RNA–Protein interactions for RNA: ENST00000465074.1

XRN1-204, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 643 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-204ENST00000465074 NISCHQ9Y2I1 1504 aa29.71■■■□□ 2.35
XRN1-204ENST00000465074 CCDC180Q9P1Z9 1646 aa26.48■■□□□ 1.83
XRN1-204ENST00000465074 ABCC9O60706 1549 aa26.23■■□□□ 1.79
XRN1-204ENST00000465074 DCAF8L2P0C7V8 631 aa25.17■■□□□ 1.62
XRN1-204ENST00000465074 RB1CC1Q8TDY2 1594 aa25.06■■□□□ 1.6
XRN1-204ENST00000465074 NACADO15069 1562 aa24.94■■□□□ 1.58
XRN1-204ENST00000465074 ZCCHC6Q5VYS8 1495 aaKnown RBP24.67■■□□□ 1.54
XRN1-204ENST00000465074 MYO15BQ96JP2 1530 aa24.61■■□□□ 1.53
XRN1-204ENST00000465074 UNC13AQ9UPW8 1703 aa24.54■■□□□ 1.52
XRN1-204ENST00000465074 PABPN1Q86U42 306 aaKnown RBP eCLIP24.52■■□□□ 1.52
XRN1-204ENST00000465074 DCAF1Q9Y4B6 1507 aa24.47■■□□□ 1.51
XRN1-204ENST00000465074 AEBP2Q6ZN18 517 aaPredicted RBP24.41■■□□□ 1.5
XRN1-204ENST00000465074 BICRAQ9NZM4 1560 aa24.29■■□□□ 1.48
XRN1-204ENST00000465074 SCRIBQ14160 1630 aa24.28■■□□□ 1.48
XRN1-204ENST00000465074 DNAJC5BQ9UF47 199 aa24.22■■□□□ 1.47
XRN1-204ENST00000465074 SHROOM4Q9ULL8 1493 aa23.88■■□□□ 1.41
XRN1-204ENST00000465074 EIF4G1Q04637 1599 aaKnown RBP23.68■■□□□ 1.38
XRN1-204ENST00000465074 CC2D2AQ9P2K1 1620 aa23.66■■□□□ 1.38
XRN1-204ENST00000465074 CECR2Q9BXF3 1484 aa23.54■■□□□ 1.36
XRN1-204ENST00000465074 SMARCA4P51532 1647 aa23.12■■□□□ 1.29
XRN1-204ENST00000465074 BAZ1AQ9NRL2 1556 aaPredicted RBP23.05■■□□□ 1.28
XRN1-204ENST00000465074 ATAD2BQ9ULI0 1458 aa23.02■■□□□ 1.28
XRN1-204ENST00000465074 CHIC1Q5VXU3 224 aa23■■□□□ 1.27
XRN1-204ENST00000465074 NCAPD3P42695 1498 aa22.99■■□□□ 1.27
XRN1-204ENST00000465074 SMARCA2P51531 1590 aa22.99■■□□□ 1.27
XRN1-204ENST00000465074 MROH2BQ7Z745 1585 aa22.93■■□□□ 1.26
XRN1-204ENST00000465074 BAZ1BQ9UIG0 1483 aaKnown RBP22.86■■□□□ 1.25
XRN1-204ENST00000465074 HMGXB3Q12766 1538 aa22.86■■□□□ 1.25
XRN1-204ENST00000465074 PEG3Q9GZU2 1588 aa22.8■■□□□ 1.24
XRN1-204ENST00000465074 WIZO95785 1651 aa22.73■■□□□ 1.23
XRN1-204ENST00000465074 ERCC6Q03468 1493 aa22.63■■□□□ 1.21
XRN1-204ENST00000465074 NESP48681 1621 aa22.62■■□□□ 1.21
XRN1-204ENST00000465074 RSF1Q96T23 1441 aaPredicted RBP22.57■■□□□ 1.2
XRN1-204ENST00000465074 LAMC3Q9Y6N6 1575 aa22.46■■□□□ 1.19
XRN1-204ENST00000465074 TOP2AP11388 1531 aaKnown RBP22.4■■□□□ 1.18
XRN1-204ENST00000465074 KIF21AQ7Z4S6 1674 aa22.36■■□□□ 1.17
XRN1-204ENST00000465074 CADPSQ9ULU8 1353 aa22.36■■□□□ 1.17
XRN1-204ENST00000465074 PDS5BQ9NTI5 1447 aa22.33■■□□□ 1.17
XRN1-204ENST00000465074 CUX2O14529 1486 aa22.33■■□□□ 1.16
XRN1-204ENST00000465074 THOC2Q8NI27 1593 aaKnown RBP22.25■■□□□ 1.15
XRN1-204ENST00000465074 CCDC88BA6NC98 1476 aa22.17■■□□□ 1.14
XRN1-204ENST00000465074 CFTRP13569 1480 aa22.15■■□□□ 1.14
XRN1-204ENST00000465074 FANCD2Q9BXW9 1451 aa22.14■■□□□ 1.13
XRN1-204ENST00000465074 CEP164Q9UPV0 1460 aa22.13■■□□□ 1.13
XRN1-204ENST00000465074 MRC2Q9UBG0 1479 aa22.12■■□□□ 1.13
XRN1-204ENST00000465074 SUPT5HO00267 1087 aaKnown RBP22.07■■□□□ 1.12
XRN1-204ENST00000465074 PRDM2Q13029 1718 aa22.04■■□□□ 1.12
XRN1-204ENST00000465074 WDR62O43379 1518 aa22.01■■□□□ 1.11
XRN1-204ENST00000465074 DNAJC5Q9H3Z4 198 aa21.93■■□□□ 1.1
XRN1-204ENST00000465074 URB2Q14146 1524 aaKnown RBP21.92■■□□□ 1.1
XRN1-204ENST00000465074 TOPBP1Q92547 1522 aa21.75■■□□□ 1.07
XRN1-204ENST00000465074 ABCC8Q09428 1581 aa21.7■■□□□ 1.06
XRN1-204ENST00000465074 DNMBPQ6XZF7 1577 aa21.7■■□□□ 1.06
XRN1-204ENST00000465074 IFT140Q96RY7 1462 aa21.64■■□□□ 1.05
XRN1-204ENST00000465074 ZNF608Q9ULD9 1512 aaPredicted RBP21.6■■□□□ 1.05
XRN1-204ENST00000465074 POLA1P09884 1462 aaPredicted RBP21.54■■□□□ 1.04
XRN1-204ENST00000465074 CUX1P39880 1505 aa21.52■■□□□ 1.04
XRN1-204ENST00000465074 RAD54L2Q9Y4B4 1467 aa21.52■■□□□ 1.03
XRN1-204ENST00000465074 TARBP1Q13395 1621 aaKnown RBP21.51■■□□□ 1.03
XRN1-204ENST00000465074 EIF4G3O43432 1585 aaKnown RBP21.51■■□□□ 1.03
XRN1-204ENST00000465074 SOGA1O94964 1423 aa21.5■■□□□ 1.03
XRN1-204ENST00000465074 FGD5Q6ZNL6 1462 aa21.5■■□□□ 1.03
XRN1-204ENST00000465074 AQRO60306 1485 aaKnown RBP eCLIP21.48■■□□□ 1.03
XRN1-204ENST00000465074 OSCARQ8IYS5 282 aa21.47■■□□□ 1.03
XRN1-204ENST00000465074 TDRD9Q8NDG6 1382 aaKnown RBP21.43■■□□□ 1.02
XRN1-204ENST00000465074 FBLN2P98095 1184 aa21.39■■□□□ 1.01
XRN1-204ENST00000465074 CHD1O14646 1710 aa21.32■■□□□ 1
XRN1-204ENST00000465074 WRNQ14191 1432 aaPredicted RBP eCLIP21.32■■□□□ 1
XRN1-204ENST00000465074 TRIM41Q8WV44 630 aa21.3■■□□□ 1
XRN1-204ENST00000465074 SYNJ1O43426 1573 aa21.29■■□□□ 1
XRN1-204ENST00000465074 WDR97A6NE52 1622 aa21.29■■□□□ 1
XRN1-204ENST00000465074 BIVM-ERCC5R4GMW8 1640 aa21.27■■□□□ 1
XRN1-204ENST00000465074 TOP2BQ02880 1626 aa21.26■□□□□ 0.99
XRN1-204ENST00000465074 SNAPC4Q5SXM2 1469 aa21.26■□□□□ 0.99
XRN1-204ENST00000465074 GRIN2BQ13224 1484 aa21.24■□□□□ 0.99
XRN1-204ENST00000465074 GAPVD1Q14C86 1478 aa21.23■□□□□ 0.99
XRN1-204ENST00000465074 PBRM1Q86U86 1689 aa21.23■□□□□ 0.99
XRN1-204ENST00000465074 CHMP7Q8WUX9 453 aaPredicted RBP21.22■□□□□ 0.99
XRN1-204ENST00000465074 ABCA10Q8WWZ4 1543 aa21.22■□□□□ 0.99
XRN1-204ENST00000465074 MAGI1Q96QZ7 1491 aaPredicted RBP21.17■□□□□ 0.98
XRN1-204ENST00000465074 ABCA5Q8WWZ7 1642 aa21.17■□□□□ 0.98
XRN1-204ENST00000465074 RIMBP3CA6NJZ7 1639 aa21.14■□□□□ 0.97
XRN1-204ENST00000465074 RIMBP3BA6NNM3 1639 aa21.14■□□□□ 0.97
XRN1-204ENST00000465074 RIMBP3Q9UFD9 1639 aa21.14■□□□□ 0.97
XRN1-204ENST00000465074 SYNJ2O15056 1496 aa21.11■□□□□ 0.97
XRN1-204ENST00000465074 SENP3Q9H4L4 574 aaPredicted RBP21.1■□□□□ 0.97
XRN1-204ENST00000465074 ARHGEF11O15085 1522 aa21.08■□□□□ 0.96
XRN1-204ENST00000465074 CYB5RLQ6IPT4 315 aa21■□□□□ 0.95
XRN1-204ENST00000465074 ADAMTS12P58397 1594 aa20.99■□□□□ 0.95
XRN1-204ENST00000465074 CLASP1Q7Z460 1538 aa20.99■□□□□ 0.95
XRN1-204ENST00000465074 GRIN2AQ12879 1464 aa20.96■□□□□ 0.95
XRN1-204ENST00000465074 ERICH3Q5RHP9 1530 aa20.96■□□□□ 0.95
XRN1-204ENST00000465074 FHAD1B1AJZ9 1412 aa20.95■□□□□ 0.94
XRN1-204ENST00000465074 ARAP1Q96P48 1450 aa20.89■□□□□ 0.94
XRN1-204ENST00000465074 KIF27Q86VH2 1401 aa20.89■□□□□ 0.94
XRN1-204ENST00000465074 CEP170Q5SW79 1584 aa20.88■□□□□ 0.93
XRN1-204ENST00000465074 NUP160Q12769 1436 aa20.82■□□□□ 0.92
XRN1-204ENST00000465074 IGF1RP08069 1367 aa20.81■□□□□ 0.92
XRN1-204ENST00000465074 CUL7Q14999 1698 aa20.77■□□□□ 0.92
XRN1-204ENST00000465074 ERCC6L2Q5T890 1561 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms