RNA–Protein interactions for RNA: ENST00000464783.1

RPUSD3-211, Transcript of RNA pseudouridylate synthase domain containing 3, humanhuman

TSL 2

Gene RPUSD3, Length 1,149 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3-211ENST00000464783 NISCHQ9Y2I1 1504 aa29.01■■■□□ 2.23
RPUSD3-211ENST00000464783 CCDC180Q9P1Z9 1646 aa25.83■■□□□ 1.73
RPUSD3-211ENST00000464783 ABCC9O60706 1549 aa25.17■■□□□ 1.62
RPUSD3-211ENST00000464783 RB1CC1Q8TDY2 1594 aa24.26■■□□□ 1.47
RPUSD3-211ENST00000464783 DCAF8L2P0C7V8 631 aa24.26■■□□□ 1.47
RPUSD3-211ENST00000464783 NACADO15069 1562 aa24.22■■□□□ 1.47
RPUSD3-211ENST00000464783 ZCCHC6Q5VYS8 1495 aaKnown RBP24.19■■□□□ 1.46
RPUSD3-211ENST00000464783 MYO15BQ96JP2 1530 aa24.05■■□□□ 1.44
RPUSD3-211ENST00000464783 DCAF1Q9Y4B6 1507 aa23.99■■□□□ 1.43
RPUSD3-211ENST00000464783 UNC13AQ9UPW8 1703 aa23.78■■□□□ 1.4
RPUSD3-211ENST00000464783 SCRIBQ14160 1630 aa23.59■■□□□ 1.37
RPUSD3-211ENST00000464783 PABPN1Q86U42 306 aaKnown RBP eCLIP23.5■■□□□ 1.35
RPUSD3-211ENST00000464783 BICRAQ9NZM4 1560 aa23.48■■□□□ 1.35
RPUSD3-211ENST00000464783 SHROOM4Q9ULL8 1493 aa23.24■■□□□ 1.31
RPUSD3-211ENST00000464783 DNAJC5BQ9UF47 199 aa22.92■■□□□ 1.26
RPUSD3-211ENST00000464783 EIF4G1Q04637 1599 aaKnown RBP22.88■■□□□ 1.25
RPUSD3-211ENST00000464783 CC2D2AQ9P2K1 1620 aa22.78■■□□□ 1.24
RPUSD3-211ENST00000464783 CECR2Q9BXF3 1484 aa22.59■■□□□ 1.21
RPUSD3-211ENST00000464783 SMARCA4P51532 1647 aa22.54■■□□□ 1.2
RPUSD3-211ENST00000464783 BAZ1AQ9NRL2 1556 aaPredicted RBP22.52■■□□□ 1.2
RPUSD3-211ENST00000464783 SMARCA2P51531 1590 aa22.37■■□□□ 1.17
RPUSD3-211ENST00000464783 MROH2BQ7Z745 1585 aa22.36■■□□□ 1.17
RPUSD3-211ENST00000464783 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
RPUSD3-211ENST00000464783 NCAPD3P42695 1498 aa22.29■■□□□ 1.16
RPUSD3-211ENST00000464783 PEG3Q9GZU2 1588 aa22.28■■□□□ 1.16
RPUSD3-211ENST00000464783 HMGXB3Q12766 1538 aa22.25■■□□□ 1.15
RPUSD3-211ENST00000464783 BAZ1BQ9UIG0 1483 aaKnown RBP22.22■■□□□ 1.15
RPUSD3-211ENST00000464783 WIZO95785 1651 aa22.19■■□□□ 1.14
RPUSD3-211ENST00000464783 RSF1Q96T23 1441 aaPredicted RBP22.11■■□□□ 1.13
RPUSD3-211ENST00000464783 TOP2AP11388 1531 aaKnown RBP21.93■■□□□ 1.1
RPUSD3-211ENST00000464783 NESP48681 1621 aa21.78■■□□□ 1.08
RPUSD3-211ENST00000464783 LAMC3Q9Y6N6 1575 aa21.77■■□□□ 1.08
RPUSD3-211ENST00000464783 ERCC6Q03468 1493 aa21.72■■□□□ 1.07
RPUSD3-211ENST00000464783 SUPT5HO00267 1087 aaKnown RBP21.67■■□□□ 1.06
RPUSD3-211ENST00000464783 CADPSQ9ULU8 1353 aa21.66■■□□□ 1.06
RPUSD3-211ENST00000464783 CCDC88BA6NC98 1476 aa21.64■■□□□ 1.05
RPUSD3-211ENST00000464783 KIF21AQ7Z4S6 1674 aa21.61■■□□□ 1.05
RPUSD3-211ENST00000464783 PDS5BQ9NTI5 1447 aa21.59■■□□□ 1.05
RPUSD3-211ENST00000464783 PRDM2Q13029 1718 aa21.55■■□□□ 1.04
RPUSD3-211ENST00000464783 CFTRP13569 1480 aa21.55■■□□□ 1.04
RPUSD3-211ENST00000464783 THOC2Q8NI27 1593 aaKnown RBP21.46■■□□□ 1.03
RPUSD3-211ENST00000464783 FANCD2Q9BXW9 1451 aa21.45■■□□□ 1.03
RPUSD3-211ENST00000464783 CEP164Q9UPV0 1460 aa21.44■■□□□ 1.02
RPUSD3-211ENST00000464783 CUX2O14529 1486 aa21.41■■□□□ 1.02
RPUSD3-211ENST00000464783 MRC2Q9UBG0 1479 aa21.38■■□□□ 1.01
RPUSD3-211ENST00000464783 WDR62O43379 1518 aa21.3■■□□□ 1
RPUSD3-211ENST00000464783 URB2Q14146 1524 aaKnown RBP21.22■□□□□ 0.99
RPUSD3-211ENST00000464783 ABCC8Q09428 1581 aa21.13■□□□□ 0.97
RPUSD3-211ENST00000464783 DNMBPQ6XZF7 1577 aa21.13■□□□□ 0.97
RPUSD3-211ENST00000464783 TOPBP1Q92547 1522 aa21.12■□□□□ 0.97
RPUSD3-211ENST00000464783 CUX1P39880 1505 aa20.99■□□□□ 0.95
RPUSD3-211ENST00000464783 IFT140Q96RY7 1462 aa20.96■□□□□ 0.95
RPUSD3-211ENST00000464783 POLA1P09884 1462 aaPredicted RBP20.94■□□□□ 0.94
RPUSD3-211ENST00000464783 FGD5Q6ZNL6 1462 aa20.92■□□□□ 0.94
RPUSD3-211ENST00000464783 TARBP1Q13395 1621 aaKnown RBP20.89■□□□□ 0.93
RPUSD3-211ENST00000464783 WRNQ14191 1432 aaPredicted RBP eCLIP20.88■□□□□ 0.93
RPUSD3-211ENST00000464783 BIVM-ERCC5R4GMW8 1640 aa20.87■□□□□ 0.93
RPUSD3-211ENST00000464783 TOP2BQ02880 1626 aa20.86■□□□□ 0.93
RPUSD3-211ENST00000464783 SYNJ1O43426 1573 aa20.85■□□□□ 0.93
RPUSD3-211ENST00000464783 ZNF608Q9ULD9 1512 aaPredicted RBP20.85■□□□□ 0.93
RPUSD3-211ENST00000464783 RAD54L2Q9Y4B4 1467 aa20.85■□□□□ 0.93
RPUSD3-211ENST00000464783 SOGA1O94964 1423 aa20.85■□□□□ 0.93
RPUSD3-211ENST00000464783 EIF4G3O43432 1585 aaKnown RBP20.84■□□□□ 0.93
RPUSD3-211ENST00000464783 WDR97A6NE52 1622 aa20.78■□□□□ 0.92
RPUSD3-211ENST00000464783 AQRO60306 1485 aaKnown RBP eCLIP20.75■□□□□ 0.912e-7■■□□□ 14.5
RPUSD3-211ENST00000464783 TDRD9Q8NDG6 1382 aaKnown RBP20.72■□□□□ 0.91
RPUSD3-211ENST00000464783 ABCA10Q8WWZ4 1543 aa20.69■□□□□ 0.9
RPUSD3-211ENST00000464783 PBRM1Q86U86 1689 aa20.67■□□□□ 0.9
RPUSD3-211ENST00000464783 ABCA5Q8WWZ7 1642 aa20.64■□□□□ 0.9
RPUSD3-211ENST00000464783 GAPVD1Q14C86 1478 aa20.62■□□□□ 0.89
RPUSD3-211ENST00000464783 DNAJC5Q9H3Z4 198 aa20.61■□□□□ 0.89
RPUSD3-211ENST00000464783 GRIN2BQ13224 1484 aa20.61■□□□□ 0.89
RPUSD3-211ENST00000464783 CHD1O14646 1710 aa20.6■□□□□ 0.89
RPUSD3-211ENST00000464783 SNAPC4Q5SXM2 1469 aa20.58■□□□□ 0.89
RPUSD3-211ENST00000464783 MAGI1Q96QZ7 1491 aaPredicted RBP20.55■□□□□ 0.88
RPUSD3-211ENST00000464783 FBLN2P98095 1184 aa20.53■□□□□ 0.88
RPUSD3-211ENST00000464783 OSCARQ8IYS5 282 aa20.52■□□□□ 0.88
RPUSD3-211ENST00000464783 SYNJ2O15056 1496 aa20.47■□□□□ 0.87
RPUSD3-211ENST00000464783 ERICH3Q5RHP9 1530 aa20.47■□□□□ 0.87
RPUSD3-211ENST00000464783 CHMP7Q8WUX9 453 aaPredicted RBP20.46■□□□□ 0.87
RPUSD3-211ENST00000464783 TRIM41Q8WV44 630 aa20.46■□□□□ 0.87
RPUSD3-211ENST00000464783 ADAMTS12P58397 1594 aa20.45■□□□□ 0.86
RPUSD3-211ENST00000464783 KIF27Q86VH2 1401 aa20.44■□□□□ 0.86
RPUSD3-211ENST00000464783 FHAD1B1AJZ9 1412 aa20.37■□□□□ 0.85
RPUSD3-211ENST00000464783 CUL7Q14999 1698 aa20.35■□□□□ 0.85
RPUSD3-211ENST00000464783 GRIN2AQ12879 1464 aa20.35■□□□□ 0.85
RPUSD3-211ENST00000464783 CLASP1Q7Z460 1538 aa20.29■□□□□ 0.84
RPUSD3-211ENST00000464783 IGF1RP08069 1367 aa20.29■□□□□ 0.84
RPUSD3-211ENST00000464783 RUSC2Q8N2Y8 1516 aa20.27■□□□□ 0.83
RPUSD3-211ENST00000464783 CEP170Q5SW79 1584 aa20.25■□□□□ 0.83
RPUSD3-211ENST00000464783 RIMBP3CA6NJZ7 1639 aa20.24■□□□□ 0.83
RPUSD3-211ENST00000464783 RIMBP3BA6NNM3 1639 aa20.24■□□□□ 0.83
RPUSD3-211ENST00000464783 RIMBP3Q9UFD9 1639 aa20.24■□□□□ 0.83
RPUSD3-211ENST00000464783 ARHGEF11O15085 1522 aa20.22■□□□□ 0.83
RPUSD3-211ENST00000464783 NUP160Q12769 1436 aa20.21■□□□□ 0.83
RPUSD3-211ENST00000464783 CHIC1Q5VXU3 224 aa20.21■□□□□ 0.83
RPUSD3-211ENST00000464783 CARMIL1Q5VZK9 1371 aa20.21■□□□□ 0.83
RPUSD3-211ENST00000464783 RAPGEF2Q9Y4G8 1499 aa20.12■□□□□ 0.81
RPUSD3-211ENST00000464783 SHROOM2Q13796 1616 aa20.11■□□□□ 0.81
RPUSD3-211ENST00000464783 EEA1Q15075 1411 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms