RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 NISCHQ9Y2I1 1504 aa35.77■■■■□ 3.32
SNRNP40-203ENST00000463988 CCDC180Q9P1Z9 1646 aa32.02■■■□□ 2.72
SNRNP40-203ENST00000463988 ABCC9O60706 1549 aa31.8■■■□□ 2.68
SNRNP40-203ENST00000463988 RB1CC1Q8TDY2 1594 aa30.41■■■□□ 2.46
SNRNP40-203ENST00000463988 NACADO15069 1562 aa30.26■■■□□ 2.43
SNRNP40-203ENST00000463988 DCAF8L2P0C7V8 631 aa30.06■■■□□ 2.4
SNRNP40-203ENST00000463988 MYO15BQ96JP2 1530 aa29.96■■■□□ 2.39
SNRNP40-203ENST00000463988 DNAJC5BQ9UF47 199 aa29.7■■■□□ 2.35
SNRNP40-203ENST00000463988 ZCCHC6Q5VYS8 1495 aaKnown RBP29.68■■■□□ 2.34
SNRNP40-203ENST00000463988 PABPN1Q86U42 306 aaKnown RBP eCLIP29.64■■■□□ 2.34
SNRNP40-203ENST00000463988 UNC13AQ9UPW8 1703 aa29.63■■■□□ 2.33
SNRNP40-203ENST00000463988 DCAF1Q9Y4B6 1507 aa29.61■■■□□ 2.33
SNRNP40-203ENST00000463988 BICRAQ9NZM4 1560 aa29.48■■■□□ 2.31
SNRNP40-203ENST00000463988 SHROOM4Q9ULL8 1493 aa29.21■■■□□ 2.27
SNRNP40-203ENST00000463988 SCRIBQ14160 1630 aa29.12■■■□□ 2.25
SNRNP40-203ENST00000463988 CC2D2AQ9P2K1 1620 aa28.76■■■□□ 2.19
SNRNP40-203ENST00000463988 EIF4G1Q04637 1599 aaKnown RBP28.75■■■□□ 2.19
SNRNP40-203ENST00000463988 CECR2Q9BXF3 1484 aa28.67■■■□□ 2.18
SNRNP40-203ENST00000463988 NCAPD3P42695 1498 aa27.95■■■□□ 2.07
SNRNP40-203ENST00000463988 ATAD2BQ9ULI0 1458 aa27.86■■■□□ 2.05
SNRNP40-203ENST00000463988 SMARCA4P51532 1647 aa27.84■■■□□ 2.05
SNRNP40-203ENST00000463988 SMARCA2P51531 1590 aa27.8■■■□□ 2.04
SNRNP40-203ENST00000463988 BAZ1AQ9NRL2 1556 aaPredicted RBP27.76■■■□□ 2.03
SNRNP40-203ENST00000463988 HMGXB3Q12766 1538 aa27.73■■■□□ 2.03
SNRNP40-203ENST00000463988 PEG3Q9GZU2 1588 aa27.62■■■□□ 2.01
SNRNP40-203ENST00000463988 BAZ1BQ9UIG0 1483 aaKnown RBP27.58■■■□□ 2.01
SNRNP40-203ENST00000463988 MROH2BQ7Z745 1585 aa27.53■■■□□ 2
SNRNP40-203ENST00000463988 ERCC6Q03468 1493 aa27.47■■□□□ 1.99
SNRNP40-203ENST00000463988 CUX2O14529 1486 aa27.42■■□□□ 1.98
SNRNP40-203ENST00000463988 NESP48681 1621 aa27.37■■□□□ 1.97
SNRNP40-203ENST00000463988 LAMC3Q9Y6N6 1575 aa27.26■■□□□ 1.95
SNRNP40-203ENST00000463988 DNAJC5Q9H3Z4 198 aa27.21■■□□□ 1.95
SNRNP40-203ENST00000463988 WIZO95785 1651 aa27.17■■□□□ 1.94
SNRNP40-203ENST00000463988 PDS5BQ9NTI5 1447 aa27.12■■□□□ 1.93
SNRNP40-203ENST00000463988 CADPSQ9ULU8 1353 aa27.09■■□□□ 1.93
SNRNP40-203ENST00000463988 THOC2Q8NI27 1593 aaKnown RBP27.07■■□□□ 1.92
SNRNP40-203ENST00000463988 RSF1Q96T23 1441 aaPredicted RBP27.06■■□□□ 1.92
SNRNP40-203ENST00000463988 KIF21AQ7Z4S6 1674 aa27■■□□□ 1.91
SNRNP40-203ENST00000463988 TOP2AP11388 1531 aaKnown RBP26.9■■□□□ 1.9
SNRNP40-203ENST00000463988 MRC2Q9UBG0 1479 aa26.85■■□□□ 1.89
SNRNP40-203ENST00000463988 CFTRP13569 1480 aa26.82■■□□□ 1.88
SNRNP40-203ENST00000463988 WDR62O43379 1518 aa26.77■■□□□ 1.88
SNRNP40-203ENST00000463988 CEP164Q9UPV0 1460 aa26.76■■□□□ 1.87
SNRNP40-203ENST00000463988 FANCD2Q9BXW9 1451 aa26.75■■□□□ 1.87
SNRNP40-203ENST00000463988 CCDC88BA6NC98 1476 aa26.59■■□□□ 1.85
SNRNP40-203ENST00000463988 PRDM2Q13029 1718 aa26.51■■□□□ 1.83
SNRNP40-203ENST00000463988 URB2Q14146 1524 aaKnown RBP26.5■■□□□ 1.83
SNRNP40-203ENST00000463988 ABCC8Q09428 1581 aa26.29■■□□□ 1.8
SNRNP40-203ENST00000463988 TOPBP1Q92547 1522 aa26.27■■□□□ 1.8
SNRNP40-203ENST00000463988 IFT140Q96RY7 1462 aa26.25■■□□□ 1.79
SNRNP40-203ENST00000463988 OSCARQ8IYS5 282 aa26.19■■□□□ 1.78
SNRNP40-203ENST00000463988 DNMBPQ6XZF7 1577 aa26.19■■□□□ 1.78
SNRNP40-203ENST00000463988 ZNF608Q9ULD9 1512 aaPredicted RBP26.14■■□□□ 1.77
SNRNP40-203ENST00000463988 TARBP1Q13395 1621 aaKnown RBP26.02■■□□□ 1.76
SNRNP40-203ENST00000463988 POLA1P09884 1462 aaPredicted RBP26.01■■□□□ 1.75
SNRNP40-203ENST00000463988 TRIM41Q8WV44 630 aa26■■□□□ 1.75
SNRNP40-203ENST00000463988 EIF4G3O43432 1585 aaKnown RBP25.99■■□□□ 1.75
SNRNP40-203ENST00000463988 AQRO60306 1485 aaKnown RBP eCLIP25.93■■□□□ 1.742e-8■■■■□ 22.5
SNRNP40-203ENST00000463988 SUPT5HO00267 1087 aaKnown RBP25.92■■□□□ 1.74
SNRNP40-203ENST00000463988 SOGA1O94964 1423 aa25.9■■□□□ 1.74
SNRNP40-203ENST00000463988 RAD54L2Q9Y4B4 1467 aa25.88■■□□□ 1.73
SNRNP40-203ENST00000463988 CUX1P39880 1505 aa25.86■■□□□ 1.73
SNRNP40-203ENST00000463988 FGD5Q6ZNL6 1462 aa25.85■■□□□ 1.73
SNRNP40-203ENST00000463988 WDR97A6NE52 1622 aa25.82■■□□□ 1.72
SNRNP40-203ENST00000463988 TDRD9Q8NDG6 1382 aaKnown RBP25.81■■□□□ 1.72
SNRNP40-203ENST00000463988 RIMBP3CA6NJZ7 1639 aa25.76■■□□□ 1.71
SNRNP40-203ENST00000463988 RIMBP3BA6NNM3 1639 aa25.76■■□□□ 1.71
SNRNP40-203ENST00000463988 RIMBP3Q9UFD9 1639 aa25.76■■□□□ 1.71
SNRNP40-203ENST00000463988 CHD1O14646 1710 aa25.74■■□□□ 1.71
SNRNP40-203ENST00000463988 ARHGEF11O15085 1522 aa25.73■■□□□ 1.71
SNRNP40-203ENST00000463988 FBLN2P98095 1184 aa25.72■■□□□ 1.71
SNRNP40-203ENST00000463988 GRIN2BQ13224 1484 aa25.67■■□□□ 1.7
SNRNP40-203ENST00000463988 SNAPC4Q5SXM2 1469 aa25.67■■□□□ 1.7
SNRNP40-203ENST00000463988 MAGI1Q96QZ7 1491 aaPredicted RBP25.66■■□□□ 1.7
SNRNP40-203ENST00000463988 ABCA10Q8WWZ4 1543 aa25.61■■□□□ 1.69
SNRNP40-203ENST00000463988 CHMP7Q8WUX9 453 aaPredicted RBP25.6■■□□□ 1.69
SNRNP40-203ENST00000463988 GAPVD1Q14C86 1478 aa25.59■■□□□ 1.69
SNRNP40-203ENST00000463988 SYNJ2O15056 1496 aa25.56■■□□□ 1.68
SNRNP40-203ENST00000463988 WRNQ14191 1432 aaPredicted RBP eCLIP25.55■■□□□ 1.68
SNRNP40-203ENST00000463988 CYB5RLQ6IPT4 315 aa25.53■■□□□ 1.68
SNRNP40-203ENST00000463988 ABCA5Q8WWZ7 1642 aa25.52■■□□□ 1.68
SNRNP40-203ENST00000463988 CLASP1Q7Z460 1538 aa25.52■■□□□ 1.68
SNRNP40-203ENST00000463988 SYNJ1O43426 1573 aa25.52■■□□□ 1.68
SNRNP40-203ENST00000463988 TOP2BQ02880 1626 aa25.51■■□□□ 1.67
SNRNP40-203ENST00000463988 PBRM1Q86U86 1689 aa25.51■■□□□ 1.67
SNRNP40-203ENST00000463988 BIVM-ERCC5R4GMW8 1640 aa25.5■■□□□ 1.67
SNRNP40-203ENST00000463988 ARAP1Q96P48 1450 aa25.48■■□□□ 1.67
SNRNP40-203ENST00000463988 GRIN2AQ12879 1464 aa25.33■■□□□ 1.65
SNRNP40-203ENST00000463988 ADAMTS12P58397 1594 aa25.31■■□□□ 1.64
SNRNP40-203ENST00000463988 FHAD1B1AJZ9 1412 aa25.29■■□□□ 1.64
SNRNP40-203ENST00000463988 ERICH3Q5RHP9 1530 aa25.29■■□□□ 1.64
SNRNP40-203ENST00000463988 NUP160Q12769 1436 aa25.26■■□□□ 1.63
SNRNP40-203ENST00000463988 CEP170Q5SW79 1584 aa25.19■■□□□ 1.62
SNRNP40-203ENST00000463988 TRHP20396 242 aaPredicted RBP25.17■■□□□ 1.62
SNRNP40-203ENST00000463988 SHROOM2Q13796 1616 aa25.1■■□□□ 1.61
SNRNP40-203ENST00000463988 ERCC6L2Q5T890 1561 aa25.08■■□□□ 1.61
SNRNP40-203ENST00000463988 KIF27Q86VH2 1401 aa25.04■■□□□ 1.6
SNRNP40-203ENST00000463988 IGF1RP08069 1367 aa25.02■■□□□ 1.6
SNRNP40-203ENST00000463988 JPH4Q96JJ6 628 aa25■■□□□ 1.59
SNRNP40-203ENST00000463988 PRG4Q92954 1404 aaPredicted RBP24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms