RNA–Protein interactions for RNA: ENST00000463503.5

SSR3-202, Transcript of signal sequence receptor subunit 3, humanhuman

TSL 4 BASIC

Gene SSR3, Length 596 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-202ENST00000463503 NISCHQ9Y2I1 1504 aa28.75■■■□□ 2.19
SSR3-202ENST00000463503 ABCC9O60706 1549 aa26.47■■□□□ 1.83
SSR3-202ENST00000463503 CCDC180Q9P1Z9 1646 aa26.2■■□□□ 1.78
SSR3-202ENST00000463503 DNAJC5BQ9UF47 199 aa25.23■■□□□ 1.63
SSR3-202ENST00000463503 RB1CC1Q8TDY2 1594 aa25.05■■□□□ 1.6
SSR3-202ENST00000463503 NACADO15069 1562 aa24.75■■□□□ 1.55
SSR3-202ENST00000463503 UNC13AQ9UPW8 1703 aa24.74■■□□□ 1.55
SSR3-202ENST00000463503 BICRAQ9NZM4 1560 aa24.44■■□□□ 1.5
SSR3-202ENST00000463503 PABPN1Q86U42 306 aaKnown RBP eCLIP24.43■■□□□ 1.5
SSR3-202ENST00000463503 MYO15BQ96JP2 1530 aa24.26■■□□□ 1.47
SSR3-202ENST00000463503 DCAF8L2P0C7V8 631 aa24.14■■□□□ 1.45
SSR3-202ENST00000463503 CC2D2AQ9P2K1 1620 aa24■■□□□ 1.43
SSR3-202ENST00000463503 SHROOM4Q9ULL8 1493 aa23.99■■□□□ 1.43
SSR3-202ENST00000463503 CECR2Q9BXF3 1484 aa23.9■■□□□ 1.42
SSR3-202ENST00000463503 EIF4G1Q04637 1599 aaKnown RBP23.82■■□□□ 1.4
SSR3-202ENST00000463503 ZCCHC6Q5VYS8 1495 aaKnown RBP23.77■■□□□ 1.4
SSR3-202ENST00000463503 DCAF1Q9Y4B6 1507 aa23.77■■□□□ 1.4
SSR3-202ENST00000463503 SCRIBQ14160 1630 aa23.73■■□□□ 1.39
SSR3-202ENST00000463503 DNAJC5Q9H3Z4 198 aa23.49■■□□□ 1.35
SSR3-202ENST00000463503 CUX2O14529 1486 aa23.06■■□□□ 1.28
SSR3-202ENST00000463503 ERCC6Q03468 1493 aa22.85■■□□□ 1.25
SSR3-202ENST00000463503 NCAPD3P42695 1498 aa22.79■■□□□ 1.24
SSR3-202ENST00000463503 HMGXB3Q12766 1538 aa22.68■■□□□ 1.22
SSR3-202ENST00000463503 ATAD2BQ9ULI0 1458 aa22.66■■□□□ 1.22
SSR3-202ENST00000463503 THOC2Q8NI27 1593 aaKnown RBP22.66■■□□□ 1.22
SSR3-202ENST00000463503 NESP48681 1621 aa22.64■■□□□ 1.22
SSR3-202ENST00000463503 SMARCA4P51532 1647 aa22.62■■□□□ 1.21
SSR3-202ENST00000463503 SMARCA2P51531 1590 aa22.6■■□□□ 1.21
SSR3-202ENST00000463503 KIF21AQ7Z4S6 1674 aa22.5■■□□□ 1.19
SSR3-202ENST00000463503 LAMC3Q9Y6N6 1575 aa22.44■■□□□ 1.18
SSR3-202ENST00000463503 PEG3Q9GZU2 1588 aa22.42■■□□□ 1.18
SSR3-202ENST00000463503 BAZ1BQ9UIG0 1483 aaKnown RBP22.41■■□□□ 1.18
SSR3-202ENST00000463503 BAZ1AQ9NRL2 1556 aaPredicted RBP22.36■■□□□ 1.17
SSR3-202ENST00000463503 PDS5BQ9NTI5 1447 aa22.18■■□□□ 1.14
SSR3-202ENST00000463503 TRIM41Q8WV44 630 aa22.18■■□□□ 1.14
SSR3-202ENST00000463503 MROH2BQ7Z745 1585 aa22.16■■□□□ 1.14
SSR3-202ENST00000463503 WDR62O43379 1518 aa22.16■■□□□ 1.14
SSR3-202ENST00000463503 MRC2Q9UBG0 1479 aa22.11■■□□□ 1.13
SSR3-202ENST00000463503 CADPSQ9ULU8 1353 aa22.01■■□□□ 1.11
SSR3-202ENST00000463503 WIZO95785 1651 aa21.94■■□□□ 1.1
SSR3-202ENST00000463503 CEP164Q9UPV0 1460 aa21.91■■□□□ 1.1
SSR3-202ENST00000463503 FANCD2Q9BXW9 1451 aa21.83■■□□□ 1.08
SSR3-202ENST00000463503 RIMBP3CA6NJZ7 1639 aa21.79■■□□□ 1.08
SSR3-202ENST00000463503 RIMBP3BA6NNM3 1639 aa21.79■■□□□ 1.08
SSR3-202ENST00000463503 RIMBP3Q9UFD9 1639 aa21.79■■□□□ 1.08
SSR3-202ENST00000463503 PRDM2Q13029 1718 aa21.76■■□□□ 1.07
SSR3-202ENST00000463503 URB2Q14146 1524 aaKnown RBP21.74■■□□□ 1.07
SSR3-202ENST00000463503 CFTRP13569 1480 aa21.73■■□□□ 1.07
SSR3-202ENST00000463503 OSCARQ8IYS5 282 aa21.72■■□□□ 1.07
SSR3-202ENST00000463503 ARHGEF11O15085 1522 aa21.6■■□□□ 1.05
SSR3-202ENST00000463503 TOP2AP11388 1531 aaKnown RBP21.59■■□□□ 1.05
SSR3-202ENST00000463503 ZNF608Q9ULD9 1512 aaPredicted RBP21.53■■□□□ 1.04
SSR3-202ENST00000463503 EIF4G3O43432 1585 aaKnown RBP21.5■■□□□ 1.03
SSR3-202ENST00000463503 CHD1O14646 1710 aa21.49■■□□□ 1.03
SSR3-202ENST00000463503 IFT140Q96RY7 1462 aa21.46■■□□□ 1.03
SSR3-202ENST00000463503 RSF1Q96T23 1441 aaPredicted RBP21.45■■□□□ 1.02
SSR3-202ENST00000463503 TOPBP1Q92547 1522 aa21.39■■□□□ 1.01
SSR3-202ENST00000463503 ARAP1Q96P48 1450 aa21.35■■□□□ 1.01
SSR3-202ENST00000463503 TARBP1Q13395 1621 aaKnown RBP21.34■■□□□ 1.01
SSR3-202ENST00000463503 DNMBPQ6XZF7 1577 aa21.31■■□□□ 1
SSR3-202ENST00000463503 CCDC88BA6NC98 1476 aa21.26■□□□□ 0.99
SSR3-202ENST00000463503 CYB5RLQ6IPT4 315 aa21.25■□□□□ 0.99
SSR3-202ENST00000463503 ABCC8Q09428 1581 aa21.24■□□□□ 0.99
SSR3-202ENST00000463503 AQRO60306 1485 aaKnown RBP eCLIP21.2■□□□□ 0.985e-6■■■□□ 14.9
SSR3-202ENST00000463503 CLASP1Q7Z460 1538 aa21.15■□□□□ 0.98
SSR3-202ENST00000463503 POLA1P09884 1462 aaPredicted RBP21.14■□□□□ 0.98
SSR3-202ENST00000463503 TRHP20396 242 aaPredicted RBP21.13■□□□□ 0.97
SSR3-202ENST00000463503 WDR97A6NE52 1622 aa21.08■□□□□ 0.97
SSR3-202ENST00000463503 SNAPC4Q5SXM2 1469 aa21.03■□□□□ 0.96
SSR3-202ENST00000463503 SYNJ1O43426 1573 aa21.02■□□□□ 0.96
SSR3-202ENST00000463503 RAD54L2Q9Y4B4 1467 aa21.02■□□□□ 0.96
SSR3-202ENST00000463503 FBLN2P98095 1184 aa20.98■□□□□ 0.95
SSR3-202ENST00000463503 PBRM1Q86U86 1689 aa20.96■□□□□ 0.95
SSR3-202ENST00000463503 MAGI1Q96QZ7 1491 aaPredicted RBP20.95■□□□□ 0.94
SSR3-202ENST00000463503 TDRD9Q8NDG6 1382 aaKnown RBP20.94■□□□□ 0.94
SSR3-202ENST00000463503 FGD5Q6ZNL6 1462 aa20.93■□□□□ 0.94
SSR3-202ENST00000463503 SOGA1O94964 1423 aa20.91■□□□□ 0.94
SSR3-202ENST00000463503 SYNJ2O15056 1496 aa20.88■□□□□ 0.93
SSR3-202ENST00000463503 CUX1P39880 1505 aa20.87■□□□□ 0.93
SSR3-202ENST00000463503 AEBP2Q6ZN18 517 aaPredicted RBP20.86■□□□□ 0.93
SSR3-202ENST00000463503 GRIN2BQ13224 1484 aa20.86■□□□□ 0.93
SSR3-202ENST00000463503 GAPVD1Q14C86 1478 aa20.83■□□□□ 0.93
SSR3-202ENST00000463503 ABCA5Q8WWZ7 1642 aa20.81■□□□□ 0.92
SSR3-202ENST00000463503 ERCC6L2Q5T890 1561 aa20.77■□□□□ 0.92
SSR3-202ENST00000463503 CHMP7Q8WUX9 453 aaPredicted RBP20.77■□□□□ 0.92
SSR3-202ENST00000463503 KIF13AQ9H1H9 1805 aa20.76■□□□□ 0.91
SSR3-202ENST00000463503 SHROOM2Q13796 1616 aa20.68■□□□□ 0.9
SSR3-202ENST00000463503 CEP170Q5SW79 1584 aa20.67■□□□□ 0.9
SSR3-202ENST00000463503 ABCA10Q8WWZ4 1543 aa20.66■□□□□ 0.9
SSR3-202ENST00000463503 ADAMTS12P58397 1594 aa20.66■□□□□ 0.9
SSR3-202ENST00000463503 GRIN2AQ12879 1464 aa20.63■□□□□ 0.89
SSR3-202ENST00000463503 NUP160Q12769 1436 aa20.59■□□□□ 0.89
SSR3-202ENST00000463503 BIVM-ERCC5R4GMW8 1640 aa20.49■□□□□ 0.87
SSR3-202ENST00000463503 DIP2BQ9P265 1576 aa20.42■□□□□ 0.86
SSR3-202ENST00000463503 TOP2BQ02880 1626 aa20.42■□□□□ 0.86
SSR3-202ENST00000463503 FHAD1B1AJZ9 1412 aa20.41■□□□□ 0.86
SSR3-202ENST00000463503 ERICH3Q5RHP9 1530 aa20.41■□□□□ 0.86
SSR3-202ENST00000463503 RUSC2Q8N2Y8 1516 aa20.41■□□□□ 0.86
SSR3-202ENST00000463503 MAPKBP1O60336 1514 aa20.39■□□□□ 0.85
SSR3-202ENST00000463503 ABCC10Q5T3U5 1492 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms