RNA–Protein interactions for RNA: ENST00000463184.1

VARS-221, Transcript of valyl-tRNA synthetase, humanhuman

TSL 2

Gene VARS, Length 619 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-221ENST00000463184 NISCHQ9Y2I1 1504 aa49.71■■■■■ 5.55
VARS-221ENST00000463184 ABCC9O60706 1549 aa44.79■■■■■ 4.76
VARS-221ENST00000463184 CCDC180Q9P1Z9 1646 aa44.63■■■■■ 4.73
VARS-221ENST00000463184 RB1CC1Q8TDY2 1594 aa42.59■■■■■ 4.41
VARS-221ENST00000463184 NACADO15069 1562 aa42.29■■■■■ 4.36
VARS-221ENST00000463184 DNAJC5BQ9UF47 199 aa42.18■■■■■ 4.34
VARS-221ENST00000463184 DCAF8L2P0C7V8 631 aa42.08■■■■■ 4.33
VARS-221ENST00000463184 PABPN1Q86U42 306 aaKnown RBP eCLIP41.71■■■■■ 4.277e-9■■■■■ 29.6
VARS-221ENST00000463184 MYO15BQ96JP2 1530 aa41.69■■■■■ 4.26
VARS-221ENST00000463184 UNC13AQ9UPW8 1703 aa41.53■■■■■ 4.24
VARS-221ENST00000463184 BICRAQ9NZM4 1560 aa41.32■■■■■ 4.2
VARS-221ENST00000463184 ZCCHC6Q5VYS8 1495 aaKnown RBP41.15■■■■■ 4.18
VARS-221ENST00000463184 DCAF1Q9Y4B6 1507 aa41.08■■■■■ 4.17
VARS-221ENST00000463184 SHROOM4Q9ULL8 1493 aa40.83■■■■■ 4.13
VARS-221ENST00000463184 SCRIBQ14160 1630 aa40.64■■■■■ 4.1
VARS-221ENST00000463184 CC2D2AQ9P2K1 1620 aa40.45■■■■■ 4.07
VARS-221ENST00000463184 CECR2Q9BXF3 1484 aa40.39■■■■■ 4.06
VARS-221ENST00000463184 EIF4G1Q04637 1599 aaKnown RBP40.34■■■■■ 4.05
VARS-221ENST00000463184 NCAPD3P42695 1498 aa39.06■■■■□ 3.84
VARS-221ENST00000463184 ATAD2BQ9ULI0 1458 aa38.9■■■■□ 3.82
VARS-221ENST00000463184 DNAJC5Q9H3Z4 198 aa38.88■■■■□ 3.81
VARS-221ENST00000463184 SMARCA2P51531 1590 aa38.78■■■■□ 3.8
VARS-221ENST00000463184 SMARCA4P51532 1647 aa38.78■■■■□ 3.8
VARS-221ENST00000463184 HMGXB3Q12766 1538 aa38.72■■■■□ 3.79
VARS-221ENST00000463184 CUX2O14529 1486 aa38.71■■■■□ 3.79
VARS-221ENST00000463184 ERCC6Q03468 1493 aa38.71■■■■□ 3.79
VARS-221ENST00000463184 BAZ1AQ9NRL2 1556 aaPredicted RBP38.61■■■■□ 3.77
VARS-221ENST00000463184 BAZ1BQ9UIG0 1483 aaKnown RBP38.51■■■■□ 3.76
VARS-221ENST00000463184 PEG3Q9GZU2 1588 aa38.44■■■■□ 3.74
VARS-221ENST00000463184 NESP48681 1621 aa38.42■■■■□ 3.74
VARS-221ENST00000463184 MROH2BQ7Z745 1585 aa38.28■■■■□ 3.72
VARS-221ENST00000463184 LAMC3Q9Y6N6 1575 aa38.17■■■■□ 3.7
VARS-221ENST00000463184 THOC2Q8NI27 1593 aaKnown RBP38.05■■■■□ 3.68
VARS-221ENST00000463184 PDS5BQ9NTI5 1447 aa38.01■■■■□ 3.68
VARS-221ENST00000463184 CADPSQ9ULU8 1353 aa37.88■■■■□ 3.65
VARS-221ENST00000463184 KIF21AQ7Z4S6 1674 aa37.88■■■■□ 3.65
VARS-221ENST00000463184 WIZO95785 1651 aa37.79■■■■□ 3.64
VARS-221ENST00000463184 MRC2Q9UBG0 1479 aa37.64■■■■□ 3.62
VARS-221ENST00000463184 WDR62O43379 1518 aa37.53■■■■□ 3.6
VARS-221ENST00000463184 RSF1Q96T23 1441 aaPredicted RBP37.47■■■■□ 3.59
VARS-221ENST00000463184 CEP164Q9UPV0 1460 aa37.45■■■■□ 3.59
VARS-221ENST00000463184 FANCD2Q9BXW9 1451 aa37.41■■■■□ 3.58
VARS-221ENST00000463184 CFTRP13569 1480 aa37.39■■■■□ 3.58
VARS-221ENST00000463184 TOP2AP11388 1531 aaKnown RBP37.33■■■■□ 3.57
VARS-221ENST00000463184 URB2Q14146 1524 aaKnown RBP37.09■■■■□ 3.53
VARS-221ENST00000463184 TRIM41Q8WV44 630 aa37.08■■■■□ 3.53
VARS-221ENST00000463184 OSCARQ8IYS5 282 aa36.97■■■■□ 3.51
VARS-221ENST00000463184 CCDC88BA6NC98 1476 aa36.94■■■■□ 3.5
VARS-221ENST00000463184 PRDM2Q13029 1718 aa36.91■■■■□ 3.5
VARS-221ENST00000463184 IFT140Q96RY7 1462 aa36.74■■■■□ 3.47
VARS-221ENST00000463184 TOPBP1Q92547 1522 aa36.68■■■■□ 3.46
VARS-221ENST00000463184 ABCC8Q09428 1581 aa36.65■■■■□ 3.46
VARS-221ENST00000463184 ZNF608Q9ULD9 1512 aaPredicted RBP36.64■■■■□ 3.46
VARS-221ENST00000463184 DNMBPQ6XZF7 1577 aa36.52■■■■□ 3.44
VARS-221ENST00000463184 EIF4G3O43432 1585 aaKnown RBP36.4■■■■□ 3.42
VARS-221ENST00000463184 RIMBP3CA6NJZ7 1639 aa36.38■■■■□ 3.41
VARS-221ENST00000463184 RIMBP3BA6NNM3 1639 aa36.38■■■■□ 3.41
VARS-221ENST00000463184 RIMBP3Q9UFD9 1639 aa36.38■■■■□ 3.41
VARS-221ENST00000463184 TARBP1Q13395 1621 aaKnown RBP36.34■■■■□ 3.41
VARS-221ENST00000463184 AQRO60306 1485 aaKnown RBP eCLIP36.33■■■■□ 3.41
VARS-221ENST00000463184 POLA1P09884 1462 aaPredicted RBP36.29■■■■□ 3.4
VARS-221ENST00000463184 ARHGEF11O15085 1522 aa36.29■■■■□ 3.4
VARS-221ENST00000463184 SOGA1O94964 1423 aa36.17■■■■□ 3.38
VARS-221ENST00000463184 RAD54L2Q9Y4B4 1467 aa36.16■■■■□ 3.38
VARS-221ENST00000463184 FBLN2P98095 1184 aa36.15■■■■□ 3.38
VARS-221ENST00000463184 CHD1O14646 1710 aa36.14■■■■□ 3.38
VARS-221ENST00000463184 CYB5RLQ6IPT4 315 aa36.09■■■■□ 3.37
VARS-221ENST00000463184 TDRD9Q8NDG6 1382 aaKnown RBP36.09■■■■□ 3.37
VARS-221ENST00000463184 FGD5Q6ZNL6 1462 aa36.04■■■■□ 3.36
VARS-221ENST00000463184 WDR97A6NE52 1622 aa36■■■■□ 3.35
VARS-221ENST00000463184 CUX1P39880 1505 aa35.98■■■■□ 3.35
VARS-221ENST00000463184 SNAPC4Q5SXM2 1469 aa35.93■■■■□ 3.34
VARS-221ENST00000463184 ARAP1Q96P48 1450 aa35.92■■■■□ 3.34
VARS-221ENST00000463184 CHMP7Q8WUX9 453 aaPredicted RBP35.89■■■■□ 3.34
VARS-221ENST00000463184 MAGI1Q96QZ7 1491 aaPredicted RBP35.86■■■■□ 3.33
VARS-221ENST00000463184 GRIN2BQ13224 1484 aa35.85■■■■□ 3.33
VARS-221ENST00000463184 CLASP1Q7Z460 1538 aa35.78■■■■□ 3.32
VARS-221ENST00000463184 SYNJ1O43426 1573 aa35.76■■■■□ 3.32
VARS-221ENST00000463184 SYNJ2O15056 1496 aa35.74■■■■□ 3.31
VARS-221ENST00000463184 SUPT5HO00267 1087 aaKnown RBP35.73■■■■□ 3.31
VARS-221ENST00000463184 TRHP20396 242 aaPredicted RBP35.73■■■■□ 3.31
VARS-221ENST00000463184 GAPVD1Q14C86 1478 aa35.71■■■■□ 3.31
VARS-221ENST00000463184 ABCA10Q8WWZ4 1543 aa35.65■■■■□ 3.3
VARS-221ENST00000463184 PBRM1Q86U86 1689 aa35.62■■■■□ 3.29
VARS-221ENST00000463184 ABCA5Q8WWZ7 1642 aa35.55■■■■□ 3.28
VARS-221ENST00000463184 WRNQ14191 1432 aaPredicted RBP eCLIP35.5■■■■□ 3.27
VARS-221ENST00000463184 GRIN2AQ12879 1464 aa35.37■■■■□ 3.25
VARS-221ENST00000463184 TOP2BQ02880 1626 aa35.36■■■■□ 3.25
VARS-221ENST00000463184 BIVM-ERCC5R4GMW8 1640 aa35.35■■■■□ 3.25
VARS-221ENST00000463184 ADAMTS12P58397 1594 aa35.3■■■■□ 3.24
VARS-221ENST00000463184 NUP160Q12769 1436 aa35.28■■■■□ 3.24
VARS-221ENST00000463184 FHAD1B1AJZ9 1412 aa35.26■■■■□ 3.24
VARS-221ENST00000463184 CEP170Q5SW79 1584 aa35.21■■■■□ 3.23
VARS-221ENST00000463184 ERICH3Q5RHP9 1530 aa35.2■■■■□ 3.23
VARS-221ENST00000463184 ERCC6L2Q5T890 1561 aa35.17■■■■□ 3.22
VARS-221ENST00000463184 SHROOM2Q13796 1616 aa35.09■■■■□ 3.21
VARS-221ENST00000463184 JPH4Q96JJ6 628 aa34.97■■■■□ 3.19
VARS-221ENST00000463184 PRG4Q92954 1404 aaPredicted RBP34.95■■■■□ 3.19
VARS-221ENST00000463184 AEBP2Q6ZN18 517 aaPredicted RBP34.81■■■■□ 3.16
VARS-221ENST00000463184 RUSC2Q8N2Y8 1516 aa34.79■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms