RNA–Protein interactions for RNA: ENST00000464605.1

UBA3-206, Transcript of ubiquitin like modifier activating enzyme 3, humanhuman

TSL 2

Gene UBA3, Length 431 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBA3-206ENST00000464605 NISCHQ9Y2I1 1504 aa54.49■■■■■ 6.31
UBA3-206ENST00000464605 CCDC180Q9P1Z9 1646 aa48.55■■■■■ 5.36
UBA3-206ENST00000464605 ABCC9O60706 1549 aa47.94■■■■■ 5.26
UBA3-206ENST00000464605 RB1CC1Q8TDY2 1594 aa45.77■■■■■ 4.92
UBA3-206ENST00000464605 NACADO15069 1562 aa45.67■■■■■ 4.9
UBA3-206ENST00000464605 DCAF8L2P0C7V8 631 aa45.51■■■■■ 4.88
UBA3-206ENST00000464605 MYO15BQ96JP2 1530 aa45.34■■■■■ 4.85
UBA3-206ENST00000464605 ZCCHC6Q5VYS8 1495 aaKnown RBP45.33■■■■■ 4.85
UBA3-206ENST00000464605 DCAF1Q9Y4B6 1507 aa45.06■■■■■ 4.8
UBA3-206ENST00000464605 UNC13AQ9UPW8 1703 aa44.92■■■■■ 4.78
UBA3-206ENST00000464605 DNAJC5BQ9UF47 199 aa44.87■■■■■ 4.77
UBA3-206ENST00000464605 PABPN1Q86U42 306 aaKnown RBP eCLIP44.69■■■■■ 4.74
UBA3-206ENST00000464605 BICRAQ9NZM4 1560 aa44.51■■■■■ 4.72
UBA3-206ENST00000464605 SCRIBQ14160 1630 aa44.25■■■■■ 4.67
UBA3-206ENST00000464605 SHROOM4Q9ULL8 1493 aa43.89■■■■■ 4.62
UBA3-206ENST00000464605 CC2D2AQ9P2K1 1620 aa43.3■■■■■ 4.52
UBA3-206ENST00000464605 EIF4G1Q04637 1599 aaKnown RBP43.29■■■■■ 4.52
UBA3-206ENST00000464605 CECR2Q9BXF3 1484 aa43.18■■■■■ 4.5
UBA3-206ENST00000464605 SMARCA4P51532 1647 aa42.34■■■■■ 4.37
UBA3-206ENST00000464605 BAZ1AQ9NRL2 1556 aaPredicted RBP42.21■■■■■ 4.35
UBA3-206ENST00000464605 NCAPD3P42695 1498 aa42.17■■■■■ 4.34
UBA3-206ENST00000464605 ATAD2BQ9ULI0 1458 aa42.16■■■■■ 4.34
UBA3-206ENST00000464605 SMARCA2P51531 1590 aa42.05■■■■■ 4.32
UBA3-206ENST00000464605 MROH2BQ7Z745 1585 aa42.01■■■■■ 4.32
UBA3-206ENST00000464605 PEG3Q9GZU2 1588 aa41.95■■■■■ 4.31
UBA3-206ENST00000464605 HMGXB3Q12766 1538 aa41.92■■■■■ 4.3
UBA3-206ENST00000464605 BAZ1BQ9UIG0 1483 aaKnown RBP41.74■■■■■ 4.27
UBA3-206ENST00000464605 WIZO95785 1651 aa41.56■■■■■ 4.24
UBA3-206ENST00000464605 RSF1Q96T23 1441 aaPredicted RBP41.42■■■■■ 4.22
UBA3-206ENST00000464605 ERCC6Q03468 1493 aa41.35■■■■■ 4.21
UBA3-206ENST00000464605 NESP48681 1621 aa41.26■■■■■ 4.2
UBA3-206ENST00000464605 CUX2O14529 1486 aa41.26■■■■■ 4.2
UBA3-206ENST00000464605 LAMC3Q9Y6N6 1575 aa41.08■■■■■ 4.17
UBA3-206ENST00000464605 TOP2AP11388 1531 aaKnown RBP41.04■■■■■ 4.16
UBA3-206ENST00000464605 DNAJC5Q9H3Z4 198 aa41.04■■■■■ 4.16
UBA3-206ENST00000464605 CADPSQ9ULU8 1353 aa40.9■■■■■ 4.14
UBA3-206ENST00000464605 KIF21AQ7Z4S6 1674 aa40.8■■■■■ 4.12
UBA3-206ENST00000464605 THOC2Q8NI27 1593 aaKnown RBP40.78■■■■■ 4.12
UBA3-206ENST00000464605 PDS5BQ9NTI5 1447 aa40.76■■■■■ 4.12
UBA3-206ENST00000464605 CFTRP13569 1480 aa40.63■■■■■ 4.09
UBA3-206ENST00000464605 CCDC88BA6NC98 1476 aa40.59■■■■■ 4.09
UBA3-206ENST00000464605 FANCD2Q9BXW9 1451 aa40.43■■■■■ 4.06
UBA3-206ENST00000464605 MRC2Q9UBG0 1479 aa40.4■■■■■ 4.06
UBA3-206ENST00000464605 PRDM2Q13029 1718 aa40.38■■■■■ 4.05
UBA3-206ENST00000464605 CEP164Q9UPV0 1460 aa40.38■■■■■ 4.05
UBA3-206ENST00000464605 WDR62O43379 1518 aa40.3■■■■■ 4.04
UBA3-206ENST00000464605 SUPT5HO00267 1087 aaKnown RBP40.1■■■■■ 4.01
UBA3-206ENST00000464605 URB2Q14146 1524 aaKnown RBP40.09■■■■■ 4.01
UBA3-206ENST00000464605 TOPBP1Q92547 1522 aa39.78■■■■□ 3.96
UBA3-206ENST00000464605 ABCC8Q09428 1581 aa39.71■■■■□ 3.95
UBA3-206ENST00000464605 DNMBPQ6XZF7 1577 aa39.7■■■■□ 3.95
UBA3-206ENST00000464605 IFT140Q96RY7 1462 aa39.55■■■■□ 3.92
UBA3-206ENST00000464605 ZNF608Q9ULD9 1512 aaPredicted RBP39.45■■■■□ 3.91
UBA3-206ENST00000464605 POLA1P09884 1462 aaPredicted RBP39.43■■■■□ 3.9
UBA3-206ENST00000464605 TARBP1Q13395 1621 aaKnown RBP39.42■■■■□ 3.9
UBA3-206ENST00000464605 CUX1P39880 1505 aa39.41■■■■□ 3.9
UBA3-206ENST00000464605 OSCARQ8IYS5 282 aa39.41■■■■□ 3.9
UBA3-206ENST00000464605 FGD5Q6ZNL6 1462 aa39.28■■■■□ 3.88
UBA3-206ENST00000464605 EIF4G3O43432 1585 aaKnown RBP39.27■■■■□ 3.88
UBA3-206ENST00000464605 RAD54L2Q9Y4B4 1467 aa39.27■■■■□ 3.88
UBA3-206ENST00000464605 TRIM41Q8WV44 630 aa39.25■■■■□ 3.87
UBA3-206ENST00000464605 SOGA1O94964 1423 aa39.23■■■■□ 3.87
UBA3-206ENST00000464605 AQRO60306 1485 aaKnown RBP eCLIP39.18■■■■□ 3.861e-9■■■■■ 37.7
UBA3-206ENST00000464605 TDRD9Q8NDG6 1382 aaKnown RBP39.05■■■■□ 3.84
UBA3-206ENST00000464605 WDR97A6NE52 1622 aa39.04■■■■□ 3.84
UBA3-206ENST00000464605 BIVM-ERCC5R4GMW8 1640 aa39.02■■■■□ 3.84
UBA3-206ENST00000464605 WRNQ14191 1432 aaPredicted RBP eCLIP39■■■■□ 3.83
UBA3-206ENST00000464605 TOP2BQ02880 1626 aa39■■■■□ 3.83
UBA3-206ENST00000464605 SYNJ1O43426 1573 aa38.99■■■■□ 3.83
UBA3-206ENST00000464605 ABCA10Q8WWZ4 1543 aa38.9■■■■□ 3.82
UBA3-206ENST00000464605 CHD1O14646 1710 aa38.88■■■■□ 3.81
UBA3-206ENST00000464605 RIMBP3CA6NJZ7 1639 aa38.81■■■■□ 3.8
UBA3-206ENST00000464605 RIMBP3BA6NNM3 1639 aa38.81■■■■□ 3.8
UBA3-206ENST00000464605 RIMBP3Q9UFD9 1639 aa38.81■■■■□ 3.8
UBA3-206ENST00000464605 ABCA5Q8WWZ7 1642 aa38.79■■■■□ 3.8
UBA3-206ENST00000464605 GRIN2BQ13224 1484 aa38.79■■■■□ 3.8
UBA3-206ENST00000464605 SNAPC4Q5SXM2 1469 aa38.79■■■■□ 3.8
UBA3-206ENST00000464605 GAPVD1Q14C86 1478 aa38.78■■■■□ 3.8
UBA3-206ENST00000464605 PBRM1Q86U86 1689 aa38.78■■■■□ 3.8
UBA3-206ENST00000464605 ARHGEF11O15085 1522 aa38.76■■■■□ 3.8
UBA3-206ENST00000464605 FBLN2P98095 1184 aa38.72■■■■□ 3.79
UBA3-206ENST00000464605 MAGI1Q96QZ7 1491 aaPredicted RBP38.71■■■■□ 3.79
UBA3-206ENST00000464605 SYNJ2O15056 1496 aa38.57■■■■□ 3.76
UBA3-206ENST00000464605 CHMP7Q8WUX9 453 aaPredicted RBP38.54■■■■□ 3.76
UBA3-206ENST00000464605 CYB5RLQ6IPT4 315 aa38.47■■■■□ 3.75
UBA3-206ENST00000464605 ADAMTS12P58397 1594 aa38.42■■■■□ 3.74
UBA3-206ENST00000464605 ERICH3Q5RHP9 1530 aa38.42■■■■□ 3.74
UBA3-206ENST00000464605 CLASP1Q7Z460 1538 aa38.42■■■■□ 3.74
UBA3-206ENST00000464605 ARAP1Q96P48 1450 aa38.41■■■■□ 3.74
UBA3-206ENST00000464605 GRIN2AQ12879 1464 aa38.31■■■■□ 3.72
UBA3-206ENST00000464605 FHAD1B1AJZ9 1412 aa38.3■■■■□ 3.72
UBA3-206ENST00000464605 KIF27Q86VH2 1401 aa38.19■■■■□ 3.7
UBA3-206ENST00000464605 CEP170Q5SW79 1584 aa38.18■■■■□ 3.7
UBA3-206ENST00000464605 NUP160Q12769 1436 aa38.17■■■■□ 3.7
UBA3-206ENST00000464605 IGF1RP08069 1367 aa38.14■■■■□ 3.7
UBA3-206ENST00000464605 CUL7Q14999 1698 aa38.01■■■■□ 3.68
UBA3-206ENST00000464605 SHROOM2Q13796 1616 aa37.95■■■■□ 3.67
UBA3-206ENST00000464605 TRHP20396 242 aaPredicted RBP37.93■■■■□ 3.66
UBA3-206ENST00000464605 ERCC6L2Q5T890 1561 aa37.91■■■■□ 3.66
UBA3-206ENST00000464605 RUSC2Q8N2Y8 1516 aa37.89■■■■□ 3.66
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms