RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 NISCHQ9Y2I1 1504 aa40.47■■■■■ 4.07
COL7A1-204ENST00000462475 ABCC9O60706 1549 aa36.33■■■■□ 3.41
COL7A1-204ENST00000462475 CCDC180Q9P1Z9 1646 aa36.28■■■■□ 3.4
COL7A1-204ENST00000462475 RB1CC1Q8TDY2 1594 aa34.54■■■■□ 3.12
COL7A1-204ENST00000462475 NACADO15069 1562 aa34.3■■■■□ 3.08
COL7A1-204ENST00000462475 DCAF8L2P0C7V8 631 aa34.12■■■■□ 3.05
COL7A1-204ENST00000462475 DNAJC5BQ9UF47 199 aa34.07■■■■□ 3.04
COL7A1-204ENST00000462475 MYO15BQ96JP2 1530 aa33.84■■■■□ 3.01
COL7A1-204ENST00000462475 PABPN1Q86U42 306 aaKnown RBP eCLIP33.82■■■■□ 35e-7■■■■□ 24.9
COL7A1-204ENST00000462475 UNC13AQ9UPW8 1703 aa33.74■■■□□ 2.99
COL7A1-204ENST00000462475 ZCCHC6Q5VYS8 1495 aaKnown RBP33.57■■■□□ 2.97
COL7A1-204ENST00000462475 BICRAQ9NZM4 1560 aa33.57■■■□□ 2.96
COL7A1-204ENST00000462475 DCAF1Q9Y4B6 1507 aa33.42■■■□□ 2.94
COL7A1-204ENST00000462475 SCRIBQ14160 1630 aa33.11■■■□□ 2.89
COL7A1-204ENST00000462475 SHROOM4Q9ULL8 1493 aa33.09■■■□□ 2.89
COL7A1-204ENST00000462475 CC2D2AQ9P2K1 1620 aa32.79■■■□□ 2.84
COL7A1-204ENST00000462475 EIF4G1Q04637 1599 aaKnown RBP32.74■■■□□ 2.83
COL7A1-204ENST00000462475 CECR2Q9BXF3 1484 aa32.71■■■□□ 2.83
COL7A1-204ENST00000462475 NCAPD3P42695 1498 aa31.69■■■□□ 2.66
COL7A1-204ENST00000462475 ATAD2BQ9ULI0 1458 aa31.61■■■□□ 2.65
COL7A1-204ENST00000462475 SMARCA4P51532 1647 aa31.57■■■□□ 2.64
COL7A1-204ENST00000462475 SMARCA2P51531 1590 aa31.49■■■□□ 2.63
COL7A1-204ENST00000462475 HMGXB3Q12766 1538 aa31.46■■■□□ 2.63
COL7A1-204ENST00000462475 BAZ1AQ9NRL2 1556 aaPredicted RBP31.41■■■□□ 2.62
COL7A1-204ENST00000462475 ERCC6Q03468 1493 aa31.34■■■□□ 2.61
COL7A1-204ENST00000462475 BAZ1BQ9UIG0 1483 aaKnown RBP31.3■■■□□ 2.6
COL7A1-204ENST00000462475 CUX2O14529 1486 aa31.27■■■□□ 2.6
COL7A1-204ENST00000462475 PEG3Q9GZU2 1588 aa31.26■■■□□ 2.6
COL7A1-204ENST00000462475 DNAJC5Q9H3Z4 198 aa31.23■■■□□ 2.59
COL7A1-204ENST00000462475 NESP48681 1621 aa31.22■■■□□ 2.59
COL7A1-204ENST00000462475 MROH2BQ7Z745 1585 aa31.21■■■□□ 2.59
COL7A1-204ENST00000462475 LAMC3Q9Y6N6 1575 aa30.96■■■□□ 2.55
COL7A1-204ENST00000462475 THOC2Q8NI27 1593 aaKnown RBP30.89■■■□□ 2.54
COL7A1-204ENST00000462475 WIZO95785 1651 aa30.81■■■□□ 2.52
COL7A1-204ENST00000462475 PDS5BQ9NTI5 1447 aa30.78■■■□□ 2.52
COL7A1-204ENST00000462475 KIF21AQ7Z4S6 1674 aa30.78■■■□□ 2.52
COL7A1-204ENST00000462475 CADPSQ9ULU8 1353 aa30.73■■■□□ 2.51
COL7A1-204ENST00000462475 RSF1Q96T23 1441 aaPredicted RBP30.56■■■□□ 2.48
COL7A1-204ENST00000462475 MRC2Q9UBG0 1479 aa30.54■■■□□ 2.48
COL7A1-204ENST00000462475 WDR62O43379 1518 aa30.47■■■□□ 2.47
COL7A1-204ENST00000462475 TOP2AP11388 1531 aaKnown RBP30.44■■■□□ 2.46
COL7A1-204ENST00000462475 CEP164Q9UPV0 1460 aa30.42■■■□□ 2.46
COL7A1-204ENST00000462475 FANCD2Q9BXW9 1451 aa30.39■■■□□ 2.46
COL7A1-204ENST00000462475 CFTRP13569 1480 aa30.38■■■□□ 2.45
COL7A1-204ENST00000462475 URB2Q14146 1524 aaKnown RBP30.16■■■□□ 2.42
COL7A1-204ENST00000462475 CCDC88BA6NC98 1476 aa30.09■■■□□ 2.41
COL7A1-204ENST00000462475 PRDM2Q13029 1718 aa30.02■■■□□ 2.4
COL7A1-204ENST00000462475 TRIM41Q8WV44 630 aa29.89■■■□□ 2.38
COL7A1-204ENST00000462475 OSCARQ8IYS5 282 aa29.82■■■□□ 2.36
COL7A1-204ENST00000462475 TOPBP1Q92547 1522 aa29.81■■■□□ 2.36
COL7A1-204ENST00000462475 IFT140Q96RY7 1462 aa29.8■■■□□ 2.36
COL7A1-204ENST00000462475 ZNF608Q9ULD9 1512 aaPredicted RBP29.79■■■□□ 2.36
COL7A1-204ENST00000462475 DNMBPQ6XZF7 1577 aa29.7■■■□□ 2.35
COL7A1-204ENST00000462475 ABCC8Q09428 1581 aa29.69■■■□□ 2.34
COL7A1-204ENST00000462475 EIF4G3O43432 1585 aaKnown RBP29.61■■■□□ 2.33
COL7A1-204ENST00000462475 TARBP1Q13395 1621 aaKnown RBP29.55■■■□□ 2.32
COL7A1-204ENST00000462475 POLA1P09884 1462 aaPredicted RBP29.53■■■□□ 2.32
COL7A1-204ENST00000462475 AQRO60306 1485 aaKnown RBP eCLIP29.5■■■□□ 2.31
COL7A1-204ENST00000462475 RIMBP3CA6NJZ7 1639 aa29.47■■■□□ 2.31
COL7A1-204ENST00000462475 RIMBP3BA6NNM3 1639 aa29.47■■■□□ 2.31
COL7A1-204ENST00000462475 RIMBP3Q9UFD9 1639 aa29.47■■■□□ 2.31
COL7A1-204ENST00000462475 RAD54L2Q9Y4B4 1467 aa29.42■■■□□ 2.3
COL7A1-204ENST00000462475 ARHGEF11O15085 1522 aa29.4■■■□□ 2.3
COL7A1-204ENST00000462475 SOGA1O94964 1423 aa29.37■■■□□ 2.29
COL7A1-204ENST00000462475 CHD1O14646 1710 aa29.35■■■□□ 2.29
COL7A1-204ENST00000462475 FGD5Q6ZNL6 1462 aa29.34■■■□□ 2.29
COL7A1-204ENST00000462475 CUX1P39880 1505 aa29.32■■■□□ 2.28
COL7A1-204ENST00000462475 TDRD9Q8NDG6 1382 aaKnown RBP29.32■■■□□ 2.28
COL7A1-204ENST00000462475 FBLN2P98095 1184 aa29.28■■■□□ 2.28
COL7A1-204ENST00000462475 SNAPC4Q5SXM2 1469 aa29.22■■■□□ 2.27
COL7A1-204ENST00000462475 WDR97A6NE52 1622 aa29.21■■■□□ 2.27
COL7A1-204ENST00000462475 SUPT5HO00267 1087 aaKnown RBP29.19■■■□□ 2.26
COL7A1-204ENST00000462475 CYB5RLQ6IPT4 315 aa29.14■■■□□ 2.26
COL7A1-204ENST00000462475 ARAP1Q96P48 1450 aa29.13■■■□□ 2.25
COL7A1-204ENST00000462475 GRIN2BQ13224 1484 aa29.11■■■□□ 2.25
COL7A1-204ENST00000462475 MAGI1Q96QZ7 1491 aaPredicted RBP29.11■■■□□ 2.25
COL7A1-204ENST00000462475 CLASP1Q7Z460 1538 aa29.06■■■□□ 2.24
COL7A1-204ENST00000462475 CHMP7Q8WUX9 453 aaPredicted RBP29.05■■■□□ 2.24
COL7A1-204ENST00000462475 SYNJ2O15056 1496 aa29.02■■■□□ 2.24
COL7A1-204ENST00000462475 GAPVD1Q14C86 1478 aa29.01■■■□□ 2.23
COL7A1-204ENST00000462475 SYNJ1O43426 1573 aa29.01■■■□□ 2.23
COL7A1-204ENST00000462475 ABCA10Q8WWZ4 1543 aa29■■■□□ 2.23
COL7A1-204ENST00000462475 PBRM1Q86U86 1689 aa28.98■■■□□ 2.23
COL7A1-204ENST00000462475 ABCA5Q8WWZ7 1642 aa28.96■■■□□ 2.23
COL7A1-204ENST00000462475 WRNQ14191 1432 aaPredicted RBP eCLIP28.86■■■□□ 2.21
COL7A1-204ENST00000462475 TOP2BQ02880 1626 aa28.83■■■□□ 2.21
COL7A1-204ENST00000462475 BIVM-ERCC5R4GMW8 1640 aa28.82■■■□□ 2.2
COL7A1-204ENST00000462475 TRHP20396 242 aaPredicted RBP28.8■■■□□ 2.2
COL7A1-204ENST00000462475 ADAMTS12P58397 1594 aa28.75■■■□□ 2.19
COL7A1-204ENST00000462475 GRIN2AQ12879 1464 aa28.75■■■□□ 2.19
COL7A1-204ENST00000462475 NUP160Q12769 1436 aa28.66■■■□□ 2.18
COL7A1-204ENST00000462475 CEP170Q5SW79 1584 aa28.66■■■□□ 2.18
COL7A1-204ENST00000462475 FHAD1B1AJZ9 1412 aa28.65■■■□□ 2.18
COL7A1-204ENST00000462475 ERCC6L2Q5T890 1561 aa28.63■■■□□ 2.17
COL7A1-204ENST00000462475 ERICH3Q5RHP9 1530 aa28.62■■■□□ 2.17
COL7A1-204ENST00000462475 SHROOM2Q13796 1616 aa28.51■■■□□ 2.15
COL7A1-204ENST00000462475 PRG4Q92954 1404 aaPredicted RBP28.37■■■□□ 2.13
COL7A1-204ENST00000462475 RUSC2Q8N2Y8 1516 aa28.35■■■□□ 2.13
COL7A1-204ENST00000462475 JPH4Q96JJ6 628 aa28.32■■■□□ 2.12
COL7A1-204ENST00000462475 KIF27Q86VH2 1401 aa28.26■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 1263.2 ms