNAPC4Q5SXM2 1469 aa37.39■■■■□ 3.58
CSPG5-204ENST00000465441 CYB5RLQ6IPT4 315 aa37.38■■■■□ 3.57
CSPG5-204ENST00000465441 CHMP7Q8WUX9 453 aaPredicted RBP37.36■■■■□ 3.57
CSPG5-204ENST00000465441 GRIN2BQ13224 1484 aa37.33■■■■□ 3.57
CSPG5-204ENST00000465441 MAGI1Q96QZ7 1491 aaPredicted RBP37.27■■■■□ 3.56
CSPG5-204ENST00000465441 GAPVD1Q14C86 1478 aa37.23■■■■□ 3.55
CSPG5-204ENST00000465441 ABCA10Q8WWZ4 1543 aa37.19■■■■□ 3.54
CSPG5-204ENST00000465441 SYNJ2O15056 1496 aa37.17■■■■□ 3.54
CSPG5-204ENST00000465441 ARAP1Q96P48 1450 aa37.17■■■■□ 3.54
CSPG5-204ENST00000465441 CLASP1Q7Z460 1538 aa37.11■■■■□ 3.53
CSPG5-204ENST00000465441 SYNJ1O43426 1573 aa37.11■■■■□ 3.53
CSPG5-204ENST00000465441 WRNQ14191 1432 aaPredicted RBP eCLIP37.1■■■■□ 3.53
CSPG5-204ENST00000465441 PBRM1Q86U86 1689 aa37.09■■■■□ 3.53
CSPG5-204ENST00000465441 ABCA5Q8WWZ7 1642 aa37.06■■■■□ 3.52
CSPG5-204ENST00000465441 TOP2BQ02880 1626 aa37■■■■□ 3.51
CSPG5-204ENST00000465441 BIVM-ERCC5R4GMW8 1640 aa36.98■■■■□ 3.51
CSPG5-204ENST00000465441 TRHP20396 242 aaPredicted RBP36.91■■■■□ 3.5
CSPG5-204ENST00000465441 GRIN2AQ12879 1464 aa36.82■■■■□ 3.49
CSPG5-204ENST00000465441 FHAD1B1AJZ9 1412 aa36.76■■■■□ 3.48
CSPG5-204ENST00000465441 ADAMTS12P58397 1594 aa36.76■■■■□ 3.48
CSPG5-204ENST00000465441 NUP160Q12769 1436 aa36.71■■■■□ 3.47
CSPG5-204ENST00000465441 ERICH3Q5RHP9 1530 aa36.7■■■■□ 3.47
CSPG5-204ENST00000465441 CEP170Q5SW79 1584 aa36.67■■■■□ 3.46
CSPG5-204ENST00000465441 ERCC6L2Q5T890 1561 aa36.61■■■■□ 3.45
CSPG5-204ENST00000465441 JPH4Q96JJ6 628 aa36.47■■■■□ 3.43
CSPG5-204ENST00000465441 SHROOM2Q13796 1616 aa36.47■■■■□ 3.43
CSPG5-204ENST00000465441 IGF1RP08069 1367 aa36.4■■■■□ 3.42
CSPG5-204ENST00000465441 PRG4Q92954 1404 aaPredicted RBP36.39■■■■□ 3.42
CSPG5-204ENST00000465441 KIF27Q86VH2 1401 aa36.35■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms