RNA–Protein interactions for RNA: ENST00000465209.1

COL11A1-207, Transcript of collagen type XI alpha 1 chain, humanhuman

TSL 2

Gene COL11A1, Length 297 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1-207ENST00000465209 NISCHQ9Y2I1 1504 aa27.97■■■□□ 2.07
COL11A1-207ENST00000465209 CCDC180Q9P1Z9 1646 aa25.21■■□□□ 1.63
COL11A1-207ENST00000465209 ABCC9O60706 1549 aa25.19■■□□□ 1.62
COL11A1-207ENST00000465209 RB1CC1Q8TDY2 1594 aa23.97■■□□□ 1.43
COL11A1-207ENST00000465209 NACADO15069 1562 aa23.8■■□□□ 1.4
COL11A1-207ENST00000465209 DNAJC5BQ9UF47 199 aa23.74■■□□□ 1.39
COL11A1-207ENST00000465209 UNC13AQ9UPW8 1703 aa23.56■■□□□ 1.36
COL11A1-207ENST00000465209 MYO15BQ96JP2 1530 aa23.49■■□□□ 1.35
COL11A1-207ENST00000465209 DCAF8L2P0C7V8 631 aa23.39■■□□□ 1.33
COL11A1-207ENST00000465209 BICRAQ9NZM4 1560 aa23.37■■□□□ 1.33
COL11A1-207ENST00000465209 PABPN1Q86U42 306 aaKnown RBP eCLIP23.37■■□□□ 1.33
COL11A1-207ENST00000465209 ZCCHC6Q5VYS8 1495 aaKnown RBP23.2■■□□□ 1.3
COL11A1-207ENST00000465209 DCAF1Q9Y4B6 1507 aa23.14■■□□□ 1.3
COL11A1-207ENST00000465209 SHROOM4Q9ULL8 1493 aa23.01■■□□□ 1.27
COL11A1-207ENST00000465209 SCRIBQ14160 1630 aa22.9■■□□□ 1.26
COL11A1-207ENST00000465209 CC2D2AQ9P2K1 1620 aa22.82■■□□□ 1.24
COL11A1-207ENST00000465209 EIF4G1Q04637 1599 aaKnown RBP22.76■■□□□ 1.23
COL11A1-207ENST00000465209 CECR2Q9BXF3 1484 aa22.72■■□□□ 1.23
COL11A1-207ENST00000465209 NCAPD3P42695 1498 aa21.97■■□□□ 1.11
COL11A1-207ENST00000465209 ATAD2BQ9ULI0 1458 aa21.89■■□□□ 1.09
COL11A1-207ENST00000465209 SMARCA4P51532 1647 aa21.88■■□□□ 1.09
COL11A1-207ENST00000465209 HMGXB3Q12766 1538 aa21.84■■□□□ 1.09
COL11A1-207ENST00000465209 DNAJC5Q9H3Z4 198 aa21.83■■□□□ 1.09
COL11A1-207ENST00000465209 SMARCA2P51531 1590 aa21.81■■□□□ 1.08
COL11A1-207ENST00000465209 CUX2O14529 1486 aa21.8■■□□□ 1.08
COL11A1-207ENST00000465209 ERCC6Q03468 1493 aa21.71■■□□□ 1.07
COL11A1-207ENST00000465209 PEG3Q9GZU2 1588 aa21.7■■□□□ 1.06
COL11A1-207ENST00000465209 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
COL11A1-207ENST00000465209 NESP48681 1621 aa21.66■■□□□ 1.06
COL11A1-207ENST00000465209 BAZ1BQ9UIG0 1483 aaKnown RBP21.63■■□□□ 1.05
COL11A1-207ENST00000465209 MROH2BQ7Z745 1585 aa21.56■■□□□ 1.04
COL11A1-207ENST00000465209 THOC2Q8NI27 1593 aaKnown RBP21.54■■□□□ 1.04
COL11A1-207ENST00000465209 LAMC3Q9Y6N6 1575 aa21.5■■□□□ 1.03
COL11A1-207ENST00000465209 KIF21AQ7Z4S6 1674 aa21.43■■□□□ 1.02
COL11A1-207ENST00000465209 WIZO95785 1651 aa21.31■■□□□ 1
COL11A1-207ENST00000465209 PDS5BQ9NTI5 1447 aa21.29■■□□□ 1
COL11A1-207ENST00000465209 CADPSQ9ULU8 1353 aa21.25■□□□□ 0.99
COL11A1-207ENST00000465209 WDR62O43379 1518 aa21.19■□□□□ 0.98
COL11A1-207ENST00000465209 MRC2Q9UBG0 1479 aa21.18■□□□□ 0.98
COL11A1-207ENST00000465209 CEP164Q9UPV0 1460 aa21.06■□□□□ 0.96
COL11A1-207ENST00000465209 RSF1Q96T23 1441 aaPredicted RBP21.05■□□□□ 0.96
COL11A1-207ENST00000465209 CFTRP13569 1480 aa21.04■□□□□ 0.96
COL11A1-207ENST00000465209 TOP2AP11388 1531 aaKnown RBP21.03■□□□□ 0.96
COL11A1-207ENST00000465209 FANCD2Q9BXW9 1451 aa21.02■□□□□ 0.96
COL11A1-207ENST00000465209 PRDM2Q13029 1718 aa20.9■□□□□ 0.94
COL11A1-207ENST00000465209 URB2Q14146 1524 aaKnown RBP20.9■□□□□ 0.94
COL11A1-207ENST00000465209 CCDC88BA6NC98 1476 aa20.75■□□□□ 0.91
COL11A1-207ENST00000465209 TRIM41Q8WV44 630 aa20.73■□□□□ 0.91
COL11A1-207ENST00000465209 OSCARQ8IYS5 282 aa20.65■□□□□ 0.9
COL11A1-207ENST00000465209 TOPBP1Q92547 1522 aa20.64■□□□□ 0.9
COL11A1-207ENST00000465209 ZNF608Q9ULD9 1512 aaPredicted RBP20.64■□□□□ 0.9
COL11A1-207ENST00000465209 IFT140Q96RY7 1462 aa20.63■□□□□ 0.89
COL11A1-207ENST00000465209 DNMBPQ6XZF7 1577 aa20.57■□□□□ 0.88
COL11A1-207ENST00000465209 EIF4G3O43432 1585 aaKnown RBP20.56■□□□□ 0.88
COL11A1-207ENST00000465209 RIMBP3CA6NJZ7 1639 aa20.55■□□□□ 0.88
COL11A1-207ENST00000465209 RIMBP3BA6NNM3 1639 aa20.55■□□□□ 0.88
COL11A1-207ENST00000465209 RIMBP3Q9UFD9 1639 aa20.55■□□□□ 0.88
COL11A1-207ENST00000465209 ABCC8Q09428 1581 aa20.54■□□□□ 0.88
COL11A1-207ENST00000465209 TARBP1Q13395 1621 aaKnown RBP20.52■□□□□ 0.88
COL11A1-207ENST00000465209 ARHGEF11O15085 1522 aa20.46■□□□□ 0.87
COL11A1-207ENST00000465209 CHD1O14646 1710 aa20.44■□□□□ 0.86
COL11A1-207ENST00000465209 POLA1P09884 1462 aaPredicted RBP20.43■□□□□ 0.86
COL11A1-207ENST00000465209 AQRO60306 1485 aaKnown RBP eCLIP20.4■□□□□ 0.86
COL11A1-207ENST00000465209 RAD54L2Q9Y4B4 1467 aa20.32■□□□□ 0.84
COL11A1-207ENST00000465209 WDR97A6NE52 1622 aa20.3■□□□□ 0.84
COL11A1-207ENST00000465209 CUX1P39880 1505 aa20.27■□□□□ 0.84
COL11A1-207ENST00000465209 FGD5Q6ZNL6 1462 aa20.27■□□□□ 0.84
COL11A1-207ENST00000465209 ARAP1Q96P48 1450 aa20.26■□□□□ 0.83
COL11A1-207ENST00000465209 SOGA1O94964 1423 aa20.25■□□□□ 0.83
COL11A1-207ENST00000465209 TDRD9Q8NDG6 1382 aaKnown RBP20.22■□□□□ 0.83
COL11A1-207ENST00000465209 SNAPC4Q5SXM2 1469 aa20.22■□□□□ 0.83
COL11A1-207ENST00000465209 CLASP1Q7Z460 1538 aa20.21■□□□□ 0.83
COL11A1-207ENST00000465209 CYB5RLQ6IPT4 315 aa20.17■□□□□ 0.82
COL11A1-207ENST00000465209 MAGI1Q96QZ7 1491 aaPredicted RBP20.16■□□□□ 0.82
COL11A1-207ENST00000465209 FBLN2P98095 1184 aa20.14■□□□□ 0.81
COL11A1-207ENST00000465209 PBRM1Q86U86 1689 aa20.13■□□□□ 0.81
COL11A1-207ENST00000465209 GRIN2BQ13224 1484 aa20.12■□□□□ 0.81
COL11A1-207ENST00000465209 SYNJ1O43426 1573 aa20.12■□□□□ 0.81
COL11A1-207ENST00000465209 SYNJ2O15056 1496 aa20.09■□□□□ 0.81
COL11A1-207ENST00000465209 ABCA5Q8WWZ7 1642 aa20.09■□□□□ 0.81
COL11A1-207ENST00000465209 ABCA10Q8WWZ4 1543 aa20.05■□□□□ 0.8
COL11A1-207ENST00000465209 GAPVD1Q14C86 1478 aa20.04■□□□□ 0.8
COL11A1-207ENST00000465209 CHMP7Q8WUX9 453 aaPredicted RBP20.01■□□□□ 0.79
COL11A1-207ENST00000465209 BIVM-ERCC5R4GMW8 1640 aa19.95■□□□□ 0.78
COL11A1-207ENST00000465209 ADAMTS12P58397 1594 aa19.92■□□□□ 0.78
COL11A1-207ENST00000465209 TOP2BQ02880 1626 aa19.92■□□□□ 0.78
COL11A1-207ENST00000465209 TRHP20396 242 aaPredicted RBP19.91■□□□□ 0.78
COL11A1-207ENST00000465209 GRIN2AQ12879 1464 aa19.9■□□□□ 0.78
COL11A1-207ENST00000465209 CEP170Q5SW79 1584 aa19.87■□□□□ 0.77
COL11A1-207ENST00000465209 ERCC6L2Q5T890 1561 aa19.87■□□□□ 0.77
COL11A1-207ENST00000465209 WRNQ14191 1432 aaPredicted RBP eCLIP19.87■□□□□ 0.77
COL11A1-207ENST00000465209 NUP160Q12769 1436 aa19.86■□□□□ 0.77
COL11A1-207ENST00000465209 SUPT5HO00267 1087 aaKnown RBP19.85■□□□□ 0.77
COL11A1-207ENST00000465209 SHROOM2Q13796 1616 aa19.84■□□□□ 0.77
COL11A1-207ENST00000465209 ERICH3Q5RHP9 1530 aa19.8■□□□□ 0.76
COL11A1-207ENST00000465209 FHAD1B1AJZ9 1412 aa19.78■□□□□ 0.76
COL11A1-207ENST00000465209 RUSC2Q8N2Y8 1516 aa19.66■□□□□ 0.74
COL11A1-207ENST00000465209 KIF13AQ9H1H9 1805 aa19.62■□□□□ 0.73
COL11A1-207ENST00000465209 PRG4Q92954 1404 aaPredicted RBP19.59■□□□□ 0.73
COL11A1-207ENST00000465209 JPH4Q96JJ6 628 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms