RNA–Protein interactions for RNA: ENST00000464088.5

CD58-204, Transcript of CD58 molecule, humanhuman

TSL 1 (best)

Gene CD58, Length 874 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD58-204ENST00000464088 NISCHQ9Y2I1 1504 aa50.66■■■■■ 5.7
CD58-204ENST00000464088 ABCC9O60706 1549 aa46.26■■■■■ 5
CD58-204ENST00000464088 CCDC180Q9P1Z9 1646 aa45.79■■■■■ 4.92
CD58-204ENST00000464088 DNAJC5BQ9UF47 199 aa44■■■■■ 4.63
CD58-204ENST00000464088 RB1CC1Q8TDY2 1594 aa43.84■■■■■ 4.61
CD58-204ENST00000464088 NACADO15069 1562 aa43.41■■■■■ 4.54
CD58-204ENST00000464088 PABPN1Q86U42 306 aaKnown RBP eCLIP42.94■■■■■ 4.46
CD58-204ENST00000464088 UNC13AQ9UPW8 1703 aa42.9■■■■■ 4.46
CD58-204ENST00000464088 DCAF8L2P0C7V8 631 aa42.85■■■■■ 4.45
CD58-204ENST00000464088 MYO15BQ96JP2 1530 aa42.68■■■■■ 4.42
CD58-204ENST00000464088 BICRAQ9NZM4 1560 aa42.61■■■■■ 4.41
CD58-204ENST00000464088 SHROOM4Q9ULL8 1493 aa42.03■■■■■ 4.32
CD58-204ENST00000464088 DCAF1Q9Y4B6 1507 aa41.88■■■■■ 4.29
CD58-204ENST00000464088 ZCCHC6Q5VYS8 1495 aaKnown RBP41.85■■■■■ 4.29
CD58-204ENST00000464088 CC2D2AQ9P2K1 1620 aa41.83■■■■■ 4.29
CD58-204ENST00000464088 CECR2Q9BXF3 1484 aa41.78■■■■■ 4.28
CD58-204ENST00000464088 EIF4G1Q04637 1599 aaKnown RBP41.59■■■■■ 4.25
CD58-204ENST00000464088 SCRIBQ14160 1630 aa41.56■■■■■ 4.24
CD58-204ENST00000464088 DNAJC5Q9H3Z4 198 aa40.9■■■■■ 4.14
CD58-204ENST00000464088 CUX2O14529 1486 aa40.22■■■■■ 4.03
CD58-204ENST00000464088 NCAPD3P42695 1498 aa40.09■■■■■ 4.01
CD58-204ENST00000464088 ERCC6Q03468 1493 aa39.98■■■■□ 3.99
CD58-204ENST00000464088 ATAD2BQ9ULI0 1458 aa39.84■■■■□ 3.97
CD58-204ENST00000464088 HMGXB3Q12766 1538 aa39.74■■■■□ 3.95
CD58-204ENST00000464088 SMARCA2P51531 1590 aa39.71■■■■□ 3.95
CD58-204ENST00000464088 SMARCA4P51532 1647 aa39.65■■■■□ 3.94
CD58-204ENST00000464088 NESP48681 1621 aa39.58■■■■□ 3.93
CD58-204ENST00000464088 BAZ1BQ9UIG0 1483 aaKnown RBP39.39■■■■□ 3.9
CD58-204ENST00000464088 THOC2Q8NI27 1593 aaKnown RBP39.38■■■■□ 3.89
CD58-204ENST00000464088 BAZ1AQ9NRL2 1556 aaPredicted RBP39.37■■■■□ 3.89
CD58-204ENST00000464088 PEG3Q9GZU2 1588 aa39.33■■■■□ 3.89
CD58-204ENST00000464088 LAMC3Q9Y6N6 1575 aa39.29■■■■□ 3.88
CD58-204ENST00000464088 KIF21AQ7Z4S6 1674 aa39.09■■■■□ 3.85
CD58-204ENST00000464088 PDS5BQ9NTI5 1447 aa39.04■■■■□ 3.84
CD58-204ENST00000464088 MROH2BQ7Z745 1585 aa39■■■■□ 3.83
CD58-204ENST00000464088 CADPSQ9ULU8 1353 aa38.81■■■■□ 3.8
CD58-204ENST00000464088 MRC2Q9UBG0 1479 aa38.73■■■■□ 3.79
CD58-204ENST00000464088 TRIM41Q8WV44 630 aa38.7■■■■□ 3.79
CD58-204ENST00000464088 WDR62O43379 1518 aa38.69■■■■□ 3.78
CD58-204ENST00000464088 WIZO95785 1651 aa38.5■■■■□ 3.75
CD58-204ENST00000464088 CEP164Q9UPV0 1460 aa38.44■■■■□ 3.74
CD58-204ENST00000464088 FANCD2Q9BXW9 1451 aa38.35■■■■□ 3.73
CD58-204ENST00000464088 RSF1Q96T23 1441 aaPredicted RBP38.28■■■■□ 3.72
CD58-204ENST00000464088 CFTRP13569 1480 aa38.25■■■■□ 3.71
CD58-204ENST00000464088 OSCARQ8IYS5 282 aa38.23■■■■□ 3.71
CD58-204ENST00000464088 URB2Q14146 1524 aaKnown RBP38.08■■■■□ 3.69
CD58-204ENST00000464088 TOP2AP11388 1531 aaKnown RBP37.99■■■■□ 3.67
CD58-204ENST00000464088 PRDM2Q13029 1718 aa37.87■■■■□ 3.65
CD58-204ENST00000464088 RIMBP3CA6NJZ7 1639 aa37.83■■■■□ 3.65
CD58-204ENST00000464088 RIMBP3BA6NNM3 1639 aa37.83■■■■□ 3.65
CD58-204ENST00000464088 RIMBP3Q9UFD9 1639 aa37.83■■■■□ 3.65
CD58-204ENST00000464088 IFT140Q96RY7 1462 aa37.71■■■■□ 3.63
CD58-204ENST00000464088 ZNF608Q9ULD9 1512 aaPredicted RBP37.69■■■■□ 3.62
CD58-204ENST00000464088 ARHGEF11O15085 1522 aa37.63■■■■□ 3.61
CD58-204ENST00000464088 TOPBP1Q92547 1522 aa37.56■■■■□ 3.6
CD58-204ENST00000464088 CCDC88BA6NC98 1476 aa37.55■■■■□ 3.6
CD58-204ENST00000464088 ABCC8Q09428 1581 aa37.48■■■■□ 3.59
CD58-204ENST00000464088 EIF4G3O43432 1585 aaKnown RBP37.47■■■■□ 3.59
CD58-204ENST00000464088 SUPT5HO00267 1087 aaKnown RBP37.47■■■■□ 3.59
CD58-204ENST00000464088 DNMBPQ6XZF7 1577 aa37.38■■■■□ 3.58
CD58-204ENST00000464088 CYB5RLQ6IPT4 315 aa37.33■■■■□ 3.57
CD58-204ENST00000464088 CHD1O14646 1710 aa37.33■■■■□ 3.57
CD58-204ENST00000464088 TARBP1Q13395 1621 aaKnown RBP37.32■■■■□ 3.56
CD58-204ENST00000464088 AQRO60306 1485 aaKnown RBP eCLIP37.26■■■■□ 3.561e-7■■■□□ 14.7
CD58-204ENST00000464088 ARAP1Q96P48 1450 aa37.22■■■■□ 3.55
CD58-204ENST00000464088 POLA1P09884 1462 aaPredicted RBP37.13■■■■□ 3.54
CD58-204ENST00000464088 TRHP20396 242 aaPredicted RBP37.08■■■■□ 3.53
CD58-204ENST00000464088 FBLN2P98095 1184 aa37.06■■■■□ 3.52
CD58-204ENST00000464088 RAD54L2Q9Y4B4 1467 aa36.97■■■■□ 3.51
CD58-204ENST00000464088 SOGA1O94964 1423 aa36.93■■■■□ 3.5
CD58-204ENST00000464088 WDR97A6NE52 1622 aa36.93■■■■□ 3.5
CD58-204ENST00000464088 TDRD9Q8NDG6 1382 aaKnown RBP36.91■■■■□ 3.5
CD58-204ENST00000464088 CLASP1Q7Z460 1538 aa36.91■■■■□ 3.5
CD58-204ENST00000464088 SNAPC4Q5SXM2 1469 aa36.87■■■■□ 3.49
CD58-204ENST00000464088 SYNJ1O43426 1573 aa36.8■■■■□ 3.48
CD58-204ENST00000464088 FGD5Q6ZNL6 1462 aa36.8■■■■□ 3.48
CD58-204ENST00000464088 MAGI1Q96QZ7 1491 aaPredicted RBP36.8■■■■□ 3.48
CD58-204ENST00000464088 CHMP7Q8WUX9 453 aaPredicted RBP36.74■■■■□ 3.47
CD58-204ENST00000464088 GRIN2BQ13224 1484 aa36.7■■■■□ 3.47
CD58-204ENST00000464088 CUX1P39880 1505 aa36.68■■■■□ 3.46
CD58-204ENST00000464088 SYNJ2O15056 1496 aa36.67■■■■□ 3.46
CD58-204ENST00000464088 PBRM1Q86U86 1689 aa36.54■■■■□ 3.44
CD58-204ENST00000464088 GAPVD1Q14C86 1478 aa36.5■■■■□ 3.43
CD58-204ENST00000464088 AEBP2Q6ZN18 517 aaPredicted RBP36.46■■■■□ 3.43
CD58-204ENST00000464088 ABCA5Q8WWZ7 1642 aa36.4■■■■□ 3.42
CD58-204ENST00000464088 ABCA10Q8WWZ4 1543 aa36.39■■■■□ 3.42
CD58-204ENST00000464088 GRIN2AQ12879 1464 aa36.24■■■■□ 3.39
CD58-204ENST00000464088 ERCC6L2Q5T890 1561 aa36.23■■■■□ 3.39
CD58-204ENST00000464088 NUP160Q12769 1436 aa36.17■■■■□ 3.38
CD58-204ENST00000464088 CEP170Q5SW79 1584 aa36.15■■■■□ 3.38
CD58-204ENST00000464088 ADAMTS12P58397 1594 aa36.15■■■■□ 3.38
CD58-204ENST00000464088 SHROOM2Q13796 1616 aa36.12■■■■□ 3.37
CD58-204ENST00000464088 WRNQ14191 1432 aaPredicted RBP eCLIP36.08■■■■□ 3.37
CD58-204ENST00000464088 FHAD1B1AJZ9 1412 aa36■■■■□ 3.35
CD58-204ENST00000464088 BIVM-ERCC5R4GMW8 1640 aa35.99■■■■□ 3.35
CD58-204ENST00000464088 TOP2BQ02880 1626 aa35.97■■■■□ 3.35
CD58-204ENST00000464088 KIF13AQ9H1H9 1805 aa35.97■■■■□ 3.35
CD58-204ENST00000464088 ERICH3Q5RHP9 1530 aa35.93■■■■□ 3.34
CD58-204ENST00000464088 PRG4Q92954 1404 aaPredicted RBP35.82■■■■□ 3.32
CD58-204ENST00000464088 JPH4Q96JJ6 628 aa35.75■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms