RNA–Protein interactions for RNA: ENST00000463020.1

SND1-203, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 793 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-203ENST00000463020 NISCHQ9Y2I1 1504 aa40.05■■■■■ 4
SND1-203ENST00000463020 ABCC9O60706 1549 aa36.41■■■■□ 3.42
SND1-203ENST00000463020 CCDC180Q9P1Z9 1646 aa35.98■■■■□ 3.35
SND1-203ENST00000463020 DNAJC5BQ9UF47 199 aa34.53■■■■□ 3.12
SND1-203ENST00000463020 RB1CC1Q8TDY2 1594 aa34.39■■■■□ 3.1
SND1-203ENST00000463020 NACADO15069 1562 aa34.08■■■■□ 3.05
SND1-203ENST00000463020 DCAF8L2P0C7V8 631 aa33.89■■■■□ 3.02
SND1-203ENST00000463020 PABPN1Q86U42 306 aaKnown RBP eCLIP33.88■■■■□ 3.01
SND1-203ENST00000463020 UNC13AQ9UPW8 1703 aa33.74■■■□□ 2.99
SND1-203ENST00000463020 BICRAQ9NZM4 1560 aa33.57■■■□□ 2.96
SND1-203ENST00000463020 MYO15BQ96JP2 1530 aa33.49■■■□□ 2.95
SND1-203ENST00000463020 ZCCHC6Q5VYS8 1495 aaKnown RBP33.15■■■□□ 2.9
SND1-203ENST00000463020 DCAF1Q9Y4B6 1507 aa32.98■■■□□ 2.87
SND1-203ENST00000463020 SCRIBQ14160 1630 aa32.91■■■□□ 2.86
SND1-203ENST00000463020 SHROOM4Q9ULL8 1493 aa32.86■■■□□ 2.85
SND1-203ENST00000463020 CC2D2AQ9P2K1 1620 aa32.85■■■□□ 2.85
SND1-203ENST00000463020 CECR2Q9BXF3 1484 aa32.78■■■□□ 2.84
SND1-203ENST00000463020 EIF4G1Q04637 1599 aaKnown RBP32.7■■■□□ 2.82
SND1-203ENST00000463020 DNAJC5Q9H3Z4 198 aa31.75■■■□□ 2.67
SND1-203ENST00000463020 NCAPD3P42695 1498 aa31.51■■■□□ 2.63
SND1-203ENST00000463020 ATAD2BQ9ULI0 1458 aa31.42■■■□□ 2.62
SND1-203ENST00000463020 CUX2O14529 1486 aa31.38■■■□□ 2.61
SND1-203ENST00000463020 ERCC6Q03468 1493 aa31.35■■■□□ 2.61
SND1-203ENST00000463020 SMARCA4P51532 1647 aa31.31■■■□□ 2.6
SND1-203ENST00000463020 NESP48681 1621 aa31.26■■■□□ 2.59
SND1-203ENST00000463020 HMGXB3Q12766 1538 aa31.24■■■□□ 2.59
SND1-203ENST00000463020 SMARCA2P51531 1590 aa31.22■■■□□ 2.59
SND1-203ENST00000463020 BAZ1BQ9UIG0 1483 aaKnown RBP31.06■■■□□ 2.56
SND1-203ENST00000463020 BAZ1AQ9NRL2 1556 aaPredicted RBP31.05■■■□□ 2.56
SND1-203ENST00000463020 PEG3Q9GZU2 1588 aa30.98■■■□□ 2.55
SND1-203ENST00000463020 THOC2Q8NI27 1593 aaKnown RBP30.94■■■□□ 2.54
SND1-203ENST00000463020 MROH2BQ7Z745 1585 aa30.93■■■□□ 2.54
SND1-203ENST00000463020 LAMC3Q9Y6N6 1575 aa30.81■■■□□ 2.52
SND1-203ENST00000463020 KIF21AQ7Z4S6 1674 aa30.78■■■□□ 2.52
SND1-203ENST00000463020 PDS5BQ9NTI5 1447 aa30.61■■■□□ 2.49
SND1-203ENST00000463020 WIZO95785 1651 aa30.54■■■□□ 2.48
SND1-203ENST00000463020 CADPSQ9ULU8 1353 aa30.54■■■□□ 2.48
SND1-203ENST00000463020 MRC2Q9UBG0 1479 aa30.44■■■□□ 2.46
SND1-203ENST00000463020 WDR62O43379 1518 aa30.41■■■□□ 2.46
SND1-203ENST00000463020 TRIM41Q8WV44 630 aa30.27■■■□□ 2.44
SND1-203ENST00000463020 CEP164Q9UPV0 1460 aa30.25■■■□□ 2.43
SND1-203ENST00000463020 FANCD2Q9BXW9 1451 aa30.23■■■□□ 2.43
SND1-203ENST00000463020 RSF1Q96T23 1441 aaPredicted RBP30.15■■■□□ 2.42
SND1-203ENST00000463020 CFTRP13569 1480 aa30.15■■■□□ 2.42
SND1-203ENST00000463020 TOP2AP11388 1531 aaKnown RBP30.06■■■□□ 2.4
SND1-203ENST00000463020 URB2Q14146 1524 aaKnown RBP30.06■■■□□ 2.4
SND1-203ENST00000463020 OSCARQ8IYS5 282 aa29.87■■■□□ 2.37
SND1-203ENST00000463020 ZNF608Q9ULD9 1512 aaPredicted RBP29.77■■■□□ 2.36
SND1-203ENST00000463020 CCDC88BA6NC98 1476 aa29.77■■■□□ 2.36
SND1-203ENST00000463020 PRDM2Q13029 1718 aa29.76■■■□□ 2.35
SND1-203ENST00000463020 RIMBP3CA6NJZ7 1639 aa29.64■■■□□ 2.34
SND1-203ENST00000463020 RIMBP3BA6NNM3 1639 aa29.64■■■□□ 2.34
SND1-203ENST00000463020 RIMBP3Q9UFD9 1639 aa29.64■■■□□ 2.34
SND1-203ENST00000463020 IFT140Q96RY7 1462 aa29.64■■■□□ 2.34
SND1-203ENST00000463020 TOPBP1Q92547 1522 aa29.64■■■□□ 2.34
SND1-203ENST00000463020 EIF4G3O43432 1585 aaKnown RBP29.52■■■□□ 2.32
SND1-203ENST00000463020 ARHGEF11O15085 1522 aa29.5■■■□□ 2.31
SND1-203ENST00000463020 DNMBPQ6XZF7 1577 aa29.47■■■□□ 2.31
SND1-203ENST00000463020 AQRO60306 1485 aaKnown RBP eCLIP29.42■■■□□ 2.31e-6■■□□□ 11.4
SND1-203ENST00000463020 TARBP1Q13395 1621 aaKnown RBP29.42■■■□□ 2.3
SND1-203ENST00000463020 ABCC8Q09428 1581 aa29.38■■■□□ 2.29
SND1-203ENST00000463020 CHD1O14646 1710 aa29.35■■■□□ 2.29
SND1-203ENST00000463020 POLA1P09884 1462 aaPredicted RBP29.32■■■□□ 2.28
SND1-203ENST00000463020 RAD54L2Q9Y4B4 1467 aa29.28■■■□□ 2.28
SND1-203ENST00000463020 CYB5RLQ6IPT4 315 aa29.27■■■□□ 2.28
SND1-203ENST00000463020 ARAP1Q96P48 1450 aa29.23■■■□□ 2.27
SND1-203ENST00000463020 FBLN2P98095 1184 aa29.19■■■□□ 2.26
SND1-203ENST00000463020 TDRD9Q8NDG6 1382 aaKnown RBP29.18■■■□□ 2.26
SND1-203ENST00000463020 SOGA1O94964 1423 aa29.13■■■□□ 2.25
SND1-203ENST00000463020 FGD5Q6ZNL6 1462 aa29.1■■■□□ 2.25
SND1-203ENST00000463020 SNAPC4Q5SXM2 1469 aa29.09■■■□□ 2.25
SND1-203ENST00000463020 CUX1P39880 1505 aa29.07■■■□□ 2.24
SND1-203ENST00000463020 CLASP1Q7Z460 1538 aa29.03■■■□□ 2.24
SND1-203ENST00000463020 TRHP20396 242 aaPredicted RBP28.99■■■□□ 2.23
SND1-203ENST00000463020 WDR97A6NE52 1622 aa28.93■■■□□ 2.22
SND1-203ENST00000463020 MAGI1Q96QZ7 1491 aaPredicted RBP28.91■■■□□ 2.22
SND1-203ENST00000463020 GRIN2BQ13224 1484 aa28.9■■■□□ 2.22
SND1-203ENST00000463020 CHMP7Q8WUX9 453 aaPredicted RBP28.89■■■□□ 2.22
SND1-203ENST00000463020 SYNJ1O43426 1573 aa28.87■■■□□ 2.21
SND1-203ENST00000463020 SYNJ2O15056 1496 aa28.85■■■□□ 2.21
SND1-203ENST00000463020 PBRM1Q86U86 1689 aa28.8■■■□□ 2.2
SND1-203ENST00000463020 GAPVD1Q14C86 1478 aa28.78■■■□□ 2.2
SND1-203ENST00000463020 ABCA5Q8WWZ7 1642 aa28.74■■■□□ 2.19
SND1-203ENST00000463020 ABCA10Q8WWZ4 1543 aa28.71■■■□□ 2.19
SND1-203ENST00000463020 ERCC6L2Q5T890 1561 aa28.66■■■□□ 2.18
SND1-203ENST00000463020 SUPT5HO00267 1087 aaKnown RBP28.57■■■□□ 2.16
SND1-203ENST00000463020 GRIN2AQ12879 1464 aa28.56■■■□□ 2.16
SND1-203ENST00000463020 ADAMTS12P58397 1594 aa28.54■■■□□ 2.16
SND1-203ENST00000463020 CEP170Q5SW79 1584 aa28.54■■■□□ 2.16
SND1-203ENST00000463020 NUP160Q12769 1436 aa28.49■■■□□ 2.15
SND1-203ENST00000463020 WRNQ14191 1432 aaPredicted RBP eCLIP28.49■■■□□ 2.15
SND1-203ENST00000463020 BIVM-ERCC5R4GMW8 1640 aa28.46■■■□□ 2.15
SND1-203ENST00000463020 TOP2BQ02880 1626 aa28.45■■■□□ 2.14
SND1-203ENST00000463020 SHROOM2Q13796 1616 aa28.4■■■□□ 2.14
SND1-203ENST00000463020 FHAD1B1AJZ9 1412 aa28.38■■■□□ 2.13
SND1-203ENST00000463020 ERICH3Q5RHP9 1530 aa28.31■■■□□ 2.12
SND1-203ENST00000463020 AEBP2Q6ZN18 517 aaPredicted RBP28.28■■■□□ 2.12
SND1-203ENST00000463020 PRG4Q92954 1404 aaPredicted RBP28.23■■■□□ 2.11
SND1-203ENST00000463020 KIF13AQ9H1H9 1805 aa28.19■■■□□ 2.1
SND1-203ENST00000463020 RUSC2Q8N2Y8 1516 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms