RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 NISCHQ9Y2I1 1504 aa46.64■■■■■ 5.06
SF3A1-205ENST00000463818 CCDC180Q9P1Z9 1646 aa41.56■■■■■ 4.24
SF3A1-205ENST00000463818 ABCC9O60706 1549 aa41.53■■■■■ 4.24
SF3A1-205ENST00000463818 RB1CC1Q8TDY2 1594 aa39.55■■■■□ 3.92
SF3A1-205ENST00000463818 DCAF8L2P0C7V8 631 aa39.49■■■■□ 3.91
SF3A1-205ENST00000463818 NACADO15069 1562 aa39.36■■■■□ 3.89
SF3A1-205ENST00000463818 MYO15BQ96JP2 1530 aa38.9■■■■□ 3.82
SF3A1-205ENST00000463818 DNAJC5BQ9UF47 199 aa38.85■■■■□ 3.81
SF3A1-205ENST00000463818 PABPN1Q86U42 306 aaKnown RBP eCLIP38.83■■■■□ 3.81
SF3A1-205ENST00000463818 ZCCHC6Q5VYS8 1495 aaKnown RBP38.67■■■■□ 3.78
SF3A1-205ENST00000463818 DCAF1Q9Y4B6 1507 aa38.5■■■■□ 3.75
SF3A1-205ENST00000463818 UNC13AQ9UPW8 1703 aa38.49■■■■□ 3.75
SF3A1-205ENST00000463818 BICRAQ9NZM4 1560 aa38.38■■■■□ 3.73
SF3A1-205ENST00000463818 SCRIBQ14160 1630 aa37.99■■■■□ 3.67
SF3A1-205ENST00000463818 SHROOM4Q9ULL8 1493 aa37.86■■■■□ 3.65
SF3A1-205ENST00000463818 CC2D2AQ9P2K1 1620 aa37.43■■■■□ 3.58
SF3A1-205ENST00000463818 EIF4G1Q04637 1599 aaKnown RBP37.42■■■■□ 3.58
SF3A1-205ENST00000463818 CECR2Q9BXF3 1484 aa37.37■■■■□ 3.57
SF3A1-205ENST00000463818 NCAPD3P42695 1498 aa36.41■■■■□ 3.42
SF3A1-205ENST00000463818 ATAD2BQ9ULI0 1458 aa36.32■■■■□ 3.41
SF3A1-205ENST00000463818 SMARCA4P51532 1647 aa36.25■■■■□ 3.39
SF3A1-205ENST00000463818 SMARCA2P51531 1590 aa36.18■■■■□ 3.38
SF3A1-205ENST00000463818 BAZ1AQ9NRL2 1556 aaPredicted RBP36.15■■■■□ 3.38
SF3A1-205ENST00000463818 HMGXB3Q12766 1538 aa36.05■■■■□ 3.36
SF3A1-205ENST00000463818 BAZ1BQ9UIG0 1483 aaKnown RBP35.96■■■■□ 3.35
SF3A1-205ENST00000463818 MROH2BQ7Z745 1585 aa35.96■■■■□ 3.35
SF3A1-205ENST00000463818 PEG3Q9GZU2 1588 aa35.89■■■■□ 3.34
SF3A1-205ENST00000463818 ERCC6Q03468 1493 aa35.82■■■■□ 3.32
SF3A1-205ENST00000463818 NESP48681 1621 aa35.73■■■■□ 3.31
SF3A1-205ENST00000463818 CUX2O14529 1486 aa35.62■■■■□ 3.29
SF3A1-205ENST00000463818 WIZO95785 1651 aa35.46■■■■□ 3.27
SF3A1-205ENST00000463818 DNAJC5Q9H3Z4 198 aa35.46■■■■□ 3.27
SF3A1-205ENST00000463818 LAMC3Q9Y6N6 1575 aa35.44■■■■□ 3.26
SF3A1-205ENST00000463818 RSF1Q96T23 1441 aaPredicted RBP35.36■■■■□ 3.25
SF3A1-205ENST00000463818 CADPSQ9ULU8 1353 aa35.36■■■■□ 3.25
SF3A1-205ENST00000463818 PDS5BQ9NTI5 1447 aa35.34■■■■□ 3.25
SF3A1-205ENST00000463818 THOC2Q8NI27 1593 aaKnown RBP35.18■■■■□ 3.22
SF3A1-205ENST00000463818 KIF21AQ7Z4S6 1674 aa35.13■■■■□ 3.21
SF3A1-205ENST00000463818 TOP2AP11388 1531 aaKnown RBP35.06■■■■□ 3.2
SF3A1-205ENST00000463818 MRC2Q9UBG0 1479 aa34.97■■■■□ 3.19
SF3A1-205ENST00000463818 CFTRP13569 1480 aa34.96■■■■□ 3.19
SF3A1-205ENST00000463818 FANCD2Q9BXW9 1451 aa34.9■■■■□ 3.18
SF3A1-205ENST00000463818 CEP164Q9UPV0 1460 aa34.88■■■■□ 3.17
SF3A1-205ENST00000463818 WDR62O43379 1518 aa34.82■■■■□ 3.16
SF3A1-205ENST00000463818 CCDC88BA6NC98 1476 aa34.75■■■■□ 3.15
SF3A1-205ENST00000463818 URB2Q14146 1524 aaKnown RBP34.58■■■■□ 3.13
SF3A1-205ENST00000463818 PRDM2Q13029 1718 aa34.35■■■■□ 3.09
SF3A1-205ENST00000463818 TOPBP1Q92547 1522 aa34.25■■■■□ 3.07
SF3A1-205ENST00000463818 OSCARQ8IYS5 282 aa34.21■■■■□ 3.07
SF3A1-205ENST00000463818 IFT140Q96RY7 1462 aa34.2■■■■□ 3.07
SF3A1-205ENST00000463818 ABCC8Q09428 1581 aa34.2■■■■□ 3.07
SF3A1-205ENST00000463818 SUPT5HO00267 1087 aaKnown RBP34.13■■■■□ 3.05
SF3A1-205ENST00000463818 ZNF608Q9ULD9 1512 aaPredicted RBP34.13■■■■□ 3.05
SF3A1-205ENST00000463818 DNMBPQ6XZF7 1577 aa34.09■■■■□ 3.05
SF3A1-205ENST00000463818 TRIM41Q8WV44 630 aa34.03■■■■□ 3.04
SF3A1-205ENST00000463818 POLA1P09884 1462 aaPredicted RBP33.92■■■■□ 3.02
SF3A1-205ENST00000463818 AQRO60306 1485 aaKnown RBP eCLIP33.91■■■■□ 3.021e-6■■■■□ 22.8
SF3A1-205ENST00000463818 TARBP1Q13395 1621 aaKnown RBP33.86■■■■□ 3.01
SF3A1-205ENST00000463818 SOGA1O94964 1423 aa33.85■■■■□ 3.01
SF3A1-205ENST00000463818 RAD54L2Q9Y4B4 1467 aa33.84■■■■□ 3.01
SF3A1-205ENST00000463818 EIF4G3O43432 1585 aaKnown RBP33.82■■■■□ 3
SF3A1-205ENST00000463818 TDRD9Q8NDG6 1382 aaKnown RBP33.77■■■■□ 3
SF3A1-205ENST00000463818 FGD5Q6ZNL6 1462 aa33.75■■■□□ 2.99
SF3A1-205ENST00000463818 CUX1P39880 1505 aa33.74■■■□□ 2.99
SF3A1-205ENST00000463818 FBLN2P98095 1184 aa33.72■■■□□ 2.99
SF3A1-205ENST00000463818 RIMBP3CA6NJZ7 1639 aa33.53■■■□□ 2.96
SF3A1-205ENST00000463818 RIMBP3BA6NNM3 1639 aa33.53■■■□□ 2.96
SF3A1-205ENST00000463818 RIMBP3Q9UFD9 1639 aa33.53■■■□□ 2.96
SF3A1-205ENST00000463818 CHMP7Q8WUX9 453 aaPredicted RBP33.5■■■□□ 2.95
SF3A1-205ENST00000463818 SNAPC4Q5SXM2 1469 aa33.5■■■□□ 2.95
SF3A1-205ENST00000463818 ARHGEF11O15085 1522 aa33.49■■■□□ 2.95
SF3A1-205ENST00000463818 CHD1O14646 1710 aa33.48■■■□□ 2.95
SF3A1-205ENST00000463818 WDR97A6NE52 1622 aa33.48■■■□□ 2.95
SF3A1-205ENST00000463818 GRIN2BQ13224 1484 aa33.47■■■□□ 2.95
SF3A1-205ENST00000463818 CYB5RLQ6IPT4 315 aa33.41■■■□□ 2.94
SF3A1-205ENST00000463818 MAGI1Q96QZ7 1491 aaPredicted RBP33.4■■■□□ 2.94
SF3A1-205ENST00000463818 GAPVD1Q14C86 1478 aa33.39■■■□□ 2.94
SF3A1-205ENST00000463818 ABCA10Q8WWZ4 1543 aa33.38■■■□□ 2.93
SF3A1-205ENST00000463818 WRNQ14191 1432 aaPredicted RBP eCLIP33.35■■■□□ 2.93
SF3A1-205ENST00000463818 SYNJ2O15056 1496 aa33.31■■■□□ 2.92
SF3A1-205ENST00000463818 TOP2BQ02880 1626 aa33.23■■■□□ 2.91
SF3A1-205ENST00000463818 SYNJ1O43426 1573 aa33.21■■■□□ 2.91
SF3A1-205ENST00000463818 ABCA5Q8WWZ7 1642 aa33.2■■■□□ 2.91
SF3A1-205ENST00000463818 ARAP1Q96P48 1450 aa33.2■■■□□ 2.91
SF3A1-205ENST00000463818 CLASP1Q7Z460 1538 aa33.18■■■□□ 2.9
SF3A1-205ENST00000463818 BIVM-ERCC5R4GMW8 1640 aa33.17■■■□□ 2.9
SF3A1-205ENST00000463818 PBRM1Q86U86 1689 aa33.17■■■□□ 2.9
SF3A1-205ENST00000463818 GRIN2AQ12879 1464 aa33.01■■■□□ 2.88
SF3A1-205ENST00000463818 FHAD1B1AJZ9 1412 aa33■■■□□ 2.87
SF3A1-205ENST00000463818 TRHP20396 242 aaPredicted RBP32.95■■■□□ 2.87
SF3A1-205ENST00000463818 ADAMTS12P58397 1594 aa32.94■■■□□ 2.86
SF3A1-205ENST00000463818 ERICH3Q5RHP9 1530 aa32.93■■■□□ 2.86
SF3A1-205ENST00000463818 NUP160Q12769 1436 aa32.91■■■□□ 2.86
SF3A1-205ENST00000463818 CEP170Q5SW79 1584 aa32.83■■■□□ 2.85
SF3A1-205ENST00000463818 ERCC6L2Q5T890 1561 aa32.74■■■□□ 2.83
SF3A1-205ENST00000463818 IGF1RP08069 1367 aa32.72■■■□□ 2.83
SF3A1-205ENST00000463818 JPH4Q96JJ6 628 aa32.71■■■□□ 2.83
SF3A1-205ENST00000463818 KIF27Q86VH2 1401 aa32.7■■■□□ 2.83
SF3A1-205ENST00000463818 SHROOM2Q13796 1616 aa32.62■■■□□ 2.81
SF3A1-205ENST00000463818 PRG4Q92954 1404 aaPredicted RBP32.62■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms