RNA–Protein interactions for RNA: ENST00000464750.5

U2AF1-206, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 966 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-206ENST00000464750 NISCHQ9Y2I1 1504 aa64.11■■■■■ 7.85
U2AF1-206ENST00000464750 CCDC180Q9P1Z9 1646 aa57.39■■■■■ 6.78
U2AF1-206ENST00000464750 ABCC9O60706 1549 aa56.74■■■■■ 6.67
U2AF1-206ENST00000464750 RB1CC1Q8TDY2 1594 aa54.3■■■■■ 6.28
U2AF1-206ENST00000464750 NACADO15069 1562 aa54.04■■■■■ 6.24
U2AF1-206ENST00000464750 DCAF8L2P0C7V8 631 aa53.76■■■■■ 6.2
U2AF1-206ENST00000464750 MYO15BQ96JP2 1530 aa53.47■■■■■ 6.15
U2AF1-206ENST00000464750 ZCCHC6Q5VYS8 1495 aaKnown RBP53.29■■■■■ 6.12
U2AF1-206ENST00000464750 UNC13AQ9UPW8 1703 aa53.16■■■■■ 6.1
U2AF1-206ENST00000464750 DCAF1Q9Y4B6 1507 aa53.01■■■■■ 6.08
U2AF1-206ENST00000464750 PABPN1Q86U42 306 aaKnown RBP eCLIP52.84■■■■■ 6.05
U2AF1-206ENST00000464750 BICRAQ9NZM4 1560 aa52.68■■■■■ 6.02
U2AF1-206ENST00000464750 DNAJC5BQ9UF47 199 aa52.61■■■■■ 6.01
U2AF1-206ENST00000464750 SCRIBQ14160 1630 aa52.31■■■■■ 5.96
U2AF1-206ENST00000464750 SHROOM4Q9ULL8 1493 aa52.05■■■■■ 5.92
U2AF1-206ENST00000464750 EIF4G1Q04637 1599 aaKnown RBP51.36■■■■■ 5.81
U2AF1-206ENST00000464750 CC2D2AQ9P2K1 1620 aa51.33■■■■■ 5.81
U2AF1-206ENST00000464750 CECR2Q9BXF3 1484 aa51.05■■■■■ 5.76
U2AF1-206ENST00000464750 SMARCA4P51532 1647 aa49.95■■■■■ 5.59
U2AF1-206ENST00000464750 NCAPD3P42695 1498 aa49.83■■■■■ 5.57
U2AF1-206ENST00000464750 ATAD2BQ9ULI0 1458 aa49.79■■■■■ 5.56
U2AF1-206ENST00000464750 BAZ1AQ9NRL2 1556 aaPredicted RBP49.76■■■■■ 5.56
U2AF1-206ENST00000464750 SMARCA2P51531 1590 aa49.72■■■■■ 5.55
U2AF1-206ENST00000464750 HMGXB3Q12766 1538 aa49.6■■■■■ 5.53
U2AF1-206ENST00000464750 PEG3Q9GZU2 1588 aa49.44■■■■■ 5.5
U2AF1-206ENST00000464750 MROH2BQ7Z745 1585 aa49.41■■■■■ 5.5
U2AF1-206ENST00000464750 BAZ1BQ9UIG0 1483 aaKnown RBP49.37■■■■■ 5.49
U2AF1-206ENST00000464750 ERCC6Q03468 1493 aa48.97■■■■■ 5.43
U2AF1-206ENST00000464750 NESP48681 1621 aa48.91■■■■■ 5.42
U2AF1-206ENST00000464750 WIZO95785 1651 aa48.88■■■■■ 5.42
U2AF1-206ENST00000464750 LAMC3Q9Y6N6 1575 aa48.69■■■■■ 5.39
U2AF1-206ENST00000464750 CUX2O14529 1486 aa48.68■■■■■ 5.38
U2AF1-206ENST00000464750 RSF1Q96T23 1441 aaPredicted RBP48.56■■■■■ 5.36
U2AF1-206ENST00000464750 KIF21AQ7Z4S6 1674 aa48.39■■■■■ 5.34
U2AF1-206ENST00000464750 THOC2Q8NI27 1593 aaKnown RBP48.38■■■■■ 5.33
U2AF1-206ENST00000464750 CADPSQ9ULU8 1353 aa48.34■■■■■ 5.33
U2AF1-206ENST00000464750 PDS5BQ9NTI5 1447 aa48.33■■■■■ 5.33
U2AF1-206ENST00000464750 TOP2AP11388 1531 aaKnown RBP48.32■■■■■ 5.33
U2AF1-206ENST00000464750 CFTRP13569 1480 aa47.93■■■■■ 5.26
U2AF1-206ENST00000464750 MRC2Q9UBG0 1479 aa47.92■■■■■ 5.26
U2AF1-206ENST00000464750 DNAJC5Q9H3Z4 198 aa47.9■■■■■ 5.26
U2AF1-206ENST00000464750 CEP164Q9UPV0 1460 aa47.86■■■■■ 5.25
U2AF1-206ENST00000464750 FANCD2Q9BXW9 1451 aa47.84■■■■■ 5.25
U2AF1-206ENST00000464750 WDR62O43379 1518 aa47.81■■■■■ 5.24
U2AF1-206ENST00000464750 CCDC88BA6NC98 1476 aa47.69■■■■■ 5.22
U2AF1-206ENST00000464750 PRDM2Q13029 1718 aa47.67■■■■■ 5.22
U2AF1-206ENST00000464750 URB2Q14146 1524 aaKnown RBP47.41■■■■■ 5.18
U2AF1-206ENST00000464750 TOPBP1Q92547 1522 aa47■■■■■ 5.12
U2AF1-206ENST00000464750 ABCC8Q09428 1581 aa46.92■■■■■ 5.1
U2AF1-206ENST00000464750 DNMBPQ6XZF7 1577 aa46.92■■■■■ 5.1
U2AF1-206ENST00000464750 IFT140Q96RY7 1462 aa46.86■■■■■ 5.09
U2AF1-206ENST00000464750 SUPT5HO00267 1087 aaKnown RBP46.78■■■■■ 5.08
U2AF1-206ENST00000464750 ZNF608Q9ULD9 1512 aaPredicted RBP46.73■■■■■ 5.07
U2AF1-206ENST00000464750 EIF4G3O43432 1585 aaKnown RBP46.58■■■■■ 5.05
U2AF1-206ENST00000464750 TARBP1Q13395 1621 aaKnown RBP46.57■■■■■ 5.05
U2AF1-206ENST00000464750 POLA1P09884 1462 aaPredicted RBP46.56■■■■■ 5.04
U2AF1-206ENST00000464750 OSCARQ8IYS5 282 aa46.45■■■■■ 5.03
U2AF1-206ENST00000464750 CUX1P39880 1505 aa46.41■■■■■ 5.02
U2AF1-206ENST00000464750 FGD5Q6ZNL6 1462 aa46.36■■■■■ 5.01
U2AF1-206ENST00000464750 RAD54L2Q9Y4B4 1467 aa46.36■■■■■ 5.01
U2AF1-206ENST00000464750 AQRO60306 1485 aaKnown RBP eCLIP46.34■■■■■ 5.01
U2AF1-206ENST00000464750 SOGA1O94964 1423 aa46.3■■■■■ 5
U2AF1-206ENST00000464750 WDR97A6NE52 1622 aa46.16■■■■■ 4.98
U2AF1-206ENST00000464750 CHD1O14646 1710 aa46.15■■■■■ 4.98
U2AF1-206ENST00000464750 TDRD9Q8NDG6 1382 aaKnown RBP46.13■■■■■ 4.98
U2AF1-206ENST00000464750 TRIM41Q8WV44 630 aa46.08■■■■■ 4.97
U2AF1-206ENST00000464750 SNAPC4Q5SXM2 1469 aa45.95■■■■■ 4.95
U2AF1-206ENST00000464750 RIMBP3CA6NJZ7 1639 aa45.93■■■■■ 4.94
U2AF1-206ENST00000464750 RIMBP3BA6NNM3 1639 aa45.93■■■■■ 4.94
U2AF1-206ENST00000464750 RIMBP3Q9UFD9 1639 aa45.93■■■■■ 4.94
U2AF1-206ENST00000464750 FBLN2P98095 1184 aa45.89■■■■■ 4.94
U2AF1-206ENST00000464750 GRIN2BQ13224 1484 aa45.88■■■■■ 4.94
U2AF1-206ENST00000464750 BIVM-ERCC5R4GMW8 1640 aa45.87■■■■■ 4.93
U2AF1-206ENST00000464750 ABCA10Q8WWZ4 1543 aa45.86■■■■■ 4.93
U2AF1-206ENST00000464750 PBRM1Q86U86 1689 aa45.85■■■■■ 4.93
U2AF1-206ENST00000464750 MAGI1Q96QZ7 1491 aaPredicted RBP45.84■■■■■ 4.93
U2AF1-206ENST00000464750 TOP2BQ02880 1626 aa45.84■■■■■ 4.93
U2AF1-206ENST00000464750 ARHGEF11O15085 1522 aa45.82■■■■■ 4.93
U2AF1-206ENST00000464750 WRNQ14191 1432 aaPredicted RBP eCLIP45.82■■■■■ 4.93
U2AF1-206ENST00000464750 SYNJ1O43426 1573 aa45.81■■■■■ 4.92
U2AF1-206ENST00000464750 ABCA5Q8WWZ7 1642 aa45.8■■■■■ 4.92
U2AF1-206ENST00000464750 GAPVD1Q14C86 1478 aa45.79■■■■■ 4.92
U2AF1-206ENST00000464750 SYNJ2O15056 1496 aa45.67■■■■■ 4.9
U2AF1-206ENST00000464750 CHMP7Q8WUX9 453 aaPredicted RBP45.64■■■■■ 4.9
U2AF1-206ENST00000464750 CLASP1Q7Z460 1538 aa45.58■■■■■ 4.89
U2AF1-206ENST00000464750 ADAMTS12P58397 1594 aa45.41■■■■■ 4.86
U2AF1-206ENST00000464750 ARAP1Q96P48 1450 aa45.41■■■■■ 4.86
U2AF1-206ENST00000464750 CYB5RLQ6IPT4 315 aa45.34■■■■■ 4.85
U2AF1-206ENST00000464750 ERICH3Q5RHP9 1530 aa45.31■■■■■ 4.84
U2AF1-206ENST00000464750 GRIN2AQ12879 1464 aa45.3■■■■■ 4.84
U2AF1-206ENST00000464750 FHAD1B1AJZ9 1412 aa45.23■■■■■ 4.83
U2AF1-206ENST00000464750 CEP170Q5SW79 1584 aa45.15■■■■■ 4.82
U2AF1-206ENST00000464750 NUP160Q12769 1436 aa45.12■■■■■ 4.81
U2AF1-206ENST00000464750 KIF27Q86VH2 1401 aa44.91■■■■■ 4.78
U2AF1-206ENST00000464750 SHROOM2Q13796 1616 aa44.9■■■■■ 4.78
U2AF1-206ENST00000464750 ERCC6L2Q5T890 1561 aa44.9■■■■■ 4.78
U2AF1-206ENST00000464750 CUL7Q14999 1698 aa44.81■■■■■ 4.76
U2AF1-206ENST00000464750 RUSC2Q8N2Y8 1516 aa44.77■■■■■ 4.76
U2AF1-206ENST00000464750 IGF1RP08069 1367 aa44.77■■■■■ 4.76
U2AF1-206ENST00000464750 TRHP20396 242 aaPredicted RBP44.66■■■■■ 4.74
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms