RNA–Protein interactions for RNA: ENST00000463948.1

EGFR-209, Transcript of epidermal growth factor receptor, humanhuman

TSL 3

Gene EGFR, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EGFR-209ENST00000463948 NISCHQ9Y2I1 1504 aa46.93■■■■■ 5.1
EGFR-209ENST00000463948 ABCC9O60706 1549 aa42.28■■■■■ 4.36
EGFR-209ENST00000463948 CCDC180Q9P1Z9 1646 aa41.96■■■■■ 4.31
EGFR-209ENST00000463948 RB1CC1Q8TDY2 1594 aa40.06■■■■■ 4
EGFR-209ENST00000463948 DCAF8L2P0C7V8 631 aa39.98■■■■□ 3.99
EGFR-209ENST00000463948 DNAJC5BQ9UF47 199 aa39.8■■■■□ 3.96
EGFR-209ENST00000463948 NACADO15069 1562 aa39.77■■■■□ 3.96
EGFR-209ENST00000463948 PABPN1Q86U42 306 aaKnown RBP eCLIP39.49■■■■□ 3.91
EGFR-209ENST00000463948 UNC13AQ9UPW8 1703 aa39.13■■■■□ 3.85
EGFR-209ENST00000463948 MYO15BQ96JP2 1530 aa39.13■■■■□ 3.85
EGFR-209ENST00000463948 BICRAQ9NZM4 1560 aa38.92■■■■□ 3.82
EGFR-209ENST00000463948 ZCCHC6Q5VYS8 1495 aaKnown RBP38.83■■■■□ 3.81
EGFR-209ENST00000463948 DCAF1Q9Y4B6 1507 aa38.63■■■■□ 3.78
EGFR-209ENST00000463948 SCRIBQ14160 1630 aa38.42■■■■□ 3.74
EGFR-209ENST00000463948 SHROOM4Q9ULL8 1493 aa38.22■■■■□ 3.71
EGFR-209ENST00000463948 CC2D2AQ9P2K1 1620 aa38.09■■■■□ 3.69
EGFR-209ENST00000463948 CECR2Q9BXF3 1484 aa38.03■■■■□ 3.68
EGFR-209ENST00000463948 EIF4G1Q04637 1599 aaKnown RBP37.97■■■■□ 3.67
EGFR-209ENST00000463948 NCAPD3P42695 1498 aa36.77■■■■□ 3.48
EGFR-209ENST00000463948 ATAD2BQ9ULI0 1458 aa36.69■■■■□ 3.46
EGFR-209ENST00000463948 SMARCA4P51532 1647 aa36.57■■■■□ 3.44
EGFR-209ENST00000463948 SMARCA2P51531 1590 aa36.51■■■■□ 3.44
EGFR-209ENST00000463948 DNAJC5Q9H3Z4 198 aa36.5■■■■□ 3.43
EGFR-209ENST00000463948 ERCC6Q03468 1493 aa36.47■■■■□ 3.43
EGFR-209ENST00000463948 HMGXB3Q12766 1538 aa36.4■■■■□ 3.42
EGFR-209ENST00000463948 BAZ1AQ9NRL2 1556 aaPredicted RBP36.38■■■■□ 3.41
EGFR-209ENST00000463948 BAZ1BQ9UIG0 1483 aaKnown RBP36.32■■■■□ 3.41
EGFR-209ENST00000463948 NESP48681 1621 aa36.3■■■■□ 3.4
EGFR-209ENST00000463948 CUX2O14529 1486 aa36.3■■■■□ 3.4
EGFR-209ENST00000463948 MROH2BQ7Z745 1585 aa36.21■■■■□ 3.39
EGFR-209ENST00000463948 PEG3Q9GZU2 1588 aa36.14■■■■□ 3.38
EGFR-209ENST00000463948 LAMC3Q9Y6N6 1575 aa35.89■■■■□ 3.34
EGFR-209ENST00000463948 PDS5BQ9NTI5 1447 aa35.78■■■■□ 3.32
EGFR-209ENST00000463948 THOC2Q8NI27 1593 aaKnown RBP35.77■■■■□ 3.32
EGFR-209ENST00000463948 WIZO95785 1651 aa35.76■■■■□ 3.32
EGFR-209ENST00000463948 CADPSQ9ULU8 1353 aa35.71■■■■□ 3.31
EGFR-209ENST00000463948 KIF21AQ7Z4S6 1674 aa35.71■■■■□ 3.31
EGFR-209ENST00000463948 RSF1Q96T23 1441 aaPredicted RBP35.47■■■■□ 3.27
EGFR-209ENST00000463948 MRC2Q9UBG0 1479 aa35.44■■■■□ 3.26
EGFR-209ENST00000463948 CEP164Q9UPV0 1460 aa35.3■■■■□ 3.24
EGFR-209ENST00000463948 WDR62O43379 1518 aa35.29■■■■□ 3.24
EGFR-209ENST00000463948 FANCD2Q9BXW9 1451 aa35.29■■■■□ 3.24
EGFR-209ENST00000463948 CFTRP13569 1480 aa35.24■■■■□ 3.23
EGFR-209ENST00000463948 TOP2AP11388 1531 aaKnown RBP35.23■■■■□ 3.23
EGFR-209ENST00000463948 TRIM41Q8WV44 630 aa35.02■■■■□ 3.2
EGFR-209ENST00000463948 URB2Q14146 1524 aaKnown RBP35■■■■□ 3.19
EGFR-209ENST00000463948 CCDC88BA6NC98 1476 aa34.95■■■■□ 3.19
EGFR-209ENST00000463948 OSCARQ8IYS5 282 aa34.84■■■■□ 3.17
EGFR-209ENST00000463948 PRDM2Q13029 1718 aa34.72■■■■□ 3.15
EGFR-209ENST00000463948 ZNF608Q9ULD9 1512 aaPredicted RBP34.61■■■■□ 3.13
EGFR-209ENST00000463948 TOPBP1Q92547 1522 aa34.6■■■■□ 3.13
EGFR-209ENST00000463948 IFT140Q96RY7 1462 aa34.58■■■■□ 3.13
EGFR-209ENST00000463948 ABCC8Q09428 1581 aa34.48■■■■□ 3.11
EGFR-209ENST00000463948 DNMBPQ6XZF7 1577 aa34.41■■■■□ 3.1
EGFR-209ENST00000463948 AQRO60306 1485 aaKnown RBP eCLIP34.35■■■■□ 3.09
EGFR-209ENST00000463948 EIF4G3O43432 1585 aaKnown RBP34.3■■■■□ 3.08
EGFR-209ENST00000463948 FBLN2P98095 1184 aa34.26■■■■□ 3.08
EGFR-209ENST00000463948 TARBP1Q13395 1621 aaKnown RBP34.25■■■■□ 3.07
EGFR-209ENST00000463948 POLA1P09884 1462 aaPredicted RBP34.24■■■■□ 3.07
EGFR-209ENST00000463948 RIMBP3CA6NJZ7 1639 aa34.23■■■■□ 3.07
EGFR-209ENST00000463948 RIMBP3BA6NNM3 1639 aa34.23■■■■□ 3.07
EGFR-209ENST00000463948 RIMBP3Q9UFD9 1639 aa34.23■■■■□ 3.07
EGFR-209ENST00000463948 RAD54L2Q9Y4B4 1467 aa34.21■■■■□ 3.07
EGFR-209ENST00000463948 SOGA1O94964 1423 aa34.17■■■■□ 3.06
EGFR-209ENST00000463948 TDRD9Q8NDG6 1382 aaKnown RBP34.16■■■■□ 3.06
EGFR-209ENST00000463948 ARHGEF11O15085 1522 aa34.14■■■■□ 3.06
EGFR-209ENST00000463948 SUPT5HO00267 1087 aaKnown RBP34.11■■■■□ 3.05
EGFR-209ENST00000463948 CYB5RLQ6IPT4 315 aa34.1■■■■□ 3.05
EGFR-209ENST00000463948 CHD1O14646 1710 aa34.07■■■■□ 3.04
EGFR-209ENST00000463948 FGD5Q6ZNL6 1462 aa34.04■■■■□ 3.04
EGFR-209ENST00000463948 CUX1P39880 1505 aa34■■■■□ 3.03
EGFR-209ENST00000463948 CHMP7Q8WUX9 453 aaPredicted RBP33.92■■■■□ 3.02
EGFR-209ENST00000463948 SNAPC4Q5SXM2 1469 aa33.91■■■■□ 3.02
EGFR-209ENST00000463948 ARAP1Q96P48 1450 aa33.82■■■■□ 3
EGFR-209ENST00000463948 GRIN2BQ13224 1484 aa33.8■■■■□ 3
EGFR-209ENST00000463948 WDR97A6NE52 1622 aa33.76■■■■□ 3
EGFR-209ENST00000463948 MAGI1Q96QZ7 1491 aaPredicted RBP33.76■■■□□ 2.99
EGFR-209ENST00000463948 TRHP20396 242 aaPredicted RBP33.75■■■□□ 2.99
EGFR-209ENST00000463948 GAPVD1Q14C86 1478 aa33.71■■■□□ 2.99
EGFR-209ENST00000463948 SYNJ2O15056 1496 aa33.67■■■□□ 2.98
EGFR-209ENST00000463948 SYNJ1O43426 1573 aa33.65■■■□□ 2.98
EGFR-209ENST00000463948 CLASP1Q7Z460 1538 aa33.65■■■□□ 2.98
EGFR-209ENST00000463948 ABCA10Q8WWZ4 1543 aa33.61■■■□□ 2.97
EGFR-209ENST00000463948 PBRM1Q86U86 1689 aa33.58■■■□□ 2.97
EGFR-209ENST00000463948 WRNQ14191 1432 aaPredicted RBP eCLIP33.53■■■□□ 2.96
EGFR-209ENST00000463948 ABCA5Q8WWZ7 1642 aa33.5■■■□□ 2.95
EGFR-209ENST00000463948 TOP2BQ02880 1626 aa33.38■■■□□ 2.93
EGFR-209ENST00000463948 GRIN2AQ12879 1464 aa33.35■■■□□ 2.93
EGFR-209ENST00000463948 BIVM-ERCC5R4GMW8 1640 aa33.35■■■□□ 2.93
EGFR-209ENST00000463948 ADAMTS12P58397 1594 aa33.27■■■□□ 2.92
EGFR-209ENST00000463948 FHAD1B1AJZ9 1412 aa33.26■■■□□ 2.91
EGFR-209ENST00000463948 ERCC6L2Q5T890 1561 aa33.25■■■□□ 2.91
EGFR-209ENST00000463948 CEP170Q5SW79 1584 aa33.22■■■□□ 2.91
EGFR-209ENST00000463948 NUP160Q12769 1436 aa33.22■■■□□ 2.91
EGFR-209ENST00000463948 ERICH3Q5RHP9 1530 aa33.15■■■□□ 2.9
EGFR-209ENST00000463948 JPH4Q96JJ6 628 aa33.06■■■□□ 2.88
EGFR-209ENST00000463948 SHROOM2Q13796 1616 aa33.01■■■□□ 2.87
EGFR-209ENST00000463948 PRG4Q92954 1404 aaPredicted RBP33.01■■■□□ 2.87
EGFR-209ENST00000463948 IGF1RP08069 1367 aa32.88■■■□□ 2.85
EGFR-209ENST00000463948 KIF27Q86VH2 1401 aa32.82■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 156 ms