RNA–Protein interactions for RNA: ENST00000464800.5

MCF2L-220, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 720 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-220ENST00000464800 NISCHQ9Y2I1 1504 aa37.12■■■■□ 3.53
MCF2L-220ENST00000464800 ABCC9O60706 1549 aa33.68■■■□□ 2.98
MCF2L-220ENST00000464800 CCDC180Q9P1Z9 1646 aa33.53■■■□□ 2.96
MCF2L-220ENST00000464800 RB1CC1Q8TDY2 1594 aa32■■■□□ 2.71
MCF2L-220ENST00000464800 DNAJC5BQ9UF47 199 aa31.71■■■□□ 2.67
MCF2L-220ENST00000464800 NACADO15069 1562 aa31.7■■■□□ 2.67
MCF2L-220ENST00000464800 DCAF8L2P0C7V8 631 aa31.35■■■□□ 2.61
MCF2L-220ENST00000464800 UNC13AQ9UPW8 1703 aa31.32■■■□□ 2.61
MCF2L-220ENST00000464800 PABPN1Q86U42 306 aaKnown RBP eCLIP31.24■■■□□ 2.59
MCF2L-220ENST00000464800 MYO15BQ96JP2 1530 aa31.16■■■□□ 2.58
MCF2L-220ENST00000464800 BICRAQ9NZM4 1560 aa31.05■■■□□ 2.56
MCF2L-220ENST00000464800 ZCCHC6Q5VYS8 1495 aaKnown RBP30.73■■■□□ 2.51
MCF2L-220ENST00000464800 DCAF1Q9Y4B6 1507 aa30.67■■■□□ 2.5
MCF2L-220ENST00000464800 SHROOM4Q9ULL8 1493 aa30.64■■■□□ 2.5
MCF2L-220ENST00000464800 SCRIBQ14160 1630 aa30.48■■■□□ 2.47
MCF2L-220ENST00000464800 CC2D2AQ9P2K1 1620 aa30.45■■■□□ 2.47
MCF2L-220ENST00000464800 CECR2Q9BXF3 1484 aa30.37■■■□□ 2.45
MCF2L-220ENST00000464800 EIF4G1Q04637 1599 aaKnown RBP30.32■■■□□ 2.44
MCF2L-220ENST00000464800 DNAJC5Q9H3Z4 198 aa29.35■■■□□ 2.29
MCF2L-220ENST00000464800 NCAPD3P42695 1498 aa29.21■■■□□ 2.27
MCF2L-220ENST00000464800 CUX2O14529 1486 aa29.17■■■□□ 2.26
MCF2L-220ENST00000464800 ERCC6Q03468 1493 aa29.12■■■□□ 2.25
MCF2L-220ENST00000464800 ATAD2BQ9ULI0 1458 aa29.1■■■□□ 2.25
MCF2L-220ENST00000464800 SMARCA4P51532 1647 aa29.05■■■□□ 2.24
MCF2L-220ENST00000464800 SMARCA2P51531 1590 aa29.05■■■□□ 2.24
MCF2L-220ENST00000464800 HMGXB3Q12766 1538 aa29.04■■■□□ 2.24
MCF2L-220ENST00000464800 BAZ1AQ9NRL2 1556 aaPredicted RBP28.86■■■□□ 2.21
MCF2L-220ENST00000464800 NESP48681 1621 aa28.84■■■□□ 2.21
MCF2L-220ENST00000464800 BAZ1BQ9UIG0 1483 aaKnown RBP28.84■■■□□ 2.21
MCF2L-220ENST00000464800 PEG3Q9GZU2 1588 aa28.77■■■□□ 2.2
MCF2L-220ENST00000464800 THOC2Q8NI27 1593 aaKnown RBP28.68■■■□□ 2.18
MCF2L-220ENST00000464800 LAMC3Q9Y6N6 1575 aa28.67■■■□□ 2.18
MCF2L-220ENST00000464800 MROH2BQ7Z745 1585 aa28.58■■■□□ 2.17
MCF2L-220ENST00000464800 KIF21AQ7Z4S6 1674 aa28.56■■■□□ 2.16
MCF2L-220ENST00000464800 PDS5BQ9NTI5 1447 aa28.45■■■□□ 2.15
MCF2L-220ENST00000464800 CADPSQ9ULU8 1353 aa28.29■■■□□ 2.12
MCF2L-220ENST00000464800 WIZO95785 1651 aa28.27■■■□□ 2.12
MCF2L-220ENST00000464800 MRC2Q9UBG0 1479 aa28.26■■■□□ 2.11
MCF2L-220ENST00000464800 WDR62O43379 1518 aa28.21■■■□□ 2.11
MCF2L-220ENST00000464800 CEP164Q9UPV0 1460 aa28.09■■■□□ 2.09
MCF2L-220ENST00000464800 FANCD2Q9BXW9 1451 aa28.02■■■□□ 2.08
MCF2L-220ENST00000464800 TRIM41Q8WV44 630 aa27.97■■■□□ 2.07
MCF2L-220ENST00000464800 CFTRP13569 1480 aa27.95■■■□□ 2.06
MCF2L-220ENST00000464800 TOP2AP11388 1531 aaKnown RBP27.91■■■□□ 2.06
MCF2L-220ENST00000464800 RSF1Q96T23 1441 aaPredicted RBP27.87■■■□□ 2.05
MCF2L-220ENST00000464800 URB2Q14146 1524 aaKnown RBP27.8■■■□□ 2.04
MCF2L-220ENST00000464800 PRDM2Q13029 1718 aa27.8■■■□□ 2.04
MCF2L-220ENST00000464800 OSCARQ8IYS5 282 aa27.7■■■□□ 2.02
MCF2L-220ENST00000464800 CCDC88BA6NC98 1476 aa27.53■■■□□ 2
MCF2L-220ENST00000464800 IFT140Q96RY7 1462 aa27.52■■■□□ 2
MCF2L-220ENST00000464800 ZNF608Q9ULD9 1512 aaPredicted RBP27.48■■□□□ 1.99
MCF2L-220ENST00000464800 RIMBP3CA6NJZ7 1639 aa27.48■■□□□ 1.99
MCF2L-220ENST00000464800 RIMBP3BA6NNM3 1639 aa27.48■■□□□ 1.99
MCF2L-220ENST00000464800 RIMBP3Q9UFD9 1639 aa27.48■■□□□ 1.99
MCF2L-220ENST00000464800 TOPBP1Q92547 1522 aa27.46■■□□□ 1.99
MCF2L-220ENST00000464800 EIF4G3O43432 1585 aaKnown RBP27.4■■□□□ 1.98
MCF2L-220ENST00000464800 ABCC8Q09428 1581 aa27.39■■□□□ 1.98
MCF2L-220ENST00000464800 DNMBPQ6XZF7 1577 aa27.37■■□□□ 1.97
MCF2L-220ENST00000464800 ARHGEF11O15085 1522 aa27.34■■□□□ 1.97
MCF2L-220ENST00000464800 CHD1O14646 1710 aa27.27■■□□□ 1.96
MCF2L-220ENST00000464800 TARBP1Q13395 1621 aaKnown RBP27.27■■□□□ 1.96
MCF2L-220ENST00000464800 AQRO60306 1485 aaKnown RBP eCLIP27.19■■□□□ 1.94
MCF2L-220ENST00000464800 POLA1P09884 1462 aaPredicted RBP27.16■■□□□ 1.94
MCF2L-220ENST00000464800 CYB5RLQ6IPT4 315 aa27.06■■□□□ 1.92
MCF2L-220ENST00000464800 FBLN2P98095 1184 aa27.04■■□□□ 1.92
MCF2L-220ENST00000464800 ARAP1Q96P48 1450 aa27.04■■□□□ 1.92
MCF2L-220ENST00000464800 RAD54L2Q9Y4B4 1467 aa27.04■■□□□ 1.92
MCF2L-220ENST00000464800 WDR97A6NE52 1622 aa27.01■■□□□ 1.91
MCF2L-220ENST00000464800 SOGA1O94964 1423 aa26.99■■□□□ 1.91
MCF2L-220ENST00000464800 FGD5Q6ZNL6 1462 aa26.96■■□□□ 1.91
MCF2L-220ENST00000464800 TDRD9Q8NDG6 1382 aaKnown RBP26.96■■□□□ 1.91
MCF2L-220ENST00000464800 SNAPC4Q5SXM2 1469 aa26.94■■□□□ 1.9
MCF2L-220ENST00000464800 CLASP1Q7Z460 1538 aa26.9■■□□□ 1.9
MCF2L-220ENST00000464800 CUX1P39880 1505 aa26.9■■□□□ 1.9
MCF2L-220ENST00000464800 SYNJ1O43426 1573 aa26.88■■□□□ 1.89
MCF2L-220ENST00000464800 MAGI1Q96QZ7 1491 aaPredicted RBP26.87■■□□□ 1.89
MCF2L-220ENST00000464800 TRHP20396 242 aaPredicted RBP26.87■■□□□ 1.89
MCF2L-220ENST00000464800 GRIN2BQ13224 1484 aa26.83■■□□□ 1.89
MCF2L-220ENST00000464800 PBRM1Q86U86 1689 aa26.8■■□□□ 1.88
MCF2L-220ENST00000464800 CHMP7Q8WUX9 453 aaPredicted RBP26.8■■□□□ 1.88
MCF2L-220ENST00000464800 SYNJ2O15056 1496 aa26.78■■□□□ 1.88
MCF2L-220ENST00000464800 GAPVD1Q14C86 1478 aa26.69■■□□□ 1.86
MCF2L-220ENST00000464800 ABCA5Q8WWZ7 1642 aa26.67■■□□□ 1.86
MCF2L-220ENST00000464800 ABCA10Q8WWZ4 1543 aa26.64■■□□□ 1.85
MCF2L-220ENST00000464800 GRIN2AQ12879 1464 aa26.5■■□□□ 1.83
MCF2L-220ENST00000464800 ADAMTS12P58397 1594 aa26.49■■□□□ 1.83
MCF2L-220ENST00000464800 WRNQ14191 1432 aaPredicted RBP eCLIP26.46■■□□□ 1.83
MCF2L-220ENST00000464800 BIVM-ERCC5R4GMW8 1640 aa26.45■■□□□ 1.82
MCF2L-220ENST00000464800 CEP170Q5SW79 1584 aa26.43■■□□□ 1.82
MCF2L-220ENST00000464800 ERCC6L2Q5T890 1561 aa26.43■■□□□ 1.82
MCF2L-220ENST00000464800 TOP2BQ02880 1626 aa26.42■■□□□ 1.82
MCF2L-220ENST00000464800 NUP160Q12769 1436 aa26.4■■□□□ 1.82
MCF2L-220ENST00000464800 SUPT5HO00267 1087 aaKnown RBP26.4■■□□□ 1.82
MCF2L-220ENST00000464800 SHROOM2Q13796 1616 aa26.37■■□□□ 1.81
MCF2L-220ENST00000464800 FHAD1B1AJZ9 1412 aa26.34■■□□□ 1.81
MCF2L-220ENST00000464800 ERICH3Q5RHP9 1530 aa26.32■■□□□ 1.8
MCF2L-220ENST00000464800 AEBP2Q6ZN18 517 aaPredicted RBP26.3■■□□□ 1.8
MCF2L-220ENST00000464800 KIF13AQ9H1H9 1805 aa26.18■■□□□ 1.78
MCF2L-220ENST00000464800 PRG4Q92954 1404 aaPredicted RBP26.15■■□□□ 1.78
MCF2L-220ENST00000464800 RUSC2Q8N2Y8 1516 aa26.14■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms