RNA–Protein interactions for RNA: ENST00000463440.1

COL1A1-202, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 614 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-202ENST00000463440 NISCHQ9Y2I1 1504 aa39.71■■■■□ 3.95
COL1A1-202ENST00000463440 CCDC180Q9P1Z9 1646 aa35.41■■■■□ 3.26
COL1A1-202ENST00000463440 ABCC9O60706 1549 aa34.86■■■■□ 3.17
COL1A1-202ENST00000463440 RB1CC1Q8TDY2 1594 aa33.46■■■□□ 2.95
COL1A1-202ENST00000463440 NACADO15069 1562 aa33.36■■■□□ 2.93
COL1A1-202ENST00000463440 DCAF8L2P0C7V8 631 aa33.33■■■□□ 2.93
COL1A1-202ENST00000463440 MYO15BQ96JP2 1530 aa33.09■■■□□ 2.89
COL1A1-202ENST00000463440 ZCCHC6Q5VYS8 1495 aaKnown RBP33.03■■■□□ 2.88
COL1A1-202ENST00000463440 DCAF1Q9Y4B6 1507 aa32.86■■■□□ 2.85
COL1A1-202ENST00000463440 UNC13AQ9UPW8 1703 aa32.64■■■□□ 2.82
COL1A1-202ENST00000463440 PABPN1Q86U42 306 aaKnown RBP eCLIP32.55■■■□□ 2.8
COL1A1-202ENST00000463440 BICRAQ9NZM4 1560 aa32.41■■■□□ 2.78
COL1A1-202ENST00000463440 SCRIBQ14160 1630 aa32.29■■■□□ 2.76
COL1A1-202ENST00000463440 DNAJC5BQ9UF47 199 aa32.19■■■□□ 2.74
COL1A1-202ENST00000463440 SHROOM4Q9ULL8 1493 aa32.1■■■□□ 2.73
COL1A1-202ENST00000463440 EIF4G1Q04637 1599 aaKnown RBP31.6■■■□□ 2.65
COL1A1-202ENST00000463440 CC2D2AQ9P2K1 1620 aa31.52■■■□□ 2.64
COL1A1-202ENST00000463440 CECR2Q9BXF3 1484 aa31.37■■■□□ 2.61
COL1A1-202ENST00000463440 SMARCA4P51532 1647 aa30.86■■■□□ 2.53
COL1A1-202ENST00000463440 BAZ1AQ9NRL2 1556 aaPredicted RBP30.81■■■□□ 2.52
COL1A1-202ENST00000463440 NCAPD3P42695 1498 aa30.78■■■□□ 2.52
COL1A1-202ENST00000463440 ATAD2BQ9ULI0 1458 aa30.76■■■□□ 2.51
COL1A1-202ENST00000463440 SMARCA2P51531 1590 aa30.73■■■□□ 2.51
COL1A1-202ENST00000463440 HMGXB3Q12766 1538 aa30.61■■■□□ 2.49
COL1A1-202ENST00000463440 MROH2BQ7Z745 1585 aa30.59■■■□□ 2.49
COL1A1-202ENST00000463440 PEG3Q9GZU2 1588 aa30.56■■■□□ 2.48
COL1A1-202ENST00000463440 BAZ1BQ9UIG0 1483 aaKnown RBP30.51■■■□□ 2.48
COL1A1-202ENST00000463440 WIZO95785 1651 aa30.25■■■□□ 2.43
COL1A1-202ENST00000463440 RSF1Q96T23 1441 aaPredicted RBP30.17■■■□□ 2.42
COL1A1-202ENST00000463440 ERCC6Q03468 1493 aa30.11■■■□□ 2.41
COL1A1-202ENST00000463440 NESP48681 1621 aa30.09■■■□□ 2.41
COL1A1-202ENST00000463440 LAMC3Q9Y6N6 1575 aa30.01■■■□□ 2.39
COL1A1-202ENST00000463440 TOP2AP11388 1531 aaKnown RBP29.93■■■□□ 2.38
COL1A1-202ENST00000463440 CADPSQ9ULU8 1353 aa29.89■■■□□ 2.37
COL1A1-202ENST00000463440 CUX2O14529 1486 aa29.86■■■□□ 2.37
COL1A1-202ENST00000463440 PDS5BQ9NTI5 1447 aa29.84■■■□□ 2.37
COL1A1-202ENST00000463440 KIF21AQ7Z4S6 1674 aa29.72■■■□□ 2.35
COL1A1-202ENST00000463440 THOC2Q8NI27 1593 aaKnown RBP29.68■■■□□ 2.34
COL1A1-202ENST00000463440 CFTRP13569 1480 aa29.64■■■□□ 2.34
COL1A1-202ENST00000463440 CCDC88BA6NC98 1476 aa29.58■■■□□ 2.33
COL1A1-202ENST00000463440 FANCD2Q9BXW9 1451 aa29.54■■■□□ 2.32
COL1A1-202ENST00000463440 MRC2Q9UBG0 1479 aa29.53■■■□□ 2.32
COL1A1-202ENST00000463440 CEP164Q9UPV0 1460 aa29.53■■■□□ 2.32
COL1A1-202ENST00000463440 WDR62O43379 1518 aa29.41■■■□□ 2.3
COL1A1-202ENST00000463440 PRDM2Q13029 1718 aa29.39■■■□□ 2.3
COL1A1-202ENST00000463440 SUPT5HO00267 1087 aaKnown RBP29.28■■■□□ 2.28
COL1A1-202ENST00000463440 URB2Q14146 1524 aaKnown RBP29.24■■■□□ 2.27
COL1A1-202ENST00000463440 DNAJC5Q9H3Z4 198 aa29.2■■■□□ 2.26
COL1A1-202ENST00000463440 ABCC8Q09428 1581 aa29.05■■■□□ 2.24
COL1A1-202ENST00000463440 TOPBP1Q92547 1522 aa29.04■■■□□ 2.24
COL1A1-202ENST00000463440 DNMBPQ6XZF7 1577 aa28.98■■■□□ 2.23
COL1A1-202ENST00000463440 IFT140Q96RY7 1462 aa28.92■■■□□ 2.22
COL1A1-202ENST00000463440 ZNF608Q9ULD9 1512 aaPredicted RBP28.78■■■□□ 2.2
COL1A1-202ENST00000463440 POLA1P09884 1462 aaPredicted RBP28.77■■■□□ 2.2
COL1A1-202ENST00000463440 CUX1P39880 1505 aa28.72■■■□□ 2.19
COL1A1-202ENST00000463440 TARBP1Q13395 1621 aaKnown RBP28.71■■■□□ 2.19
COL1A1-202ENST00000463440 FGD5Q6ZNL6 1462 aa28.67■■■□□ 2.18
COL1A1-202ENST00000463440 SOGA1O94964 1423 aa28.67■■■□□ 2.18
COL1A1-202ENST00000463440 EIF4G3O43432 1585 aaKnown RBP28.66■■■□□ 2.18
COL1A1-202ENST00000463440 RAD54L2Q9Y4B4 1467 aa28.64■■■□□ 2.17
COL1A1-202ENST00000463440 AQRO60306 1485 aaKnown RBP eCLIP28.6■■■□□ 2.17
COL1A1-202ENST00000463440 OSCARQ8IYS5 282 aa28.6■■■□□ 2.17
COL1A1-202ENST00000463440 TDRD9Q8NDG6 1382 aaKnown RBP28.52■■■□□ 2.16
COL1A1-202ENST00000463440 WDR97A6NE52 1622 aa28.51■■■□□ 2.15
COL1A1-202ENST00000463440 WRNQ14191 1432 aaPredicted RBP eCLIP28.48■■■□□ 2.15
COL1A1-202ENST00000463440 TOP2BQ02880 1626 aa28.42■■■□□ 2.14
COL1A1-202ENST00000463440 BIVM-ERCC5R4GMW8 1640 aa28.41■■■□□ 2.14
COL1A1-202ENST00000463440 ABCA10Q8WWZ4 1543 aa28.38■■■□□ 2.13
COL1A1-202ENST00000463440 SYNJ1O43426 1573 aa28.38■■■□□ 2.13
COL1A1-202ENST00000463440 GRIN2BQ13224 1484 aa28.36■■■□□ 2.13
COL1A1-202ENST00000463440 FBLN2P98095 1184 aa28.35■■■□□ 2.13
COL1A1-202ENST00000463440 SNAPC4Q5SXM2 1469 aa28.34■■■□□ 2.13
COL1A1-202ENST00000463440 CHD1O14646 1710 aa28.33■■■□□ 2.13
COL1A1-202ENST00000463440 GAPVD1Q14C86 1478 aa28.33■■■□□ 2.13
COL1A1-202ENST00000463440 MAGI1Q96QZ7 1491 aaPredicted RBP28.31■■■□□ 2.12
COL1A1-202ENST00000463440 ABCA5Q8WWZ7 1642 aa28.27■■■□□ 2.12
COL1A1-202ENST00000463440 PBRM1Q86U86 1689 aa28.26■■■□□ 2.11
COL1A1-202ENST00000463440 CHMP7Q8WUX9 453 aaPredicted RBP28.24■■■□□ 2.11
COL1A1-202ENST00000463440 SYNJ2O15056 1496 aa28.2■■■□□ 2.1
COL1A1-202ENST00000463440 TRIM41Q8WV44 630 aa28.16■■■□□ 2.1
COL1A1-202ENST00000463440 RIMBP3CA6NJZ7 1639 aa28.12■■■□□ 2.09
COL1A1-202ENST00000463440 RIMBP3BA6NNM3 1639 aa28.12■■■□□ 2.09
COL1A1-202ENST00000463440 RIMBP3Q9UFD9 1639 aa28.12■■■□□ 2.09
COL1A1-202ENST00000463440 ARHGEF11O15085 1522 aa28.1■■■□□ 2.09
COL1A1-202ENST00000463440 ERICH3Q5RHP9 1530 aa28.05■■■□□ 2.08
COL1A1-202ENST00000463440 ADAMTS12P58397 1594 aa28.03■■■□□ 2.08
COL1A1-202ENST00000463440 CLASP1Q7Z460 1538 aa28.02■■■□□ 2.08
COL1A1-202ENST00000463440 FHAD1B1AJZ9 1412 aa28■■■□□ 2.07
COL1A1-202ENST00000463440 GRIN2AQ12879 1464 aa27.98■■■□□ 2.07
COL1A1-202ENST00000463440 KIF27Q86VH2 1401 aa27.92■■■□□ 2.06
COL1A1-202ENST00000463440 CYB5RLQ6IPT4 315 aa27.88■■■□□ 2.05
COL1A1-202ENST00000463440 NUP160Q12769 1436 aa27.86■■■□□ 2.05
COL1A1-202ENST00000463440 ARAP1Q96P48 1450 aa27.85■■■□□ 2.05
COL1A1-202ENST00000463440 CEP170Q5SW79 1584 aa27.83■■■□□ 2.05
COL1A1-202ENST00000463440 IGF1RP08069 1367 aa27.81■■■□□ 2.04
COL1A1-202ENST00000463440 CUL7Q14999 1698 aa27.75■■■□□ 2.03
COL1A1-202ENST00000463440 SHROOM2Q13796 1616 aa27.66■■■□□ 2.02
COL1A1-202ENST00000463440 CARMIL1Q5VZK9 1371 aa27.65■■■□□ 2.02
COL1A1-202ENST00000463440 RUSC2Q8N2Y8 1516 aa27.61■■■□□ 2.01
COL1A1-202ENST00000463440 ERCC6L2Q5T890 1561 aa27.6■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms