RNA–Protein interactions for RNA: ENST00000463209.1

TMEM254-208, Transcript of transmembrane protein 254, humanhuman

TSL 3

Gene TMEM254, Length 407 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM254-208ENST00000463209 NISCHQ9Y2I1 1504 aa21.17■□□□□ 0.98
TMEM254-208ENST00000463209 CCDC180Q9P1Z9 1646 aa18.86■□□□□ 0.61
TMEM254-208ENST00000463209 ABCC9O60706 1549 aa18.63■□□□□ 0.57
TMEM254-208ENST00000463209 RB1CC1Q8TDY2 1594 aa17.79■□□□□ 0.44
TMEM254-208ENST00000463209 DCAF8L2P0C7V8 631 aa17.78■□□□□ 0.44
TMEM254-208ENST00000463209 NACADO15069 1562 aa17.71■□□□□ 0.43
TMEM254-208ENST00000463209 ZCCHC6Q5VYS8 1495 aaKnown RBP17.63■□□□□ 0.41
TMEM254-208ENST00000463209 MYO15BQ96JP2 1530 aa17.51■□□□□ 0.39
TMEM254-208ENST00000463209 UNC13AQ9UPW8 1703 aa17.5■□□□□ 0.39
TMEM254-208ENST00000463209 DCAF1Q9Y4B6 1507 aa17.43■□□□□ 0.38
TMEM254-208ENST00000463209 PABPN1Q86U42 306 aaKnown RBP eCLIP17.39■□□□□ 0.37
TMEM254-208ENST00000463209 SCRIBQ14160 1630 aa17.32■□□□□ 0.36
TMEM254-208ENST00000463209 BICRAQ9NZM4 1560 aa17.32■□□□□ 0.36
TMEM254-208ENST00000463209 DNAJC5BQ9UF47 199 aa17.16■□□□□ 0.34
TMEM254-208ENST00000463209 SHROOM4Q9ULL8 1493 aa16.97■□□□□ 0.31
TMEM254-208ENST00000463209 EIF4G1Q04637 1599 aaKnown RBP16.85■□□□□ 0.29
TMEM254-208ENST00000463209 CC2D2AQ9P2K1 1620 aa16.82■□□□□ 0.28
TMEM254-208ENST00000463209 CECR2Q9BXF3 1484 aa16.69■□□□□ 0.26
TMEM254-208ENST00000463209 SMARCA4P51532 1647 aa16.49■□□□□ 0.23
TMEM254-208ENST00000463209 BAZ1AQ9NRL2 1556 aaPredicted RBP16.4■□□□□ 0.22
TMEM254-208ENST00000463209 MROH2BQ7Z745 1585 aa16.38■□□□□ 0.21
TMEM254-208ENST00000463209 ATAD2BQ9ULI0 1458 aa16.37■□□□□ 0.21
TMEM254-208ENST00000463209 NCAPD3P42695 1498 aa16.33■□□□□ 0.2
TMEM254-208ENST00000463209 SMARCA2P51531 1590 aa16.33■□□□□ 0.2
TMEM254-208ENST00000463209 HMGXB3Q12766 1538 aa16.28■□□□□ 0.2
TMEM254-208ENST00000463209 AEBP2Q6ZN18 517 aaPredicted RBP16.27■□□□□ 0.2
TMEM254-208ENST00000463209 BAZ1BQ9UIG0 1483 aaKnown RBP16.26■□□□□ 0.19
TMEM254-208ENST00000463209 PEG3Q9GZU2 1588 aa16.26■□□□□ 0.19
TMEM254-208ENST00000463209 WIZO95785 1651 aa16.23■□□□□ 0.19
TMEM254-208ENST00000463209 CHIC1Q5VXU3 224 aa16.16■□□□□ 0.18
TMEM254-208ENST00000463209 NESP48681 1621 aa16.12■□□□□ 0.17
TMEM254-208ENST00000463209 RSF1Q96T23 1441 aaPredicted RBP16.11■□□□□ 0.17
TMEM254-208ENST00000463209 ERCC6Q03468 1493 aa16.02■□□□□ 0.15
TMEM254-208ENST00000463209 TOP2AP11388 1531 aaKnown RBP15.99■□□□□ 0.15
TMEM254-208ENST00000463209 LAMC3Q9Y6N6 1575 aa15.95■□□□□ 0.14
TMEM254-208ENST00000463209 KIF21AQ7Z4S6 1674 aa15.94■□□□□ 0.14
TMEM254-208ENST00000463209 THOC2Q8NI27 1593 aaKnown RBP15.87■□□□□ 0.13
TMEM254-208ENST00000463209 CADPSQ9ULU8 1353 aa15.86■□□□□ 0.13
TMEM254-208ENST00000463209 CUX2O14529 1486 aa15.81■□□□□ 0.12
TMEM254-208ENST00000463209 CCDC88BA6NC98 1476 aa15.8■□□□□ 0.12
TMEM254-208ENST00000463209 PDS5BQ9NTI5 1447 aa15.8■□□□□ 0.12
TMEM254-208ENST00000463209 CFTRP13569 1480 aa15.76■□□□□ 0.11
TMEM254-208ENST00000463209 FANCD2Q9BXW9 1451 aa15.73■□□□□ 0.11
TMEM254-208ENST00000463209 MRC2Q9UBG0 1479 aa15.71■□□□□ 0.11
TMEM254-208ENST00000463209 CEP164Q9UPV0 1460 aa15.71■□□□□ 0.11
TMEM254-208ENST00000463209 PRDM2Q13029 1718 aa15.71■□□□□ 0.11
TMEM254-208ENST00000463209 SUPT5HO00267 1087 aaKnown RBP15.69■□□□□ 0.1
TMEM254-208ENST00000463209 WDR62O43379 1518 aa15.68■□□□□ 0.1
TMEM254-208ENST00000463209 URB2Q14146 1524 aaKnown RBP15.63■□□□□ 0.09
TMEM254-208ENST00000463209 TOPBP1Q92547 1522 aa15.48■□□□□ 0.07
TMEM254-208ENST00000463209 DNMBPQ6XZF7 1577 aa15.45■□□□□ 0.06
TMEM254-208ENST00000463209 DNAJC5Q9H3Z4 198 aa15.42■□□□□ 0.06
TMEM254-208ENST00000463209 ZNF608Q9ULD9 1512 aaPredicted RBP15.4■□□□□ 0.06
TMEM254-208ENST00000463209 CUX1P39880 1505 aa15.37■□□□□ 0.05
TMEM254-208ENST00000463209 ABCC8Q09428 1581 aa15.36■□□□□ 0.05
TMEM254-208ENST00000463209 IFT140Q96RY7 1462 aa15.36■□□□□ 0.05
TMEM254-208ENST00000463209 POLA1P09884 1462 aaPredicted RBP15.34■□□□□ 0.05
TMEM254-208ENST00000463209 EIF4G3O43432 1585 aaKnown RBP15.34■□□□□ 0.05
TMEM254-208ENST00000463209 TARBP1Q13395 1621 aaKnown RBP15.34■□□□□ 0.05
TMEM254-208ENST00000463209 RAD54L2Q9Y4B4 1467 aa15.33■□□□□ 0.04
TMEM254-208ENST00000463209 FGD5Q6ZNL6 1462 aa15.32■□□□□ 0.04
TMEM254-208ENST00000463209 AQRO60306 1485 aaKnown RBP eCLIP15.27■□□□□ 0.03
TMEM254-208ENST00000463209 SOGA1O94964 1423 aa15.25■□□□□ 0.03
TMEM254-208ENST00000463209 SYNJ1O43426 1573 aa15.24■□□□□ 0.03
TMEM254-208ENST00000463209 WDR97A6NE52 1622 aa15.23■□□□□ 0.03
TMEM254-208ENST00000463209 TDRD9Q8NDG6 1382 aaKnown RBP15.22■□□□□ 0.03
TMEM254-208ENST00000463209 BIVM-ERCC5R4GMW8 1640 aa15.2■□□□□ 0.02
TMEM254-208ENST00000463209 CHD1O14646 1710 aa15.19■□□□□ 0.02
TMEM254-208ENST00000463209 WRNQ14191 1432 aaPredicted RBP eCLIP15.17■□□□□ 0.02
TMEM254-208ENST00000463209 TOP2BQ02880 1626 aa15.17■□□□□ 0.02
TMEM254-208ENST00000463209 PBRM1Q86U86 1689 aa15.15■□□□□ 0.02
TMEM254-208ENST00000463209 SNAPC4Q5SXM2 1469 aa15.14■□□□□ 0.01
TMEM254-208ENST00000463209 OSCARQ8IYS5 282 aa15.12■□□□□ 0.01
TMEM254-208ENST00000463209 ABCA5Q8WWZ7 1642 aa15.12■□□□□ 0.01
TMEM254-208ENST00000463209 FBLN2P98095 1184 aa15.1■□□□□ 0.01
TMEM254-208ENST00000463209 ABCA10Q8WWZ4 1543 aa15.1■□□□□ 0.01
TMEM254-208ENST00000463209 GAPVD1Q14C86 1478 aa15.08■□□□□ 0.01
TMEM254-208ENST00000463209 GRIN2BQ13224 1484 aa15.08■□□□□ 0
TMEM254-208ENST00000463209 MAGI1Q96QZ7 1491 aaPredicted RBP15.03■□□□□ -0
TMEM254-208ENST00000463209 RIMBP3CA6NJZ7 1639 aa15.02□□□□□ -0.01
TMEM254-208ENST00000463209 RIMBP3BA6NNM3 1639 aa15.02□□□□□ -0.01
TMEM254-208ENST00000463209 RIMBP3Q9UFD9 1639 aa15.02□□□□□ -0.01
TMEM254-208ENST00000463209 TRIM41Q8WV44 630 aa15□□□□□ -0.01
TMEM254-208ENST00000463209 SYNJ2O15056 1496 aa15□□□□□ -0.01
TMEM254-208ENST00000463209 ADAMTS12P58397 1594 aa14.99□□□□□ -0.01
TMEM254-208ENST00000463209 CHMP7Q8WUX9 453 aaPredicted RBP14.98□□□□□ -0.01
TMEM254-208ENST00000463209 ARHGEF11O15085 1522 aa14.97□□□□□ -0.01
TMEM254-208ENST00000463209 CLASP1Q7Z460 1538 aa14.95□□□□□ -0.02
TMEM254-208ENST00000463209 ERICH3Q5RHP9 1530 aa14.92□□□□□ -0.02
TMEM254-208ENST00000463209 GRIN2AQ12879 1464 aa14.91□□□□□ -0.02
TMEM254-208ENST00000463209 CEP170Q5SW79 1584 aa14.9□□□□□ -0.02
TMEM254-208ENST00000463209 FHAD1B1AJZ9 1412 aa14.88□□□□□ -0.03
TMEM254-208ENST00000463209 ARAP1Q96P48 1450 aa14.85□□□□□ -0.03
TMEM254-208ENST00000463209 KIF27Q86VH2 1401 aa14.84□□□□□ -0.03
TMEM254-208ENST00000463209 ERCC6L2Q5T890 1561 aa14.82□□□□□ -0.04
TMEM254-208ENST00000463209 NUP160Q12769 1436 aa14.82□□□□□ -0.04
TMEM254-208ENST00000463209 CYB5RLQ6IPT4 315 aa14.81□□□□□ -0.04
TMEM254-208ENST00000463209 RUSC2Q8N2Y8 1516 aa14.81□□□□□ -0.04
TMEM254-208ENST00000463209 CUL7Q14999 1698 aa14.8□□□□□ -0.04
TMEM254-208ENST00000463209 IGF1RP08069 1367 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms