RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 NISCHQ9Y2I1 1504 aa38.23■■■■□ 3.71
SKA3-204ENST00000462482 ABCC9O60706 1549 aa34.35■■■■□ 3.09
SKA3-204ENST00000462482 CCDC180Q9P1Z9 1646 aa34.23■■■■□ 3.07
SKA3-204ENST00000462482 RB1CC1Q8TDY2 1594 aa32.69■■■□□ 2.82
SKA3-204ENST00000462482 DCAF8L2P0C7V8 631 aa32.48■■■□□ 2.79
SKA3-204ENST00000462482 NACADO15069 1562 aa32.45■■■□□ 2.79
SKA3-204ENST00000462482 DNAJC5BQ9UF47 199 aa32.17■■■□□ 2.74
SKA3-204ENST00000462482 PABPN1Q86U42 306 aaKnown RBP eCLIP32.04■■■□□ 2.72
SKA3-204ENST00000462482 MYO15BQ96JP2 1530 aa32■■■□□ 2.71
SKA3-204ENST00000462482 ZCCHC6Q5VYS8 1495 aaKnown RBP31.67■■■□□ 2.66
SKA3-204ENST00000462482 UNC13AQ9UPW8 1703 aa31.66■■■□□ 2.66
SKA3-204ENST00000462482 BICRAQ9NZM4 1560 aa31.6■■■□□ 2.65
SKA3-204ENST00000462482 DCAF1Q9Y4B6 1507 aa31.59■■■□□ 2.65
SKA3-204ENST00000462482 SHROOM4Q9ULL8 1493 aa31.33■■■□□ 2.61
SKA3-204ENST00000462482 SCRIBQ14160 1630 aa31.24■■■□□ 2.59
SKA3-204ENST00000462482 CECR2Q9BXF3 1484 aa30.96■■■□□ 2.55
SKA3-204ENST00000462482 CC2D2AQ9P2K1 1620 aa30.95■■■□□ 2.54
SKA3-204ENST00000462482 EIF4G1Q04637 1599 aaKnown RBP30.91■■■□□ 2.54
SKA3-204ENST00000462482 NCAPD3P42695 1498 aa29.99■■■□□ 2.39
SKA3-204ENST00000462482 ATAD2BQ9ULI0 1458 aa29.88■■■□□ 2.37
SKA3-204ENST00000462482 SMARCA2P51531 1590 aa29.81■■■□□ 2.36
SKA3-204ENST00000462482 SMARCA4P51532 1647 aa29.78■■■□□ 2.36
SKA3-204ENST00000462482 ERCC6Q03468 1493 aa29.74■■■□□ 2.35
SKA3-204ENST00000462482 HMGXB3Q12766 1538 aa29.72■■■□□ 2.35
SKA3-204ENST00000462482 BAZ1AQ9NRL2 1556 aaPredicted RBP29.71■■■□□ 2.35
SKA3-204ENST00000462482 DNAJC5Q9H3Z4 198 aa29.64■■■□□ 2.34
SKA3-204ENST00000462482 CUX2O14529 1486 aa29.63■■■□□ 2.33
SKA3-204ENST00000462482 BAZ1BQ9UIG0 1483 aaKnown RBP29.63■■■□□ 2.33
SKA3-204ENST00000462482 PEG3Q9GZU2 1588 aa29.48■■■□□ 2.31
SKA3-204ENST00000462482 NESP48681 1621 aa29.45■■■□□ 2.3
SKA3-204ENST00000462482 MROH2BQ7Z745 1585 aa29.43■■■□□ 2.3
SKA3-204ENST00000462482 LAMC3Q9Y6N6 1575 aa29.27■■■□□ 2.28
SKA3-204ENST00000462482 PDS5BQ9NTI5 1447 aa29.22■■■□□ 2.27
SKA3-204ENST00000462482 CADPSQ9ULU8 1353 aa29.12■■■□□ 2.25
SKA3-204ENST00000462482 THOC2Q8NI27 1593 aaKnown RBP29.09■■■□□ 2.25
SKA3-204ENST00000462482 WIZO95785 1651 aa29.02■■■□□ 2.24
SKA3-204ENST00000462482 KIF21AQ7Z4S6 1674 aa28.96■■■□□ 2.23
SKA3-204ENST00000462482 MRC2Q9UBG0 1479 aa28.91■■■□□ 2.22
SKA3-204ENST00000462482 RSF1Q96T23 1441 aaPredicted RBP28.88■■■□□ 2.21
SKA3-204ENST00000462482 CEP164Q9UPV0 1460 aa28.81■■■□□ 2.2
SKA3-204ENST00000462482 WDR62O43379 1518 aa28.76■■■□□ 2.19
SKA3-204ENST00000462482 FANCD2Q9BXW9 1451 aa28.76■■■□□ 2.19
SKA3-204ENST00000462482 TOP2AP11388 1531 aaKnown RBP28.74■■■□□ 2.19
SKA3-204ENST00000462482 CFTRP13569 1480 aa28.73■■■□□ 2.19
SKA3-204ENST00000462482 URB2Q14146 1524 aaKnown RBP28.45■■■□□ 2.15
SKA3-204ENST00000462482 CCDC88BA6NC98 1476 aa28.43■■■□□ 2.14
SKA3-204ENST00000462482 TRIM41Q8WV44 630 aa28.42■■■□□ 2.14
SKA3-204ENST00000462482 OSCARQ8IYS5 282 aa28.37■■■□□ 2.13
SKA3-204ENST00000462482 PRDM2Q13029 1718 aa28.23■■■□□ 2.11
SKA3-204ENST00000462482 IFT140Q96RY7 1462 aa28.23■■■□□ 2.11
SKA3-204ENST00000462482 ABCC8Q09428 1581 aa28.2■■■□□ 2.11
SKA3-204ENST00000462482 TOPBP1Q92547 1522 aa28.18■■■□□ 2.1
SKA3-204ENST00000462482 ZNF608Q9ULD9 1512 aaPredicted RBP28.11■■■□□ 2.09
SKA3-204ENST00000462482 DNMBPQ6XZF7 1577 aa28.07■■■□□ 2.08
SKA3-204ENST00000462482 EIF4G3O43432 1585 aaKnown RBP27.92■■■□□ 2.06
SKA3-204ENST00000462482 AQRO60306 1485 aaKnown RBP eCLIP27.91■■■□□ 2.063e-7■■■■■ 51.3
SKA3-204ENST00000462482 POLA1P09884 1462 aaPredicted RBP27.89■■■□□ 2.06
SKA3-204ENST00000462482 FBLN2P98095 1184 aa27.87■■■□□ 2.05
SKA3-204ENST00000462482 TARBP1Q13395 1621 aaKnown RBP27.85■■■□□ 2.05
SKA3-204ENST00000462482 SOGA1O94964 1423 aa27.84■■■□□ 2.05
SKA3-204ENST00000462482 RIMBP3CA6NJZ7 1639 aa27.8■■■□□ 2.04
SKA3-204ENST00000462482 RIMBP3BA6NNM3 1639 aa27.8■■■□□ 2.04
SKA3-204ENST00000462482 RIMBP3Q9UFD9 1639 aa27.8■■■□□ 2.04
SKA3-204ENST00000462482 RAD54L2Q9Y4B4 1467 aa27.79■■■□□ 2.04
SKA3-204ENST00000462482 ARHGEF11O15085 1522 aa27.78■■■□□ 2.04
SKA3-204ENST00000462482 TDRD9Q8NDG6 1382 aaKnown RBP27.77■■■□□ 2.04
SKA3-204ENST00000462482 FGD5Q6ZNL6 1462 aa27.73■■■□□ 2.03
SKA3-204ENST00000462482 SUPT5HO00267 1087 aaKnown RBP27.73■■■□□ 2.03
SKA3-204ENST00000462482 CYB5RLQ6IPT4 315 aa27.69■■■□□ 2.02
SKA3-204ENST00000462482 CUX1P39880 1505 aa27.66■■■□□ 2.02
SKA3-204ENST00000462482 CHMP7Q8WUX9 453 aaPredicted RBP27.65■■■□□ 2.02
SKA3-204ENST00000462482 CHD1O14646 1710 aa27.64■■■□□ 2.01
SKA3-204ENST00000462482 WDR97A6NE52 1622 aa27.63■■■□□ 2.01
SKA3-204ENST00000462482 SNAPC4Q5SXM2 1469 aa27.62■■■□□ 2.01
SKA3-204ENST00000462482 GRIN2BQ13224 1484 aa27.59■■■□□ 2.01
SKA3-204ENST00000462482 MAGI1Q96QZ7 1491 aaPredicted RBP27.57■■■□□ 2
SKA3-204ENST00000462482 ARAP1Q96P48 1450 aa27.5■■□□□ 1.99
SKA3-204ENST00000462482 SYNJ2O15056 1496 aa27.48■■□□□ 1.99
SKA3-204ENST00000462482 GAPVD1Q14C86 1478 aa27.47■■□□□ 1.99
SKA3-204ENST00000462482 SYNJ1O43426 1573 aa27.47■■□□□ 1.99
SKA3-204ENST00000462482 TRHP20396 242 aaPredicted RBP27.45■■□□□ 1.98
SKA3-204ENST00000462482 ABCA10Q8WWZ4 1543 aa27.41■■□□□ 1.98
SKA3-204ENST00000462482 CLASP1Q7Z460 1538 aa27.4■■□□□ 1.98
SKA3-204ENST00000462482 WRNQ14191 1432 aaPredicted RBP eCLIP27.4■■□□□ 1.98
SKA3-204ENST00000462482 PBRM1Q86U86 1689 aa27.29■■□□□ 1.96
SKA3-204ENST00000462482 ABCA5Q8WWZ7 1642 aa27.28■■□□□ 1.96
SKA3-204ENST00000462482 TOP2BQ02880 1626 aa27.21■■□□□ 1.95
SKA3-204ENST00000462482 GRIN2AQ12879 1464 aa27.19■■□□□ 1.94
SKA3-204ENST00000462482 BIVM-ERCC5R4GMW8 1640 aa27.16■■□□□ 1.94
SKA3-204ENST00000462482 FHAD1B1AJZ9 1412 aa27.16■■□□□ 1.94
SKA3-204ENST00000462482 ADAMTS12P58397 1594 aa27.11■■□□□ 1.93
SKA3-204ENST00000462482 NUP160Q12769 1436 aa27.09■■□□□ 1.93
SKA3-204ENST00000462482 ERICH3Q5RHP9 1530 aa27.07■■□□□ 1.92
SKA3-204ENST00000462482 CEP170Q5SW79 1584 aa27.01■■□□□ 1.92
SKA3-204ENST00000462482 ERCC6L2Q5T890 1561 aa26.94■■□□□ 1.9
SKA3-204ENST00000462482 JPH4Q96JJ6 628 aa26.91■■□□□ 1.9
SKA3-204ENST00000462482 PRG4Q92954 1404 aaPredicted RBP26.89■■□□□ 1.89
SKA3-204ENST00000462482 SHROOM2Q13796 1616 aa26.87■■□□□ 1.89
SKA3-204ENST00000462482 KIF27Q86VH2 1401 aa26.82■■□□□ 1.88
SKA3-204ENST00000462482 IGF1RP08069 1367 aa26.76■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms