RNA–Protein interactions for RNA: ENST00000463172.5

HDAC1-203, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 895 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-203ENST00000463172 NISCHQ9Y2I1 1504 aa32.02■■■□□ 2.72
HDAC1-203ENST00000463172 CCDC180Q9P1Z9 1646 aa28.65■■■□□ 2.18
HDAC1-203ENST00000463172 ABCC9O60706 1549 aa28.18■■■□□ 2.1
HDAC1-203ENST00000463172 RB1CC1Q8TDY2 1594 aa27.09■■□□□ 1.93
HDAC1-203ENST00000463172 NACADO15069 1562 aa26.99■■□□□ 1.91
HDAC1-203ENST00000463172 DCAF8L2P0C7V8 631 aa26.9■■□□□ 1.9
HDAC1-203ENST00000463172 MYO15BQ96JP2 1530 aa26.74■■□□□ 1.87
HDAC1-203ENST00000463172 ZCCHC6Q5VYS8 1495 aaKnown RBP26.62■■□□□ 1.85
HDAC1-203ENST00000463172 DCAF1Q9Y4B6 1507 aa26.53■■□□□ 1.84
HDAC1-203ENST00000463172 UNC13AQ9UPW8 1703 aa26.41■■□□□ 1.82
HDAC1-203ENST00000463172 PABPN1Q86U42 306 aaKnown RBP eCLIP26.27■■□□□ 1.8
HDAC1-203ENST00000463172 BICRAQ9NZM4 1560 aa26.15■■□□□ 1.78
HDAC1-203ENST00000463172 SCRIBQ14160 1630 aa26.06■■□□□ 1.76
HDAC1-203ENST00000463172 SHROOM4Q9ULL8 1493 aa26.02■■□□□ 1.76
HDAC1-203ENST00000463172 DNAJC5BQ9UF47 199 aa25.97■■□□□ 1.75
HDAC1-203ENST00000463172 EIF4G1Q04637 1599 aaKnown RBP25.55■■□□□ 1.68
HDAC1-203ENST00000463172 CC2D2AQ9P2K1 1620 aa25.5■■□□□ 1.67
HDAC1-203ENST00000463172 CECR2Q9BXF3 1484 aa25.38■■□□□ 1.65
HDAC1-203ENST00000463172 SMARCA4P51532 1647 aa24.91■■□□□ 1.58
HDAC1-203ENST00000463172 BAZ1AQ9NRL2 1556 aaPredicted RBP24.89■■□□□ 1.58
HDAC1-203ENST00000463172 SMARCA2P51531 1590 aa24.85■■□□□ 1.57
HDAC1-203ENST00000463172 NCAPD3P42695 1498 aa24.85■■□□□ 1.57
HDAC1-203ENST00000463172 ATAD2BQ9ULI0 1458 aa24.82■■□□□ 1.56
HDAC1-203ENST00000463172 HMGXB3Q12766 1538 aa24.74■■□□□ 1.55
HDAC1-203ENST00000463172 PEG3Q9GZU2 1588 aa24.67■■□□□ 1.54
HDAC1-203ENST00000463172 BAZ1BQ9UIG0 1483 aaKnown RBP24.65■■□□□ 1.54
HDAC1-203ENST00000463172 MROH2BQ7Z745 1585 aa24.63■■□□□ 1.53
HDAC1-203ENST00000463172 ERCC6Q03468 1493 aa24.4■■□□□ 1.5
HDAC1-203ENST00000463172 WIZO95785 1651 aa24.38■■□□□ 1.49
HDAC1-203ENST00000463172 LAMC3Q9Y6N6 1575 aa24.29■■□□□ 1.48
HDAC1-203ENST00000463172 RSF1Q96T23 1441 aaPredicted RBP24.27■■□□□ 1.48
HDAC1-203ENST00000463172 NESP48681 1621 aa24.27■■□□□ 1.48
HDAC1-203ENST00000463172 CUX2O14529 1486 aa24.21■■□□□ 1.47
HDAC1-203ENST00000463172 PDS5BQ9NTI5 1447 aa24.16■■□□□ 1.46
HDAC1-203ENST00000463172 TOP2AP11388 1531 aaKnown RBP24.15■■□□□ 1.46
HDAC1-203ENST00000463172 CADPSQ9ULU8 1353 aa24.13■■□□□ 1.45
HDAC1-203ENST00000463172 KIF21AQ7Z4S6 1674 aa24.05■■□□□ 1.44
HDAC1-203ENST00000463172 THOC2Q8NI27 1593 aaKnown RBP24■■□□□ 1.43
HDAC1-203ENST00000463172 CFTRP13569 1480 aa23.92■■□□□ 1.42
HDAC1-203ENST00000463172 MRC2Q9UBG0 1479 aa23.88■■□□□ 1.41
HDAC1-203ENST00000463172 CEP164Q9UPV0 1460 aa23.88■■□□□ 1.41
HDAC1-203ENST00000463172 FANCD2Q9BXW9 1451 aa23.86■■□□□ 1.41
HDAC1-203ENST00000463172 CCDC88BA6NC98 1476 aa23.82■■□□□ 1.4
HDAC1-203ENST00000463172 PRDM2Q13029 1718 aa23.81■■□□□ 1.4
HDAC1-203ENST00000463172 WDR62O43379 1518 aa23.79■■□□□ 1.4
HDAC1-203ENST00000463172 DNAJC5Q9H3Z4 198 aa23.7■■□□□ 1.38
HDAC1-203ENST00000463172 URB2Q14146 1524 aaKnown RBP23.59■■□□□ 1.37
HDAC1-203ENST00000463172 SUPT5HO00267 1087 aaKnown RBP23.53■■□□□ 1.36
HDAC1-203ENST00000463172 ABCC8Q09428 1581 aa23.52■■□□□ 1.36
HDAC1-203ENST00000463172 TOPBP1Q92547 1522 aa23.43■■□□□ 1.34
HDAC1-203ENST00000463172 DNMBPQ6XZF7 1577 aa23.42■■□□□ 1.34
HDAC1-203ENST00000463172 IFT140Q96RY7 1462 aa23.4■■□□□ 1.34
HDAC1-203ENST00000463172 POLA1P09884 1462 aaPredicted RBP23.21■■□□□ 1.31
HDAC1-203ENST00000463172 ZNF608Q9ULD9 1512 aaPredicted RBP23.21■■□□□ 1.31
HDAC1-203ENST00000463172 TARBP1Q13395 1621 aaKnown RBP23.18■■□□□ 1.3
HDAC1-203ENST00000463172 EIF4G3O43432 1585 aaKnown RBP23.18■■□□□ 1.3
HDAC1-203ENST00000463172 OSCARQ8IYS5 282 aa23.17■■□□□ 1.3
HDAC1-203ENST00000463172 SOGA1O94964 1423 aa23.14■■□□□ 1.29
HDAC1-203ENST00000463172 CUX1P39880 1505 aa23.13■■□□□ 1.29
HDAC1-203ENST00000463172 FGD5Q6ZNL6 1462 aa23.12■■□□□ 1.29
HDAC1-203ENST00000463172 WDR97A6NE52 1622 aa23.1■■□□□ 1.29
HDAC1-203ENST00000463172 AQRO60306 1485 aaKnown RBP eCLIP23.08■■□□□ 1.292e-11■■■□□ 17.7
HDAC1-203ENST00000463172 RAD54L2Q9Y4B4 1467 aa23.08■■□□□ 1.29
HDAC1-203ENST00000463172 TDRD9Q8NDG6 1382 aaKnown RBP23.01■■□□□ 1.27
HDAC1-203ENST00000463172 WRNQ14191 1432 aaPredicted RBP eCLIP22.95■■□□□ 1.26
HDAC1-203ENST00000463172 CHD1O14646 1710 aa22.94■■□□□ 1.26
HDAC1-203ENST00000463172 FBLN2P98095 1184 aa22.93■■□□□ 1.26
HDAC1-203ENST00000463172 TOP2BQ02880 1626 aa22.93■■□□□ 1.26
HDAC1-203ENST00000463172 BIVM-ERCC5R4GMW8 1640 aa22.93■■□□□ 1.26
HDAC1-203ENST00000463172 GRIN2BQ13224 1484 aa22.92■■□□□ 1.26
HDAC1-203ENST00000463172 ABCA10Q8WWZ4 1543 aa22.91■■□□□ 1.26
HDAC1-203ENST00000463172 MAGI1Q96QZ7 1491 aaPredicted RBP22.9■■□□□ 1.26
HDAC1-203ENST00000463172 SNAPC4Q5SXM2 1469 aa22.89■■□□□ 1.25
HDAC1-203ENST00000463172 GAPVD1Q14C86 1478 aa22.87■■□□□ 1.25
HDAC1-203ENST00000463172 PBRM1Q86U86 1689 aa22.86■■□□□ 1.25
HDAC1-203ENST00000463172 SYNJ1O43426 1573 aa22.85■■□□□ 1.25
HDAC1-203ENST00000463172 CHMP7Q8WUX9 453 aaPredicted RBP22.84■■□□□ 1.25
HDAC1-203ENST00000463172 TRIM41Q8WV44 630 aa22.83■■□□□ 1.25
HDAC1-203ENST00000463172 ABCA5Q8WWZ7 1642 aa22.82■■□□□ 1.24
HDAC1-203ENST00000463172 SYNJ2O15056 1496 aa22.79■■□□□ 1.24
HDAC1-203ENST00000463172 RIMBP3CA6NJZ7 1639 aa22.78■■□□□ 1.24
HDAC1-203ENST00000463172 RIMBP3BA6NNM3 1639 aa22.78■■□□□ 1.24
HDAC1-203ENST00000463172 RIMBP3Q9UFD9 1639 aa22.78■■□□□ 1.24
HDAC1-203ENST00000463172 ARHGEF11O15085 1522 aa22.74■■□□□ 1.23
HDAC1-203ENST00000463172 ERICH3Q5RHP9 1530 aa22.66■■□□□ 1.22
HDAC1-203ENST00000463172 CLASP1Q7Z460 1538 aa22.65■■□□□ 1.22
HDAC1-203ENST00000463172 ADAMTS12P58397 1594 aa22.63■■□□□ 1.21
HDAC1-203ENST00000463172 FHAD1B1AJZ9 1412 aa22.62■■□□□ 1.21
HDAC1-203ENST00000463172 GRIN2AQ12879 1464 aa22.6■■□□□ 1.21
HDAC1-203ENST00000463172 CYB5RLQ6IPT4 315 aa22.56■■□□□ 1.2
HDAC1-203ENST00000463172 KIF27Q86VH2 1401 aa22.53■■□□□ 1.2
HDAC1-203ENST00000463172 ARAP1Q96P48 1450 aa22.51■■□□□ 1.19
HDAC1-203ENST00000463172 NUP160Q12769 1436 aa22.48■■□□□ 1.19
HDAC1-203ENST00000463172 CEP170Q5SW79 1584 aa22.46■■□□□ 1.19
HDAC1-203ENST00000463172 CUL7Q14999 1698 aa22.44■■□□□ 1.18
HDAC1-203ENST00000463172 IGF1RP08069 1367 aa22.38■■□□□ 1.17
HDAC1-203ENST00000463172 SHROOM2Q13796 1616 aa22.36■■□□□ 1.17
HDAC1-203ENST00000463172 RUSC2Q8N2Y8 1516 aa22.3■■□□□ 1.16
HDAC1-203ENST00000463172 CARMIL1Q5VZK9 1371 aa22.29■■□□□ 1.16
HDAC1-203ENST00000463172 JPH4Q96JJ6 628 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms