RNA–Protein interactions for RNA: ENST00000463632.1

RPA3-206, Transcript of replication protein A3, humanhuman

TSL 5

Gene RPA3, Length 793 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3-206ENST00000463632 NISCHQ9Y2I1 1504 aa30.47■■■□□ 2.47
RPA3-206ENST00000463632 ABCC9O60706 1549 aa27.51■■■□□ 2
RPA3-206ENST00000463632 CCDC180Q9P1Z9 1646 aa27.19■■□□□ 1.94
RPA3-206ENST00000463632 DCAF8L2P0C7V8 631 aa26.14■■□□□ 1.78
RPA3-206ENST00000463632 RB1CC1Q8TDY2 1594 aa26.04■■□□□ 1.76
RPA3-206ENST00000463632 NACADO15069 1562 aa25.83■■□□□ 1.73
RPA3-206ENST00000463632 DNAJC5BQ9UF47 199 aa25.82■■□□□ 1.72
RPA3-206ENST00000463632 PABPN1Q86U42 306 aaKnown RBP eCLIP25.73■■□□□ 1.71
RPA3-206ENST00000463632 MYO15BQ96JP2 1530 aa25.38■■□□□ 1.65
RPA3-206ENST00000463632 UNC13AQ9UPW8 1703 aa25.22■■□□□ 1.63
RPA3-206ENST00000463632 ZCCHC6Q5VYS8 1495 aaKnown RBP25.21■■□□□ 1.63
RPA3-206ENST00000463632 BICRAQ9NZM4 1560 aa25.19■■□□□ 1.62
RPA3-206ENST00000463632 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
RPA3-206ENST00000463632 SCRIBQ14160 1630 aa24.97■■□□□ 1.59
RPA3-206ENST00000463632 SHROOM4Q9ULL8 1493 aa24.86■■□□□ 1.57
RPA3-206ENST00000463632 CECR2Q9BXF3 1484 aa24.76■■□□□ 1.55
RPA3-206ENST00000463632 CC2D2AQ9P2K1 1620 aa24.71■■□□□ 1.55
RPA3-206ENST00000463632 EIF4G1Q04637 1599 aaKnown RBP24.65■■□□□ 1.54
RPA3-206ENST00000463632 NCAPD3P42695 1498 aa23.88■■□□□ 1.41
RPA3-206ENST00000463632 ATAD2BQ9ULI0 1458 aa23.84■■□□□ 1.41
RPA3-206ENST00000463632 ERCC6Q03468 1493 aa23.81■■□□□ 1.4
RPA3-206ENST00000463632 SMARCA2P51531 1590 aa23.74■■□□□ 1.39
RPA3-206ENST00000463632 DNAJC5Q9H3Z4 198 aa23.74■■□□□ 1.39
RPA3-206ENST00000463632 SMARCA4P51532 1647 aa23.73■■□□□ 1.39
RPA3-206ENST00000463632 BAZ1BQ9UIG0 1483 aaKnown RBP23.66■■□□□ 1.38
RPA3-206ENST00000463632 BAZ1AQ9NRL2 1556 aaPredicted RBP23.65■■□□□ 1.38
RPA3-206ENST00000463632 HMGXB3Q12766 1538 aa23.64■■□□□ 1.37
RPA3-206ENST00000463632 CUX2O14529 1486 aa23.62■■□□□ 1.37
RPA3-206ENST00000463632 NESP48681 1621 aa23.57■■□□□ 1.36
RPA3-206ENST00000463632 MROH2BQ7Z745 1585 aa23.5■■□□□ 1.35
RPA3-206ENST00000463632 PEG3Q9GZU2 1588 aa23.41■■□□□ 1.34
RPA3-206ENST00000463632 PDS5BQ9NTI5 1447 aa23.32■■□□□ 1.32
RPA3-206ENST00000463632 LAMC3Q9Y6N6 1575 aa23.31■■□□□ 1.32
RPA3-206ENST00000463632 CADPSQ9ULU8 1353 aa23.24■■□□□ 1.31
RPA3-206ENST00000463632 THOC2Q8NI27 1593 aaKnown RBP23.18■■□□□ 1.3
RPA3-206ENST00000463632 WIZO95785 1651 aa23.17■■□□□ 1.3
RPA3-206ENST00000463632 KIF21AQ7Z4S6 1674 aa23.1■■□□□ 1.29
RPA3-206ENST00000463632 MRC2Q9UBG0 1479 aa23.06■■□□□ 1.28
RPA3-206ENST00000463632 RSF1Q96T23 1441 aaPredicted RBP23.05■■□□□ 1.28
RPA3-206ENST00000463632 CEP164Q9UPV0 1460 aa22.99■■□□□ 1.27
RPA3-206ENST00000463632 FANCD2Q9BXW9 1451 aa22.97■■□□□ 1.27
RPA3-206ENST00000463632 WDR62O43379 1518 aa22.92■■□□□ 1.26
RPA3-206ENST00000463632 CFTRP13569 1480 aa22.9■■□□□ 1.26
RPA3-206ENST00000463632 TOP2AP11388 1531 aaKnown RBP22.89■■□□□ 1.26
RPA3-206ENST00000463632 TRIM41Q8WV44 630 aa22.88■■□□□ 1.25
RPA3-206ENST00000463632 URB2Q14146 1524 aaKnown RBP22.72■■□□□ 1.23
RPA3-206ENST00000463632 OSCARQ8IYS5 282 aa22.72■■□□□ 1.23
RPA3-206ENST00000463632 CCDC88BA6NC98 1476 aa22.7■■□□□ 1.22
RPA3-206ENST00000463632 IFT140Q96RY7 1462 aa22.53■■□□□ 1.2
RPA3-206ENST00000463632 TOPBP1Q92547 1522 aa22.49■■□□□ 1.19
RPA3-206ENST00000463632 ZNF608Q9ULD9 1512 aaPredicted RBP22.49■■□□□ 1.19
RPA3-206ENST00000463632 ABCC8Q09428 1581 aa22.44■■□□□ 1.18
RPA3-206ENST00000463632 AEBP2Q6ZN18 517 aaPredicted RBP22.43■■□□□ 1.18
RPA3-206ENST00000463632 PRDM2Q13029 1718 aa22.42■■□□□ 1.18
RPA3-206ENST00000463632 FBLN2P98095 1184 aa22.4■■□□□ 1.18
RPA3-206ENST00000463632 DNMBPQ6XZF7 1577 aa22.36■■□□□ 1.17
RPA3-206ENST00000463632 AQRO60306 1485 aaKnown RBP eCLIP22.34■■□□□ 1.177e-7■■□□□ 14.1
RPA3-206ENST00000463632 SUPT5HO00267 1087 aaKnown RBP22.29■■□□□ 1.16
RPA3-206ENST00000463632 EIF4G3O43432 1585 aaKnown RBP22.27■■□□□ 1.16
RPA3-206ENST00000463632 SOGA1O94964 1423 aa22.26■■□□□ 1.15
RPA3-206ENST00000463632 POLA1P09884 1462 aaPredicted RBP22.26■■□□□ 1.15
RPA3-206ENST00000463632 TDRD9Q8NDG6 1382 aaKnown RBP22.25■■□□□ 1.15
RPA3-206ENST00000463632 RAD54L2Q9Y4B4 1467 aa22.24■■□□□ 1.15
RPA3-206ENST00000463632 CYB5RLQ6IPT4 315 aa22.24■■□□□ 1.15
RPA3-206ENST00000463632 RIMBP3CA6NJZ7 1639 aa22.21■■□□□ 1.15
RPA3-206ENST00000463632 RIMBP3BA6NNM3 1639 aa22.21■■□□□ 1.15
RPA3-206ENST00000463632 RIMBP3Q9UFD9 1639 aa22.21■■□□□ 1.15
RPA3-206ENST00000463632 ARHGEF11O15085 1522 aa22.19■■□□□ 1.14
RPA3-206ENST00000463632 TARBP1Q13395 1621 aaKnown RBP22.18■■□□□ 1.14
RPA3-206ENST00000463632 CHMP7Q8WUX9 453 aaPredicted RBP22.16■■□□□ 1.14
RPA3-206ENST00000463632 FGD5Q6ZNL6 1462 aa22.15■■□□□ 1.14
RPA3-206ENST00000463632 SNAPC4Q5SXM2 1469 aa22.09■■□□□ 1.13
RPA3-206ENST00000463632 TRHP20396 242 aaPredicted RBP22.08■■□□□ 1.13
RPA3-206ENST00000463632 CUX1P39880 1505 aa22.07■■□□□ 1.12
RPA3-206ENST00000463632 CHD1O14646 1710 aa22.05■■□□□ 1.12
RPA3-206ENST00000463632 GRIN2BQ13224 1484 aa22.02■■□□□ 1.12
RPA3-206ENST00000463632 ARAP1Q96P48 1450 aa21.98■■□□□ 1.11
RPA3-206ENST00000463632 MAGI1Q96QZ7 1491 aaPredicted RBP21.96■■□□□ 1.11
RPA3-206ENST00000463632 GAPVD1Q14C86 1478 aa21.94■■□□□ 1.1
RPA3-206ENST00000463632 WDR97A6NE52 1622 aa21.92■■□□□ 1.1
RPA3-206ENST00000463632 SYNJ2O15056 1496 aa21.91■■□□□ 1.1
RPA3-206ENST00000463632 SYNJ1O43426 1573 aa21.9■■□□□ 1.1
RPA3-206ENST00000463632 WRNQ14191 1432 aaPredicted RBP eCLIP21.86■■□□□ 1.09
RPA3-206ENST00000463632 ABCA10Q8WWZ4 1543 aa21.85■■□□□ 1.09
RPA3-206ENST00000463632 CLASP1Q7Z460 1538 aa21.84■■□□□ 1.09
RPA3-206ENST00000463632 PBRM1Q86U86 1689 aa21.75■■□□□ 1.07
RPA3-206ENST00000463632 ABCA5Q8WWZ7 1642 aa21.73■■□□□ 1.07
RPA3-206ENST00000463632 GRIN2AQ12879 1464 aa21.7■■□□□ 1.06
RPA3-206ENST00000463632 TOP2BQ02880 1626 aa21.66■■□□□ 1.06
RPA3-206ENST00000463632 FHAD1B1AJZ9 1412 aa21.66■■□□□ 1.06
RPA3-206ENST00000463632 ADAMTS12P58397 1594 aa21.61■■□□□ 1.05
RPA3-206ENST00000463632 BIVM-ERCC5R4GMW8 1640 aa21.6■■□□□ 1.05
RPA3-206ENST00000463632 NUP160Q12769 1436 aa21.6■■□□□ 1.05
RPA3-206ENST00000463632 CEP170Q5SW79 1584 aa21.57■■□□□ 1.04
RPA3-206ENST00000463632 ERICH3Q5RHP9 1530 aa21.55■■□□□ 1.04
RPA3-206ENST00000463632 ERCC6L2Q5T890 1561 aa21.55■■□□□ 1.04
RPA3-206ENST00000463632 JPH4Q96JJ6 628 aa21.54■■□□□ 1.04
RPA3-206ENST00000463632 PRG4Q92954 1404 aaPredicted RBP21.5■■□□□ 1.03
RPA3-206ENST00000463632 NPM1P06748 294 aaKnown RBP eCLIP21.44■■□□□ 1.02
RPA3-206ENST00000463632 KIF27Q86VH2 1401 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms