RNA–Protein interactions for RNA: ENST00000464408.3

ALMS1-202, Transcript of ALMS1, centrosome and basal body associated protein, humanhuman

TSL 5

Gene ALMS1, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1-202ENST00000464408 NISCHQ9Y2I1 1504 aa36.39■■■■□ 3.42
ALMS1-202ENST00000464408 CCDC180Q9P1Z9 1646 aa32.61■■■□□ 2.81
ALMS1-202ENST00000464408 ABCC9O60706 1549 aa32.56■■■□□ 2.8
ALMS1-202ENST00000464408 RB1CC1Q8TDY2 1594 aa30.96■■■□□ 2.55
ALMS1-202ENST00000464408 NACADO15069 1562 aa30.76■■■□□ 2.52
ALMS1-202ENST00000464408 DCAF8L2P0C7V8 631 aa30.65■■■□□ 2.5
ALMS1-202ENST00000464408 DNAJC5BQ9UF47 199 aa30.47■■■□□ 2.47
ALMS1-202ENST00000464408 UNC13AQ9UPW8 1703 aa30.41■■■□□ 2.46
ALMS1-202ENST00000464408 MYO15BQ96JP2 1530 aa30.34■■■□□ 2.45
ALMS1-202ENST00000464408 PABPN1Q86U42 306 aaKnown RBP eCLIP30.32■■■□□ 2.44
ALMS1-202ENST00000464408 ZCCHC6Q5VYS8 1495 aaKnown RBP30.19■■■□□ 2.42
ALMS1-202ENST00000464408 BICRAQ9NZM4 1560 aa30.15■■■□□ 2.42
ALMS1-202ENST00000464408 DCAF1Q9Y4B6 1507 aa30.01■■■□□ 2.4
ALMS1-202ENST00000464408 SCRIBQ14160 1630 aa29.79■■■□□ 2.36
ALMS1-202ENST00000464408 SHROOM4Q9ULL8 1493 aa29.6■■■□□ 2.33
ALMS1-202ENST00000464408 CC2D2AQ9P2K1 1620 aa29.42■■■□□ 2.3
ALMS1-202ENST00000464408 EIF4G1Q04637 1599 aaKnown RBP29.36■■■□□ 2.29
ALMS1-202ENST00000464408 CECR2Q9BXF3 1484 aa29.28■■■□□ 2.28
ALMS1-202ENST00000464408 SMARCA4P51532 1647 aa28.4■■■□□ 2.14
ALMS1-202ENST00000464408 NCAPD3P42695 1498 aa28.4■■■□□ 2.14
ALMS1-202ENST00000464408 ATAD2BQ9ULI0 1458 aa28.37■■■□□ 2.13
ALMS1-202ENST00000464408 SMARCA2P51531 1590 aa28.25■■■□□ 2.11
ALMS1-202ENST00000464408 HMGXB3Q12766 1538 aa28.22■■■□□ 2.11
ALMS1-202ENST00000464408 BAZ1AQ9NRL2 1556 aaPredicted RBP28.21■■■□□ 2.11
ALMS1-202ENST00000464408 MROH2BQ7Z745 1585 aa28.09■■■□□ 2.09
ALMS1-202ENST00000464408 BAZ1BQ9UIG0 1483 aaKnown RBP28.08■■■□□ 2.09
ALMS1-202ENST00000464408 PEG3Q9GZU2 1588 aa28.08■■■□□ 2.09
ALMS1-202ENST00000464408 ERCC6Q03468 1493 aa28.04■■■□□ 2.08
ALMS1-202ENST00000464408 NESP48681 1621 aa28.03■■■□□ 2.08
ALMS1-202ENST00000464408 CUX2O14529 1486 aa27.93■■■□□ 2.06
ALMS1-202ENST00000464408 DNAJC5Q9H3Z4 198 aa27.79■■■□□ 2.04
ALMS1-202ENST00000464408 WIZO95785 1651 aa27.78■■■□□ 2.04
ALMS1-202ENST00000464408 LAMC3Q9Y6N6 1575 aa27.75■■■□□ 2.03
ALMS1-202ENST00000464408 THOC2Q8NI27 1593 aaKnown RBP27.71■■■□□ 2.03
ALMS1-202ENST00000464408 KIF21AQ7Z4S6 1674 aa27.69■■■□□ 2.02
ALMS1-202ENST00000464408 PDS5BQ9NTI5 1447 aa27.55■■■□□ 2
ALMS1-202ENST00000464408 CADPSQ9ULU8 1353 aa27.54■■■□□ 2
ALMS1-202ENST00000464408 RSF1Q96T23 1441 aaPredicted RBP27.51■■□□□ 1.99
ALMS1-202ENST00000464408 TOP2AP11388 1531 aaKnown RBP27.38■■□□□ 1.97
ALMS1-202ENST00000464408 MRC2Q9UBG0 1479 aa27.37■■□□□ 1.97
ALMS1-202ENST00000464408 WDR62O43379 1518 aa27.31■■□□□ 1.96
ALMS1-202ENST00000464408 CFTRP13569 1480 aa27.27■■□□□ 1.96
ALMS1-202ENST00000464408 CEP164Q9UPV0 1460 aa27.27■■□□□ 1.96
ALMS1-202ENST00000464408 FANCD2Q9BXW9 1451 aa27.26■■□□□ 1.95
ALMS1-202ENST00000464408 CCDC88BA6NC98 1476 aa27.08■■□□□ 1.93
ALMS1-202ENST00000464408 PRDM2Q13029 1718 aa27.08■■□□□ 1.93
ALMS1-202ENST00000464408 URB2Q14146 1524 aaKnown RBP27.08■■□□□ 1.93
ALMS1-202ENST00000464408 TOPBP1Q92547 1522 aa26.77■■□□□ 1.88
ALMS1-202ENST00000464408 ZNF608Q9ULD9 1512 aaPredicted RBP26.74■■□□□ 1.87
ALMS1-202ENST00000464408 IFT140Q96RY7 1462 aa26.7■■□□□ 1.87
ALMS1-202ENST00000464408 DNMBPQ6XZF7 1577 aa26.68■■□□□ 1.86
ALMS1-202ENST00000464408 TRIM41Q8WV44 630 aa26.68■■□□□ 1.86
ALMS1-202ENST00000464408 OSCARQ8IYS5 282 aa26.64■■□□□ 1.86
ALMS1-202ENST00000464408 ABCC8Q09428 1581 aa26.62■■□□□ 1.85
ALMS1-202ENST00000464408 EIF4G3O43432 1585 aaKnown RBP26.59■■□□□ 1.85
ALMS1-202ENST00000464408 TARBP1Q13395 1621 aaKnown RBP26.56■■□□□ 1.84
ALMS1-202ENST00000464408 POLA1P09884 1462 aaPredicted RBP26.51■■□□□ 1.83
ALMS1-202ENST00000464408 AQRO60306 1485 aaKnown RBP eCLIP26.49■■□□□ 1.832e-9■■■□□ 14.9
ALMS1-202ENST00000464408 RAD54L2Q9Y4B4 1467 aa26.44■■□□□ 1.82
ALMS1-202ENST00000464408 RIMBP3CA6NJZ7 1639 aa26.4■■□□□ 1.82
ALMS1-202ENST00000464408 RIMBP3BA6NNM3 1639 aa26.4■■□□□ 1.82
ALMS1-202ENST00000464408 RIMBP3Q9UFD9 1639 aa26.4■■□□□ 1.82
ALMS1-202ENST00000464408 CHD1O14646 1710 aa26.4■■□□□ 1.82
ALMS1-202ENST00000464408 CUX1P39880 1505 aa26.39■■□□□ 1.81
ALMS1-202ENST00000464408 SUPT5HO00267 1087 aaKnown RBP26.37■■□□□ 1.81
ALMS1-202ENST00000464408 FGD5Q6ZNL6 1462 aa26.36■■□□□ 1.81
ALMS1-202ENST00000464408 SOGA1O94964 1423 aa26.35■■□□□ 1.81
ALMS1-202ENST00000464408 TDRD9Q8NDG6 1382 aaKnown RBP26.33■■□□□ 1.8
ALMS1-202ENST00000464408 ARHGEF11O15085 1522 aa26.3■■□□□ 1.8
ALMS1-202ENST00000464408 FBLN2P98095 1184 aa26.24■■□□□ 1.79
ALMS1-202ENST00000464408 WDR97A6NE52 1622 aa26.22■■□□□ 1.79
ALMS1-202ENST00000464408 SNAPC4Q5SXM2 1469 aa26.21■■□□□ 1.79
ALMS1-202ENST00000464408 GRIN2BQ13224 1484 aa26.11■■□□□ 1.77
ALMS1-202ENST00000464408 PBRM1Q86U86 1689 aa26.1■■□□□ 1.77
ALMS1-202ENST00000464408 MAGI1Q96QZ7 1491 aaPredicted RBP26.09■■□□□ 1.77
ALMS1-202ENST00000464408 ARAP1Q96P48 1450 aa26.07■■□□□ 1.76
ALMS1-202ENST00000464408 CYB5RLQ6IPT4 315 aa26.06■■□□□ 1.76
ALMS1-202ENST00000464408 CLASP1Q7Z460 1538 aa26.05■■□□□ 1.76
ALMS1-202ENST00000464408 GAPVD1Q14C86 1478 aa26.04■■□□□ 1.76
ALMS1-202ENST00000464408 ABCA5Q8WWZ7 1642 aa26.04■■□□□ 1.76
ALMS1-202ENST00000464408 ABCA10Q8WWZ4 1543 aa26.04■■□□□ 1.76
ALMS1-202ENST00000464408 CHMP7Q8WUX9 453 aaPredicted RBP26.03■■□□□ 1.76
ALMS1-202ENST00000464408 SYNJ2O15056 1496 aa26.02■■□□□ 1.76
ALMS1-202ENST00000464408 SYNJ1O43426 1573 aa25.99■■□□□ 1.75
ALMS1-202ENST00000464408 BIVM-ERCC5R4GMW8 1640 aa25.98■■□□□ 1.75
ALMS1-202ENST00000464408 TOP2BQ02880 1626 aa25.96■■□□□ 1.75
ALMS1-202ENST00000464408 WRNQ14191 1432 aaPredicted RBP eCLIP25.92■■□□□ 1.74
ALMS1-202ENST00000464408 ADAMTS12P58397 1594 aa25.83■■□□□ 1.73
ALMS1-202ENST00000464408 GRIN2AQ12879 1464 aa25.79■■□□□ 1.72
ALMS1-202ENST00000464408 CEP170Q5SW79 1584 aa25.75■■□□□ 1.71
ALMS1-202ENST00000464408 ERCC6L2Q5T890 1561 aa25.73■■□□□ 1.71
ALMS1-202ENST00000464408 TRHP20396 242 aaPredicted RBP25.72■■□□□ 1.71
ALMS1-202ENST00000464408 NUP160Q12769 1436 aa25.71■■□□□ 1.71
ALMS1-202ENST00000464408 ERICH3Q5RHP9 1530 aa25.7■■□□□ 1.7
ALMS1-202ENST00000464408 FHAD1B1AJZ9 1412 aa25.7■■□□□ 1.7
ALMS1-202ENST00000464408 SHROOM2Q13796 1616 aa25.61■■□□□ 1.69
ALMS1-202ENST00000464408 RUSC2Q8N2Y8 1516 aa25.47■■□□□ 1.67
ALMS1-202ENST00000464408 PRG4Q92954 1404 aaPredicted RBP25.45■■□□□ 1.66
ALMS1-202ENST00000464408 IGF1RP08069 1367 aa25.41■■□□□ 1.66
ALMS1-202ENST00000464408 KIF27Q86VH2 1401 aa25.39■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms