RNA–Protein interactions for RNA: ENST00000463411.1

PDLIM7-206, Transcript of PDZ and LIM domain 7, humanhuman

TSL 2

Gene PDLIM7, Length 1,015 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-206ENST00000463411 NISCHQ9Y2I1 1504 aa54.97■■■■■ 6.39
PDLIM7-206ENST00000463411 CCDC180Q9P1Z9 1646 aa49.29■■■■■ 5.48
PDLIM7-206ENST00000463411 ABCC9O60706 1549 aa48.79■■■■■ 5.4
PDLIM7-206ENST00000463411 RB1CC1Q8TDY2 1594 aa46.71■■■■■ 5.07
PDLIM7-206ENST00000463411 NACADO15069 1562 aa46.46■■■■■ 5.03
PDLIM7-206ENST00000463411 DCAF8L2P0C7V8 631 aa46.18■■■■■ 4.98
PDLIM7-206ENST00000463411 MYO15BQ96JP2 1530 aa45.93■■■■■ 4.94
PDLIM7-206ENST00000463411 ZCCHC6Q5VYS8 1495 aaKnown RBP45.67■■■■■ 4.9
PDLIM7-206ENST00000463411 UNC13AQ9UPW8 1703 aa45.64■■■■■ 4.9
PDLIM7-206ENST00000463411 DCAF1Q9Y4B6 1507 aa45.47■■■■■ 4.87
PDLIM7-206ENST00000463411 PABPN1Q86U42 306 aaKnown RBP eCLIP45.41■■■■■ 4.86
PDLIM7-206ENST00000463411 DNAJC5BQ9UF47 199 aa45.27■■■■■ 4.84
PDLIM7-206ENST00000463411 BICRAQ9NZM4 1560 aa45.23■■■■■ 4.83
PDLIM7-206ENST00000463411 SCRIBQ14160 1630 aa44.88■■■■■ 4.78
PDLIM7-206ENST00000463411 SHROOM4Q9ULL8 1493 aa44.78■■■■■ 4.76
PDLIM7-206ENST00000463411 EIF4G1Q04637 1599 aaKnown RBP44.14■■■■■ 4.66
PDLIM7-206ENST00000463411 CC2D2AQ9P2K1 1620 aa44.13■■■■■ 4.66
PDLIM7-206ENST00000463411 CECR2Q9BXF3 1484 aa43.94■■■■■ 4.62
PDLIM7-206ENST00000463411 SMARCA4P51532 1647 aa42.85■■■■■ 4.45
PDLIM7-206ENST00000463411 NCAPD3P42695 1498 aa42.81■■■■■ 4.44
PDLIM7-206ENST00000463411 ATAD2BQ9ULI0 1458 aa42.73■■■■■ 4.43
PDLIM7-206ENST00000463411 SMARCA2P51531 1590 aa42.73■■■■■ 4.43
PDLIM7-206ENST00000463411 BAZ1AQ9NRL2 1556 aaPredicted RBP42.71■■■■■ 4.43
PDLIM7-206ENST00000463411 HMGXB3Q12766 1538 aa42.61■■■■■ 4.41
PDLIM7-206ENST00000463411 PEG3Q9GZU2 1588 aa42.43■■■■■ 4.38
PDLIM7-206ENST00000463411 BAZ1BQ9UIG0 1483 aaKnown RBP42.4■■■■■ 4.38
PDLIM7-206ENST00000463411 MROH2BQ7Z745 1585 aa42.33■■■■■ 4.37
PDLIM7-206ENST00000463411 ERCC6Q03468 1493 aa42.18■■■■■ 4.34
PDLIM7-206ENST00000463411 NESP48681 1621 aa41.99■■■■■ 4.31
PDLIM7-206ENST00000463411 CUX2O14529 1486 aa41.97■■■■■ 4.31
PDLIM7-206ENST00000463411 WIZO95785 1651 aa41.89■■■■■ 4.3
PDLIM7-206ENST00000463411 LAMC3Q9Y6N6 1575 aa41.88■■■■■ 4.29
PDLIM7-206ENST00000463411 THOC2Q8NI27 1593 aaKnown RBP41.59■■■■■ 4.25
PDLIM7-206ENST00000463411 PDS5BQ9NTI5 1447 aa41.58■■■■■ 4.25
PDLIM7-206ENST00000463411 KIF21AQ7Z4S6 1674 aa41.58■■■■■ 4.25
PDLIM7-206ENST00000463411 RSF1Q96T23 1441 aaPredicted RBP41.57■■■■■ 4.25
PDLIM7-206ENST00000463411 CADPSQ9ULU8 1353 aa41.51■■■■■ 4.24
PDLIM7-206ENST00000463411 TOP2AP11388 1531 aaKnown RBP41.43■■■■■ 4.22
PDLIM7-206ENST00000463411 DNAJC5Q9H3Z4 198 aa41.38■■■■■ 4.21
PDLIM7-206ENST00000463411 MRC2Q9UBG0 1479 aa41.21■■■■■ 4.19
PDLIM7-206ENST00000463411 CFTRP13569 1480 aa41.14■■■■■ 4.18
PDLIM7-206ENST00000463411 CEP164Q9UPV0 1460 aa41.14■■■■■ 4.18
PDLIM7-206ENST00000463411 WDR62O43379 1518 aa41.1■■■■■ 4.17
PDLIM7-206ENST00000463411 FANCD2Q9BXW9 1451 aa41.09■■■■■ 4.17
PDLIM7-206ENST00000463411 PRDM2Q13029 1718 aa40.93■■■■■ 4.14
PDLIM7-206ENST00000463411 CCDC88BA6NC98 1476 aa40.87■■■■■ 4.13
PDLIM7-206ENST00000463411 URB2Q14146 1524 aaKnown RBP40.69■■■■■ 4.1
PDLIM7-206ENST00000463411 TOPBP1Q92547 1522 aa40.35■■■■■ 4.05
PDLIM7-206ENST00000463411 ABCC8Q09428 1581 aa40.34■■■■■ 4.05
PDLIM7-206ENST00000463411 IFT140Q96RY7 1462 aa40.29■■■■■ 4.04
PDLIM7-206ENST00000463411 DNMBPQ6XZF7 1577 aa40.28■■■■■ 4.04
PDLIM7-206ENST00000463411 ZNF608Q9ULD9 1512 aaPredicted RBP40.11■■■■■ 4.01
PDLIM7-206ENST00000463411 OSCARQ8IYS5 282 aa40.03■■■■■ 4
PDLIM7-206ENST00000463411 EIF4G3O43432 1585 aaKnown RBP40.01■■■■■ 4
PDLIM7-206ENST00000463411 SUPT5HO00267 1087 aaKnown RBP40.01■■■■■ 4
PDLIM7-206ENST00000463411 TARBP1Q13395 1621 aaKnown RBP39.98■■■■□ 3.99
PDLIM7-206ENST00000463411 POLA1P09884 1462 aaPredicted RBP39.95■■■■□ 3.99
PDLIM7-206ENST00000463411 AQRO60306 1485 aaKnown RBP eCLIP39.79■■■■□ 3.962e-10■■■■■ 30.5
PDLIM7-206ENST00000463411 CUX1P39880 1505 aa39.77■■■■□ 3.96
PDLIM7-206ENST00000463411 FGD5Q6ZNL6 1462 aa39.77■■■■□ 3.96
PDLIM7-206ENST00000463411 TRIM41Q8WV44 630 aa39.77■■■■□ 3.96
PDLIM7-206ENST00000463411 SOGA1O94964 1423 aa39.76■■■■□ 3.96
PDLIM7-206ENST00000463411 RAD54L2Q9Y4B4 1467 aa39.75■■■■□ 3.95
PDLIM7-206ENST00000463411 WDR97A6NE52 1622 aa39.69■■■■□ 3.94
PDLIM7-206ENST00000463411 CHD1O14646 1710 aa39.66■■■■□ 3.94
PDLIM7-206ENST00000463411 TDRD9Q8NDG6 1382 aaKnown RBP39.59■■■■□ 3.93
PDLIM7-206ENST00000463411 RIMBP3CA6NJZ7 1639 aa39.54■■■■□ 3.92
PDLIM7-206ENST00000463411 RIMBP3BA6NNM3 1639 aa39.54■■■■□ 3.92
PDLIM7-206ENST00000463411 RIMBP3Q9UFD9 1639 aa39.54■■■■□ 3.92
PDLIM7-206ENST00000463411 FBLN2P98095 1184 aa39.48■■■■□ 3.91
PDLIM7-206ENST00000463411 SNAPC4Q5SXM2 1469 aa39.46■■■■□ 3.91
PDLIM7-206ENST00000463411 ARHGEF11O15085 1522 aa39.44■■■■□ 3.9
PDLIM7-206ENST00000463411 GRIN2BQ13224 1484 aa39.42■■■■□ 3.9
PDLIM7-206ENST00000463411 MAGI1Q96QZ7 1491 aaPredicted RBP39.41■■■■□ 3.9
PDLIM7-206ENST00000463411 PBRM1Q86U86 1689 aa39.37■■■■□ 3.89
PDLIM7-206ENST00000463411 ABCA10Q8WWZ4 1543 aa39.35■■■■□ 3.89
PDLIM7-206ENST00000463411 BIVM-ERCC5R4GMW8 1640 aa39.32■■■■□ 3.88
PDLIM7-206ENST00000463411 GAPVD1Q14C86 1478 aa39.31■■■■□ 3.88
PDLIM7-206ENST00000463411 TOP2BQ02880 1626 aa39.29■■■■□ 3.88
PDLIM7-206ENST00000463411 ABCA5Q8WWZ7 1642 aa39.29■■■■□ 3.88
PDLIM7-206ENST00000463411 WRNQ14191 1432 aaPredicted RBP eCLIP39.27■■■■□ 3.88
PDLIM7-206ENST00000463411 CHMP7Q8WUX9 453 aaPredicted RBP39.26■■■■□ 3.88
PDLIM7-206ENST00000463411 SYNJ2O15056 1496 aa39.25■■■■□ 3.87
PDLIM7-206ENST00000463411 SYNJ1O43426 1573 aa39.24■■■■□ 3.87
PDLIM7-206ENST00000463411 CLASP1Q7Z460 1538 aa39.16■■■■□ 3.86
PDLIM7-206ENST00000463411 CYB5RLQ6IPT4 315 aa39.05■■■■□ 3.84
PDLIM7-206ENST00000463411 ARAP1Q96P48 1450 aa39.05■■■■□ 3.84
PDLIM7-206ENST00000463411 ADAMTS12P58397 1594 aa38.97■■■■□ 3.83
PDLIM7-206ENST00000463411 GRIN2AQ12879 1464 aa38.91■■■■□ 3.82
PDLIM7-206ENST00000463411 ERICH3Q5RHP9 1530 aa38.89■■■■□ 3.82
PDLIM7-206ENST00000463411 FHAD1B1AJZ9 1412 aa38.84■■■■□ 3.81
PDLIM7-206ENST00000463411 CEP170Q5SW79 1584 aa38.75■■■■□ 3.79
PDLIM7-206ENST00000463411 NUP160Q12769 1436 aa38.73■■■■□ 3.79
PDLIM7-206ENST00000463411 SHROOM2Q13796 1616 aa38.57■■■■□ 3.77
PDLIM7-206ENST00000463411 TRHP20396 242 aaPredicted RBP38.55■■■■□ 3.76
PDLIM7-206ENST00000463411 ERCC6L2Q5T890 1561 aa38.53■■■■□ 3.76
PDLIM7-206ENST00000463411 KIF27Q86VH2 1401 aa38.52■■■■□ 3.76
PDLIM7-206ENST00000463411 CUL7Q14999 1698 aa38.46■■■■□ 3.75
PDLIM7-206ENST00000463411 RUSC2Q8N2Y8 1516 aa38.43■■■■□ 3.74
PDLIM7-206ENST00000463411 IGF1RP08069 1367 aa38.36■■■■□ 3.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms