RNA–Protein interactions for RNA: ENST00000464812.1

NUDCD3-204, Transcript of NudC domain containing 3, humanhuman

TSL 5

Gene NUDCD3, Length 811 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-204ENST00000464812 NISCHQ9Y2I1 1504 aa21.45■■□□□ 1.02
NUDCD3-204ENST00000464812 AEBP2Q6ZN18 517 aaPredicted RBP19.37■□□□□ 0.69
NUDCD3-204ENST00000464812 CCDC180Q9P1Z9 1646 aa19.03■□□□□ 0.64
NUDCD3-204ENST00000464812 ABCC9O60706 1549 aa18.68■□□□□ 0.58
NUDCD3-204ENST00000464812 CHIC1Q5VXU3 224 aa18.06■□□□□ 0.48
NUDCD3-204ENST00000464812 ZCCHC6Q5VYS8 1495 aaKnown RBP17.9■□□□□ 0.46
NUDCD3-204ENST00000464812 RB1CC1Q8TDY2 1594 aa17.87■□□□□ 0.45
NUDCD3-204ENST00000464812 NACADO15069 1562 aa17.86■□□□□ 0.45
NUDCD3-204ENST00000464812 MYO15BQ96JP2 1530 aa17.77■□□□□ 0.43
NUDCD3-204ENST00000464812 DCAF8L2P0C7V8 631 aa17.75■□□□□ 0.43
NUDCD3-204ENST00000464812 DCAF1Q9Y4B6 1507 aa17.71■□□□□ 0.43
NUDCD3-204ENST00000464812 UNC13AQ9UPW8 1703 aa17.65■□□□□ 0.42
NUDCD3-204ENST00000464812 BICRAQ9NZM4 1560 aa17.54■□□□□ 0.4
NUDCD3-204ENST00000464812 PABPN1Q86U42 306 aaKnown RBP eCLIP17.45■□□□□ 0.38
NUDCD3-204ENST00000464812 SCRIBQ14160 1630 aa17.4■□□□□ 0.38
NUDCD3-204ENST00000464812 DNAJC5BQ9UF47 199 aa17.31■□□□□ 0.36
NUDCD3-204ENST00000464812 SHROOM4Q9ULL8 1493 aa17.12■□□□□ 0.33
NUDCD3-204ENST00000464812 EIF4G1Q04637 1599 aaKnown RBP16.97■□□□□ 0.31
NUDCD3-204ENST00000464812 CC2D2AQ9P2K1 1620 aa16.91■□□□□ 0.3
NUDCD3-204ENST00000464812 CECR2Q9BXF3 1484 aa16.8■□□□□ 0.28
NUDCD3-204ENST00000464812 SMARCA4P51532 1647 aa16.65■□□□□ 0.26
NUDCD3-204ENST00000464812 MROH2BQ7Z745 1585 aa16.59■□□□□ 0.25
NUDCD3-204ENST00000464812 ATAD2BQ9ULI0 1458 aa16.56■□□□□ 0.24
NUDCD3-204ENST00000464812 BAZ1AQ9NRL2 1556 aaPredicted RBP16.55■□□□□ 0.24
NUDCD3-204ENST00000464812 NCAPD3P42695 1498 aa16.54■□□□□ 0.24
NUDCD3-204ENST00000464812 SENP3Q9H4L4 574 aaPredicted RBP16.5■□□□□ 0.23
NUDCD3-204ENST00000464812 PEG3Q9GZU2 1588 aa16.5■□□□□ 0.23
NUDCD3-204ENST00000464812 SMARCA2P51531 1590 aa16.44■□□□□ 0.22
NUDCD3-204ENST00000464812 HMGXB3Q12766 1538 aa16.43■□□□□ 0.22
NUDCD3-204ENST00000464812 WIZO95785 1651 aa16.4■□□□□ 0.22
NUDCD3-204ENST00000464812 RSF1Q96T23 1441 aaPredicted RBP16.39■□□□□ 0.21
NUDCD3-204ENST00000464812 BAZ1BQ9UIG0 1483 aaKnown RBP16.34■□□□□ 0.21
NUDCD3-204ENST00000464812 PHF23Q9BUL5 403 aaPredicted RBP16.31■□□□□ 0.2
NUDCD3-204ENST00000464812 NESP48681 1621 aa16.23■□□□□ 0.19
NUDCD3-204ENST00000464812 SUPT5HO00267 1087 aaKnown RBP16.18■□□□□ 0.18
NUDCD3-204ENST00000464812 TOP2AP11388 1531 aaKnown RBP16.18■□□□□ 0.18
NUDCD3-204ENST00000464812 LAMC3Q9Y6N6 1575 aa16.04■□□□□ 0.16
NUDCD3-204ENST00000464812 CADPSQ9ULU8 1353 aa16.01■□□□□ 0.15
NUDCD3-204ENST00000464812 KIF21AQ7Z4S6 1674 aa16.01■□□□□ 0.15
NUDCD3-204ENST00000464812 CCDC88BA6NC98 1476 aa15.99■□□□□ 0.15
NUDCD3-204ENST00000464812 THOC2Q8NI27 1593 aaKnown RBP15.98■□□□□ 0.15
NUDCD3-204ENST00000464812 CFTRP13569 1480 aa15.96■□□□□ 0.14
NUDCD3-204ENST00000464812 ERCC6Q03468 1493 aa15.96■□□□□ 0.14
NUDCD3-204ENST00000464812 PDS5BQ9NTI5 1447 aa15.87■□□□□ 0.13
NUDCD3-204ENST00000464812 CUX2O14529 1486 aa15.84■□□□□ 0.13
NUDCD3-204ENST00000464812 FANCD2Q9BXW9 1451 aa15.84■□□□□ 0.13
NUDCD3-204ENST00000464812 PRDM2Q13029 1718 aa15.82■□□□□ 0.12
NUDCD3-204ENST00000464812 WDR62O43379 1518 aa15.79■□□□□ 0.12
NUDCD3-204ENST00000464812 MRC2Q9UBG0 1479 aa15.79■□□□□ 0.12
NUDCD3-204ENST00000464812 CEP164Q9UPV0 1460 aa15.78■□□□□ 0.12
NUDCD3-204ENST00000464812 URB2Q14146 1524 aaKnown RBP15.77■□□□□ 0.11
NUDCD3-204ENST00000464812 TOPBP1Q92547 1522 aa15.62■□□□□ 0.09
NUDCD3-204ENST00000464812 DNMBPQ6XZF7 1577 aa15.58■□□□□ 0.08
NUDCD3-204ENST00000464812 ABCC8Q09428 1581 aa15.57■□□□□ 0.08
NUDCD3-204ENST00000464812 CUX1P39880 1505 aa15.55■□□□□ 0.08
NUDCD3-204ENST00000464812 ZNF608Q9ULD9 1512 aaPredicted RBP15.53■□□□□ 0.08
NUDCD3-204ENST00000464812 TARBP1Q13395 1621 aaKnown RBP15.51■□□□□ 0.07
NUDCD3-204ENST00000464812 POLA1P09884 1462 aaPredicted RBP15.5■□□□□ 0.07
NUDCD3-204ENST00000464812 SYNJ1O43426 1573 aa15.48■□□□□ 0.07
NUDCD3-204ENST00000464812 FOXD1Q16676 465 aa15.47■□□□□ 0.07
NUDCD3-204ENST00000464812 RAD54L2Q9Y4B4 1467 aa15.46■□□□□ 0.07
NUDCD3-204ENST00000464812 BIVM-ERCC5R4GMW8 1640 aa15.45■□□□□ 0.06
NUDCD3-204ENST00000464812 IFT140Q96RY7 1462 aa15.45■□□□□ 0.06
NUDCD3-204ENST00000464812 DNAJC5Q9H3Z4 198 aa15.44■□□□□ 0.06
NUDCD3-204ENST00000464812 FGD5Q6ZNL6 1462 aa15.44■□□□□ 0.06
NUDCD3-204ENST00000464812 WRNQ14191 1432 aaPredicted RBP eCLIP15.43■□□□□ 0.06
NUDCD3-204ENST00000464812 TOP2BQ02880 1626 aa15.42■□□□□ 0.06
NUDCD3-204ENST00000464812 EIF4G3O43432 1585 aaKnown RBP15.41■□□□□ 0.06
NUDCD3-204ENST00000464812 WDR97A6NE52 1622 aa15.39■□□□□ 0.05
NUDCD3-204ENST00000464812 AQRO60306 1485 aaKnown RBP eCLIP15.38■□□□□ 0.05
NUDCD3-204ENST00000464812 SOGA1O94964 1423 aa15.35■□□□□ 0.05
NUDCD3-204ENST00000464812 TDRD9Q8NDG6 1382 aaKnown RBP15.33■□□□□ 0.04
NUDCD3-204ENST00000464812 ABCA10Q8WWZ4 1543 aa15.27■□□□□ 0.04
NUDCD3-204ENST00000464812 ABCA5Q8WWZ7 1642 aa15.27■□□□□ 0.03
NUDCD3-204ENST00000464812 CHD1O14646 1710 aa15.23■□□□□ 0.03
NUDCD3-204ENST00000464812 SNAPC4Q5SXM2 1469 aa15.21■□□□□ 0.03
NUDCD3-204ENST00000464812 TRIM41Q8WV44 630 aa15.21■□□□□ 0.03
NUDCD3-204ENST00000464812 PBRM1Q86U86 1689 aa15.21■□□□□ 0.03
NUDCD3-204ENST00000464812 GAPVD1Q14C86 1478 aa15.19■□□□□ 0.02
NUDCD3-204ENST00000464812 GRIN2BQ13224 1484 aa15.17■□□□□ 0.02
NUDCD3-204ENST00000464812 RUSC2Q8N2Y8 1516 aa15.13■□□□□ 0.01
NUDCD3-204ENST00000464812 OSCARQ8IYS5 282 aa15.13■□□□□ 0.01
NUDCD3-204ENST00000464812 MAGI1Q96QZ7 1491 aaPredicted RBP15.13■□□□□ 0.01
NUDCD3-204ENST00000464812 ADAMTS12P58397 1594 aa15.11■□□□□ 0.01
NUDCD3-204ENST00000464812 SYNJ2O15056 1496 aa15.09■□□□□ 0.01
NUDCD3-204ENST00000464812 CLASP1Q7Z460 1538 aa15.08■□□□□ 0.01
NUDCD3-204ENST00000464812 ERICH3Q5RHP9 1530 aa15.06■□□□□ 0
NUDCD3-204ENST00000464812 RIMBP3CA6NJZ7 1639 aa15.04■□□□□ -0
NUDCD3-204ENST00000464812 RIMBP3BA6NNM3 1639 aa15.04■□□□□ -0
NUDCD3-204ENST00000464812 RIMBP3Q9UFD9 1639 aa15.04■□□□□ -0
NUDCD3-204ENST00000464812 FBLN2P98095 1184 aa15.04■□□□□ -0
NUDCD3-204ENST00000464812 CEP170Q5SW79 1584 aa15.02■□□□□ -0
NUDCD3-204ENST00000464812 ARHGEF11O15085 1522 aa15.02■□□□□ -0
NUDCD3-204ENST00000464812 KIF27Q86VH2 1401 aa15.02■□□□□ -0
NUDCD3-204ENST00000464812 GRIN2AQ12879 1464 aa15.01□□□□□ -0.01
NUDCD3-204ENST00000464812 IGF1RP08069 1367 aa15.01□□□□□ -0.01
NUDCD3-204ENST00000464812 FHAD1B1AJZ9 1412 aa14.99□□□□□ -0.01
NUDCD3-204ENST00000464812 NUP160Q12769 1436 aa14.99□□□□□ -0.01
NUDCD3-204ENST00000464812 CHMP7Q8WUX9 453 aaPredicted RBP14.98□□□□□ -0.01
NUDCD3-204ENST00000464812 EEA1Q15075 1411 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms