RNA–Protein interactions for RNA: ENST00000462998.1

PTPN23-203, Transcript of protein tyrosine phosphatase, non-receptor type 23, humanhuman

TSL 3

Gene PTPN23, Length 260 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN23-203ENST00000462998 NISCHQ9Y2I1 1504 aa27■■□□□ 1.91
PTPN23-203ENST00000462998 CCDC180Q9P1Z9 1646 aa24.08■■□□□ 1.45
PTPN23-203ENST00000462998 ABCC9O60706 1549 aa23.74■■□□□ 1.39
PTPN23-203ENST00000462998 RB1CC1Q8TDY2 1594 aa22.75■■□□□ 1.23
PTPN23-203ENST00000462998 NACADO15069 1562 aa22.67■■□□□ 1.22
PTPN23-203ENST00000462998 DCAF8L2P0C7V8 631 aa22.66■■□□□ 1.22
PTPN23-203ENST00000462998 ZCCHC6Q5VYS8 1495 aaKnown RBP22.47■■□□□ 1.19
PTPN23-203ENST00000462998 MYO15BQ96JP2 1530 aa22.45■■□□□ 1.18
PTPN23-203ENST00000462998 DCAF1Q9Y4B6 1507 aa22.31■■□□□ 1.16
PTPN23-203ENST00000462998 UNC13AQ9UPW8 1703 aa22.23■■□□□ 1.15
PTPN23-203ENST00000462998 PABPN1Q86U42 306 aaKnown RBP eCLIP22.15■■□□□ 1.14
PTPN23-203ENST00000462998 BICRAQ9NZM4 1560 aa22.05■■□□□ 1.12
PTPN23-203ENST00000462998 SCRIBQ14160 1630 aa22■■□□□ 1.11
PTPN23-203ENST00000462998 DNAJC5BQ9UF47 199 aa21.88■■□□□ 1.09
PTPN23-203ENST00000462998 SHROOM4Q9ULL8 1493 aa21.79■■□□□ 1.08
PTPN23-203ENST00000462998 EIF4G1Q04637 1599 aaKnown RBP21.49■■□□□ 1.03
PTPN23-203ENST00000462998 CC2D2AQ9P2K1 1620 aa21.45■■□□□ 1.02
PTPN23-203ENST00000462998 CECR2Q9BXF3 1484 aa21.33■■□□□ 1.01
PTPN23-203ENST00000462998 SMARCA4P51532 1647 aa21■□□□□ 0.95
PTPN23-203ENST00000462998 BAZ1AQ9NRL2 1556 aaPredicted RBP20.94■□□□□ 0.94
PTPN23-203ENST00000462998 ATAD2BQ9ULI0 1458 aa20.91■□□□□ 0.94
PTPN23-203ENST00000462998 NCAPD3P42695 1498 aa20.89■□□□□ 0.94
PTPN23-203ENST00000462998 SMARCA2P51531 1590 aa20.89■□□□□ 0.93
PTPN23-203ENST00000462998 MROH2BQ7Z745 1585 aa20.81■□□□□ 0.92
PTPN23-203ENST00000462998 HMGXB3Q12766 1538 aa20.81■□□□□ 0.92
PTPN23-203ENST00000462998 PEG3Q9GZU2 1588 aa20.76■□□□□ 0.91
PTPN23-203ENST00000462998 BAZ1BQ9UIG0 1483 aaKnown RBP20.75■□□□□ 0.91
PTPN23-203ENST00000462998 WIZO95785 1651 aa20.59■□□□□ 0.89
PTPN23-203ENST00000462998 RSF1Q96T23 1441 aaPredicted RBP20.51■□□□□ 0.87
PTPN23-203ENST00000462998 ERCC6Q03468 1493 aa20.49■□□□□ 0.87
PTPN23-203ENST00000462998 NESP48681 1621 aa20.49■□□□□ 0.87
PTPN23-203ENST00000462998 LAMC3Q9Y6N6 1575 aa20.4■□□□□ 0.86
PTPN23-203ENST00000462998 TOP2AP11388 1531 aaKnown RBP20.37■□□□□ 0.85
PTPN23-203ENST00000462998 CADPSQ9ULU8 1353 aa20.29■□□□□ 0.84
PTPN23-203ENST00000462998 CUX2O14529 1486 aa20.29■□□□□ 0.84
PTPN23-203ENST00000462998 PDS5BQ9NTI5 1447 aa20.27■□□□□ 0.83
PTPN23-203ENST00000462998 KIF21AQ7Z4S6 1674 aa20.26■□□□□ 0.83
PTPN23-203ENST00000462998 THOC2Q8NI27 1593 aaKnown RBP20.21■□□□□ 0.83
PTPN23-203ENST00000462998 CFTRP13569 1480 aa20.14■□□□□ 0.81
PTPN23-203ENST00000462998 CCDC88BA6NC98 1476 aa20.11■□□□□ 0.81
PTPN23-203ENST00000462998 FANCD2Q9BXW9 1451 aa20.09■□□□□ 0.81
PTPN23-203ENST00000462998 CEP164Q9UPV0 1460 aa20.09■□□□□ 0.81
PTPN23-203ENST00000462998 MRC2Q9UBG0 1479 aa20.08■□□□□ 0.81
PTPN23-203ENST00000462998 WDR62O43379 1518 aa20.02■□□□□ 0.79
PTPN23-203ENST00000462998 PRDM2Q13029 1718 aa20■□□□□ 0.79
PTPN23-203ENST00000462998 SUPT5HO00267 1087 aaKnown RBP19.91■□□□□ 0.78
PTPN23-203ENST00000462998 URB2Q14146 1524 aaKnown RBP19.9■□□□□ 0.78
PTPN23-203ENST00000462998 DNAJC5Q9H3Z4 198 aa19.82■□□□□ 0.76
PTPN23-203ENST00000462998 TOPBP1Q92547 1522 aa19.75■□□□□ 0.75
PTPN23-203ENST00000462998 ABCC8Q09428 1581 aa19.71■□□□□ 0.75
PTPN23-203ENST00000462998 DNMBPQ6XZF7 1577 aa19.71■□□□□ 0.75
PTPN23-203ENST00000462998 IFT140Q96RY7 1462 aa19.66■□□□□ 0.74
PTPN23-203ENST00000462998 ZNF608Q9ULD9 1512 aaPredicted RBP19.59■□□□□ 0.73
PTPN23-203ENST00000462998 POLA1P09884 1462 aaPredicted RBP19.56■□□□□ 0.72
PTPN23-203ENST00000462998 CUX1P39880 1505 aa19.54■□□□□ 0.72
PTPN23-203ENST00000462998 TARBP1Q13395 1621 aaKnown RBP19.54■□□□□ 0.72
PTPN23-203ENST00000462998 EIF4G3O43432 1585 aaKnown RBP19.53■□□□□ 0.72
PTPN23-203ENST00000462998 FGD5Q6ZNL6 1462 aa19.5■□□□□ 0.71
PTPN23-203ENST00000462998 RAD54L2Q9Y4B4 1467 aa19.49■□□□□ 0.71
PTPN23-203ENST00000462998 SOGA1O94964 1423 aa19.48■□□□□ 0.71
PTPN23-203ENST00000462998 AQRO60306 1485 aaKnown RBP eCLIP19.46■□□□□ 0.71
PTPN23-203ENST00000462998 OSCARQ8IYS5 282 aa19.41■□□□□ 0.7
PTPN23-203ENST00000462998 TDRD9Q8NDG6 1382 aaKnown RBP19.39■□□□□ 0.69
PTPN23-203ENST00000462998 WDR97A6NE52 1622 aa19.36■□□□□ 0.69
PTPN23-203ENST00000462998 WRNQ14191 1432 aaPredicted RBP eCLIP19.35■□□□□ 0.69
PTPN23-203ENST00000462998 BIVM-ERCC5R4GMW8 1640 aa19.33■□□□□ 0.69
PTPN23-203ENST00000462998 SYNJ1O43426 1573 aa19.33■□□□□ 0.69
PTPN23-203ENST00000462998 TOP2BQ02880 1626 aa19.33■□□□□ 0.68
PTPN23-203ENST00000462998 CHD1O14646 1710 aa19.31■□□□□ 0.68
PTPN23-203ENST00000462998 SNAPC4Q5SXM2 1469 aa19.29■□□□□ 0.68
PTPN23-203ENST00000462998 ABCA10Q8WWZ4 1543 aa19.29■□□□□ 0.68
PTPN23-203ENST00000462998 FBLN2P98095 1184 aa19.28■□□□□ 0.68
PTPN23-203ENST00000462998 GRIN2BQ13224 1484 aa19.28■□□□□ 0.68
PTPN23-203ENST00000462998 GAPVD1Q14C86 1478 aa19.26■□□□□ 0.67
PTPN23-203ENST00000462998 PBRM1Q86U86 1689 aa19.25■□□□□ 0.67
PTPN23-203ENST00000462998 ABCA5Q8WWZ7 1642 aa19.25■□□□□ 0.67
PTPN23-203ENST00000462998 MAGI1Q96QZ7 1491 aaPredicted RBP19.23■□□□□ 0.67
PTPN23-203ENST00000462998 CHMP7Q8WUX9 453 aaPredicted RBP19.18■□□□□ 0.66
PTPN23-203ENST00000462998 TRIM41Q8WV44 630 aa19.18■□□□□ 0.66
PTPN23-203ENST00000462998 SYNJ2O15056 1496 aa19.16■□□□□ 0.66
PTPN23-203ENST00000462998 RIMBP3CA6NJZ7 1639 aa19.15■□□□□ 0.66
PTPN23-203ENST00000462998 RIMBP3BA6NNM3 1639 aa19.15■□□□□ 0.66
PTPN23-203ENST00000462998 RIMBP3Q9UFD9 1639 aa19.15■□□□□ 0.66
PTPN23-203ENST00000462998 ARHGEF11O15085 1522 aa19.12■□□□□ 0.65
PTPN23-203ENST00000462998 ADAMTS12P58397 1594 aa19.08■□□□□ 0.65
PTPN23-203ENST00000462998 CLASP1Q7Z460 1538 aa19.07■□□□□ 0.64
PTPN23-203ENST00000462998 ERICH3Q5RHP9 1530 aa19.06■□□□□ 0.64
PTPN23-203ENST00000462998 GRIN2AQ12879 1464 aa19.03■□□□□ 0.64
PTPN23-203ENST00000462998 FHAD1B1AJZ9 1412 aa19.02■□□□□ 0.64
PTPN23-203ENST00000462998 KIF27Q86VH2 1401 aa18.96■□□□□ 0.63
PTPN23-203ENST00000462998 ARAP1Q96P48 1450 aa18.96■□□□□ 0.63
PTPN23-203ENST00000462998 CEP170Q5SW79 1584 aa18.95■□□□□ 0.62
PTPN23-203ENST00000462998 CYB5RLQ6IPT4 315 aa18.95■□□□□ 0.62
PTPN23-203ENST00000462998 NUP160Q12769 1436 aa18.93■□□□□ 0.62
PTPN23-203ENST00000462998 IGF1RP08069 1367 aa18.88■□□□□ 0.61
PTPN23-203ENST00000462998 CUL7Q14999 1698 aa18.87■□□□□ 0.61
PTPN23-203ENST00000462998 SHROOM2Q13796 1616 aa18.82■□□□□ 0.6
PTPN23-203ENST00000462998 ERCC6L2Q5T890 1561 aa18.81■□□□□ 0.6
PTPN23-203ENST00000462998 RUSC2Q8N2Y8 1516 aa18.8■□□□□ 0.6
PTPN23-203ENST00000462998 CARMIL1Q5VZK9 1371 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms