RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 NISCHQ9Y2I1 1504 aa42.78■■■■■ 4.44
CPSF4-209ENST00000465132 ABCC9O60706 1549 aa38.46■■■■□ 3.75
CPSF4-209ENST00000465132 CCDC180Q9P1Z9 1646 aa38.37■■■■□ 3.73
CPSF4-209ENST00000465132 RB1CC1Q8TDY2 1594 aa36.57■■■■□ 3.44
CPSF4-209ENST00000465132 NACADO15069 1562 aa36.32■■■■□ 3.4
CPSF4-209ENST00000465132 DNAJC5BQ9UF47 199 aa36.16■■■■□ 3.38
CPSF4-209ENST00000465132 DCAF8L2P0C7V8 631 aa36.13■■■■□ 3.37
CPSF4-209ENST00000465132 MYO15BQ96JP2 1530 aa35.83■■■■□ 3.33
CPSF4-209ENST00000465132 PABPN1Q86U42 306 aaKnown RBP eCLIP35.82■■■■□ 3.32
CPSF4-209ENST00000465132 UNC13AQ9UPW8 1703 aa35.68■■■■□ 3.3
CPSF4-209ENST00000465132 BICRAQ9NZM4 1560 aa35.51■■■■□ 3.28
CPSF4-209ENST00000465132 ZCCHC6Q5VYS8 1495 aaKnown RBP35.44■■■■□ 3.26
CPSF4-209ENST00000465132 DCAF1Q9Y4B6 1507 aa35.33■■■■□ 3.25
CPSF4-209ENST00000465132 SHROOM4Q9ULL8 1493 aa35.05■■■■□ 3.2
CPSF4-209ENST00000465132 SCRIBQ14160 1630 aa34.97■■■■□ 3.19
CPSF4-209ENST00000465132 CC2D2AQ9P2K1 1620 aa34.72■■■■□ 3.15
CPSF4-209ENST00000465132 CECR2Q9BXF3 1484 aa34.66■■■■□ 3.14
CPSF4-209ENST00000465132 EIF4G1Q04637 1599 aaKnown RBP34.65■■■■□ 3.14
CPSF4-209ENST00000465132 NCAPD3P42695 1498 aa33.56■■■□□ 2.96
CPSF4-209ENST00000465132 ATAD2BQ9ULI0 1458 aa33.44■■■□□ 2.94
CPSF4-209ENST00000465132 SMARCA4P51532 1647 aa33.36■■■□□ 2.93
CPSF4-209ENST00000465132 SMARCA2P51531 1590 aa33.32■■■□□ 2.92
CPSF4-209ENST00000465132 HMGXB3Q12766 1538 aa33.28■■■□□ 2.92
CPSF4-209ENST00000465132 DNAJC5Q9H3Z4 198 aa33.25■■■□□ 2.91
CPSF4-209ENST00000465132 ERCC6Q03468 1493 aa33.2■■■□□ 2.91
CPSF4-209ENST00000465132 BAZ1AQ9NRL2 1556 aaPredicted RBP33.2■■■□□ 2.91
CPSF4-209ENST00000465132 CUX2O14529 1486 aa33.18■■■□□ 2.9
CPSF4-209ENST00000465132 BAZ1BQ9UIG0 1483 aaKnown RBP33.1■■■□□ 2.89
CPSF4-209ENST00000465132 PEG3Q9GZU2 1588 aa33.05■■■□□ 2.88
CPSF4-209ENST00000465132 NESP48681 1621 aa33.02■■■□□ 2.88
CPSF4-209ENST00000465132 MROH2BQ7Z745 1585 aa32.96■■■□□ 2.87
CPSF4-209ENST00000465132 LAMC3Q9Y6N6 1575 aa32.77■■■□□ 2.84
CPSF4-209ENST00000465132 THOC2Q8NI27 1593 aaKnown RBP32.68■■■□□ 2.82
CPSF4-209ENST00000465132 PDS5BQ9NTI5 1447 aa32.61■■■□□ 2.81
CPSF4-209ENST00000465132 KIF21AQ7Z4S6 1674 aa32.54■■■□□ 2.8
CPSF4-209ENST00000465132 CADPSQ9ULU8 1353 aa32.54■■■□□ 2.8
CPSF4-209ENST00000465132 WIZO95785 1651 aa32.53■■■□□ 2.8
CPSF4-209ENST00000465132 MRC2Q9UBG0 1479 aa32.33■■■□□ 2.77
CPSF4-209ENST00000465132 RSF1Q96T23 1441 aaPredicted RBP32.27■■■□□ 2.76
CPSF4-209ENST00000465132 WDR62O43379 1518 aa32.24■■■□□ 2.75
CPSF4-209ENST00000465132 CEP164Q9UPV0 1460 aa32.17■■■□□ 2.74
CPSF4-209ENST00000465132 CFTRP13569 1480 aa32.15■■■□□ 2.74
CPSF4-209ENST00000465132 FANCD2Q9BXW9 1451 aa32.15■■■□□ 2.74
CPSF4-209ENST00000465132 TOP2AP11388 1531 aaKnown RBP32.14■■■□□ 2.74
CPSF4-209ENST00000465132 URB2Q14146 1524 aaKnown RBP31.89■■■□□ 2.7
CPSF4-209ENST00000465132 CCDC88BA6NC98 1476 aa31.79■■■□□ 2.68
CPSF4-209ENST00000465132 TRIM41Q8WV44 630 aa31.73■■■□□ 2.67
CPSF4-209ENST00000465132 PRDM2Q13029 1718 aa31.72■■■□□ 2.67
CPSF4-209ENST00000465132 OSCARQ8IYS5 282 aa31.67■■■□□ 2.66
CPSF4-209ENST00000465132 IFT140Q96RY7 1462 aa31.55■■■□□ 2.64
CPSF4-209ENST00000465132 TOPBP1Q92547 1522 aa31.53■■■□□ 2.64
CPSF4-209ENST00000465132 ZNF608Q9ULD9 1512 aaPredicted RBP31.5■■■□□ 2.63
CPSF4-209ENST00000465132 ABCC8Q09428 1581 aa31.46■■■□□ 2.63
CPSF4-209ENST00000465132 DNMBPQ6XZF7 1577 aa31.4■■■□□ 2.62
CPSF4-209ENST00000465132 EIF4G3O43432 1585 aaKnown RBP31.3■■■□□ 2.6
CPSF4-209ENST00000465132 TARBP1Q13395 1621 aaKnown RBP31.24■■■□□ 2.59
CPSF4-209ENST00000465132 RIMBP3CA6NJZ7 1639 aa31.22■■■□□ 2.59
CPSF4-209ENST00000465132 RIMBP3BA6NNM3 1639 aa31.22■■■□□ 2.59
CPSF4-209ENST00000465132 RIMBP3Q9UFD9 1639 aa31.22■■■□□ 2.59
CPSF4-209ENST00000465132 AQRO60306 1485 aaKnown RBP eCLIP31.21■■■□□ 2.592e-10■■■■■ 120.8
CPSF4-209ENST00000465132 POLA1P09884 1462 aaPredicted RBP31.21■■■□□ 2.59
CPSF4-209ENST00000465132 ARHGEF11O15085 1522 aa31.14■■■□□ 2.57
CPSF4-209ENST00000465132 RAD54L2Q9Y4B4 1467 aa31.1■■■□□ 2.57
CPSF4-209ENST00000465132 SOGA1O94964 1423 aa31.07■■■□□ 2.57
CPSF4-209ENST00000465132 CHD1O14646 1710 aa31.05■■■□□ 2.56
CPSF4-209ENST00000465132 TDRD9Q8NDG6 1382 aaKnown RBP31.03■■■□□ 2.56
CPSF4-209ENST00000465132 FBLN2P98095 1184 aa31.02■■■□□ 2.56
CPSF4-209ENST00000465132 FGD5Q6ZNL6 1462 aa31.01■■■□□ 2.55
CPSF4-209ENST00000465132 CUX1P39880 1505 aa30.97■■■□□ 2.55
CPSF4-209ENST00000465132 CYB5RLQ6IPT4 315 aa30.93■■■□□ 2.54
CPSF4-209ENST00000465132 SUPT5HO00267 1087 aaKnown RBP30.92■■■□□ 2.54
CPSF4-209ENST00000465132 WDR97A6NE52 1622 aa30.91■■■□□ 2.54
CPSF4-209ENST00000465132 SNAPC4Q5SXM2 1469 aa30.89■■■□□ 2.53
CPSF4-209ENST00000465132 ARAP1Q96P48 1450 aa30.83■■■□□ 2.53
CPSF4-209ENST00000465132 GRIN2BQ13224 1484 aa30.81■■■□□ 2.52
CPSF4-209ENST00000465132 MAGI1Q96QZ7 1491 aaPredicted RBP30.81■■■□□ 2.52
CPSF4-209ENST00000465132 CHMP7Q8WUX9 453 aaPredicted RBP30.79■■■□□ 2.52
CPSF4-209ENST00000465132 CLASP1Q7Z460 1538 aa30.74■■■□□ 2.51
CPSF4-209ENST00000465132 SYNJ2O15056 1496 aa30.71■■■□□ 2.51
CPSF4-209ENST00000465132 SYNJ1O43426 1573 aa30.71■■■□□ 2.51
CPSF4-209ENST00000465132 GAPVD1Q14C86 1478 aa30.69■■■□□ 2.5
CPSF4-209ENST00000465132 ABCA10Q8WWZ4 1543 aa30.66■■■□□ 2.5
CPSF4-209ENST00000465132 PBRM1Q86U86 1689 aa30.62■■■□□ 2.49
CPSF4-209ENST00000465132 ABCA5Q8WWZ7 1642 aa30.59■■■□□ 2.49
CPSF4-209ENST00000465132 TRHP20396 242 aaPredicted RBP30.59■■■□□ 2.49
CPSF4-209ENST00000465132 WRNQ14191 1432 aaPredicted RBP eCLIP30.53■■■□□ 2.485e-6■■■■■ 29.2
CPSF4-209ENST00000465132 TOP2BQ02880 1626 aa30.44■■■□□ 2.46
CPSF4-209ENST00000465132 BIVM-ERCC5R4GMW8 1640 aa30.43■■■□□ 2.46
CPSF4-209ENST00000465132 GRIN2AQ12879 1464 aa30.4■■■□□ 2.46
CPSF4-209ENST00000465132 ADAMTS12P58397 1594 aa30.37■■■□□ 2.45
CPSF4-209ENST00000465132 NUP160Q12769 1436 aa30.32■■■□□ 2.44
CPSF4-209ENST00000465132 FHAD1B1AJZ9 1412 aa30.3■■■□□ 2.44
CPSF4-209ENST00000465132 CEP170Q5SW79 1584 aa30.28■■■□□ 2.44
CPSF4-209ENST00000465132 ERCC6L2Q5T890 1561 aa30.26■■■□□ 2.43
CPSF4-209ENST00000465132 ERICH3Q5RHP9 1530 aa30.26■■■□□ 2.43
CPSF4-209ENST00000465132 SHROOM2Q13796 1616 aa30.16■■■□□ 2.42
CPSF4-209ENST00000465132 PRG4Q92954 1404 aaPredicted RBP30.03■■■□□ 2.4
CPSF4-209ENST00000465132 JPH4Q96JJ6 628 aa30.01■■■□□ 2.39
CPSF4-209ENST00000465132 RUSC2Q8N2Y8 1516 aa29.94■■■□□ 2.38
CPSF4-209ENST00000465132 IGF1RP08069 1367 aa29.9■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms