RNA–Protein interactions for RNA: ENST00000462267.1

APP-211, Transcript of amyloid beta precursor protein, humanhuman

TSL 2

Gene APP, Length 667 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-211ENST00000462267 NISCHQ9Y2I1 1504 aa39.22■■■■□ 3.87
APP-211ENST00000462267 ABCC9O60706 1549 aa36.2■■■■□ 3.39
APP-211ENST00000462267 CCDC180Q9P1Z9 1646 aa35.48■■■■□ 3.27
APP-211ENST00000462267 DNAJC5BQ9UF47 199 aa34.64■■■■□ 3.14
APP-211ENST00000462267 RB1CC1Q8TDY2 1594 aa34.16■■■■□ 3.06
APP-211ENST00000462267 NACADO15069 1562 aa33.77■■■■□ 3
APP-211ENST00000462267 PABPN1Q86U42 306 aaKnown RBP eCLIP33.61■■■□□ 2.97
APP-211ENST00000462267 DCAF8L2P0C7V8 631 aa33.43■■■□□ 2.94
APP-211ENST00000462267 UNC13AQ9UPW8 1703 aa33.27■■■□□ 2.92
APP-211ENST00000462267 BICRAQ9NZM4 1560 aa33.15■■■□□ 2.9
APP-211ENST00000462267 MYO15BQ96JP2 1530 aa33.09■■■□□ 2.89
APP-211ENST00000462267 CECR2Q9BXF3 1484 aa32.72■■■□□ 2.83
APP-211ENST00000462267 SHROOM4Q9ULL8 1493 aa32.72■■■□□ 2.83
APP-211ENST00000462267 CC2D2AQ9P2K1 1620 aa32.66■■■□□ 2.82
APP-211ENST00000462267 EIF4G1Q04637 1599 aaKnown RBP32.41■■■□□ 2.78
APP-211ENST00000462267 DNAJC5Q9H3Z4 198 aa32.4■■■□□ 2.78
APP-211ENST00000462267 DCAF1Q9Y4B6 1507 aa32.38■■■□□ 2.77
APP-211ENST00000462267 ZCCHC6Q5VYS8 1495 aaKnown RBP32.34■■■□□ 2.77
APP-211ENST00000462267 SCRIBQ14160 1630 aa32.24■■■□□ 2.75
APP-211ENST00000462267 CUX2O14529 1486 aa31.55■■■□□ 2.64
APP-211ENST00000462267 ERCC6Q03468 1493 aa31.33■■■□□ 2.61
APP-211ENST00000462267 NCAPD3P42695 1498 aa31.21■■■□□ 2.59
APP-211ENST00000462267 ATAD2BQ9ULI0 1458 aa30.98■■■□□ 2.55
APP-211ENST00000462267 HMGXB3Q12766 1538 aa30.87■■■□□ 2.53
APP-211ENST00000462267 NESP48681 1621 aa30.87■■■□□ 2.53
APP-211ENST00000462267 SMARCA2P51531 1590 aa30.85■■■□□ 2.53
APP-211ENST00000462267 SMARCA4P51532 1647 aa30.72■■■□□ 2.51
APP-211ENST00000462267 THOC2Q8NI27 1593 aaKnown RBP30.7■■■□□ 2.5
APP-211ENST00000462267 BAZ1BQ9UIG0 1483 aaKnown RBP30.63■■■□□ 2.49
APP-211ENST00000462267 TRIM41Q8WV44 630 aa30.62■■■□□ 2.49
APP-211ENST00000462267 LAMC3Q9Y6N6 1575 aa30.58■■■□□ 2.49
APP-211ENST00000462267 BAZ1AQ9NRL2 1556 aaPredicted RBP30.49■■■□□ 2.47
APP-211ENST00000462267 PDS5BQ9NTI5 1447 aa30.47■■■□□ 2.47
APP-211ENST00000462267 PEG3Q9GZU2 1588 aa30.46■■■□□ 2.47
APP-211ENST00000462267 KIF21AQ7Z4S6 1674 aa30.4■■■□□ 2.46
APP-211ENST00000462267 CADPSQ9ULU8 1353 aa30.22■■■□□ 2.43
APP-211ENST00000462267 MRC2Q9UBG0 1479 aa30.22■■■□□ 2.43
APP-211ENST00000462267 MROH2BQ7Z745 1585 aa30.18■■■□□ 2.42
APP-211ENST00000462267 WDR62O43379 1518 aa30.15■■■□□ 2.42
APP-211ENST00000462267 OSCARQ8IYS5 282 aa30.03■■■□□ 2.4
APP-211ENST00000462267 CEP164Q9UPV0 1460 aa29.94■■■□□ 2.38
APP-211ENST00000462267 FANCD2Q9BXW9 1451 aa29.85■■■□□ 2.37
APP-211ENST00000462267 WIZO95785 1651 aa29.74■■■□□ 2.35
APP-211ENST00000462267 CFTRP13569 1480 aa29.71■■■□□ 2.35
APP-211ENST00000462267 URB2Q14146 1524 aaKnown RBP29.63■■■□□ 2.33
APP-211ENST00000462267 RIMBP3CA6NJZ7 1639 aa29.61■■■□□ 2.33
APP-211ENST00000462267 RIMBP3BA6NNM3 1639 aa29.61■■■□□ 2.33
APP-211ENST00000462267 RIMBP3Q9UFD9 1639 aa29.61■■■□□ 2.33
APP-211ENST00000462267 ARHGEF11O15085 1522 aa29.47■■■□□ 2.31
APP-211ENST00000462267 IFT140Q96RY7 1462 aa29.4■■■□□ 2.3
APP-211ENST00000462267 TOP2AP11388 1531 aaKnown RBP29.37■■■□□ 2.29
APP-211ENST00000462267 ZNF608Q9ULD9 1512 aaPredicted RBP29.37■■■□□ 2.29
APP-211ENST00000462267 CYB5RLQ6IPT4 315 aa29.34■■■□□ 2.29
APP-211ENST00000462267 RSF1Q96T23 1441 aaPredicted RBP29.32■■■□□ 2.28
APP-211ENST00000462267 TRHP20396 242 aaPredicted RBP29.25■■■□□ 2.27
APP-211ENST00000462267 PRDM2Q13029 1718 aa29.23■■■□□ 2.27
APP-211ENST00000462267 TOPBP1Q92547 1522 aa29.19■■■□□ 2.26
APP-211ENST00000462267 EIF4G3O43432 1585 aaKnown RBP29.15■■■□□ 2.26
APP-211ENST00000462267 ABCC8Q09428 1581 aa29.13■■■□□ 2.25
APP-211ENST00000462267 ARAP1Q96P48 1450 aa29.13■■■□□ 2.25
APP-211ENST00000462267 CCDC88BA6NC98 1476 aa29.06■■■□□ 2.24
APP-211ENST00000462267 AQRO60306 1485 aaKnown RBP eCLIP29.04■■■□□ 2.24
APP-211ENST00000462267 CHD1O14646 1710 aa29.03■■■□□ 2.24
APP-211ENST00000462267 FBLN2P98095 1184 aa29.01■■■□□ 2.23
APP-211ENST00000462267 DNMBPQ6XZF7 1577 aa29.01■■■□□ 2.23
APP-211ENST00000462267 TARBP1Q13395 1621 aaKnown RBP28.96■■■□□ 2.23
APP-211ENST00000462267 AEBP2Q6ZN18 517 aaPredicted RBP28.96■■■□□ 2.23
APP-211ENST00000462267 POLA1P09884 1462 aaPredicted RBP28.85■■■□□ 2.21
APP-211ENST00000462267 CLASP1Q7Z460 1538 aa28.75■■■□□ 2.19
APP-211ENST00000462267 TDRD9Q8NDG6 1382 aaKnown RBP28.75■■■□□ 2.19
APP-211ENST00000462267 RAD54L2Q9Y4B4 1467 aa28.74■■■□□ 2.19
APP-211ENST00000462267 SOGA1O94964 1423 aa28.73■■■□□ 2.19
APP-211ENST00000462267 CHMP7Q8WUX9 453 aaPredicted RBP28.71■■■□□ 2.19
APP-211ENST00000462267 SNAPC4Q5SXM2 1469 aa28.71■■■□□ 2.19
APP-211ENST00000462267 SYNJ1O43426 1573 aa28.68■■■□□ 2.18
APP-211ENST00000462267 WDR97A6NE52 1622 aa28.66■■■□□ 2.18
APP-211ENST00000462267 MAGI1Q96QZ7 1491 aaPredicted RBP28.64■■■□□ 2.17
APP-211ENST00000462267 GRIN2BQ13224 1484 aa28.56■■■□□ 2.16
APP-211ENST00000462267 SYNJ2O15056 1496 aa28.55■■■□□ 2.16
APP-211ENST00000462267 FGD5Q6ZNL6 1462 aa28.55■■■□□ 2.16
APP-211ENST00000462267 GAPVD1Q14C86 1478 aa28.53■■■□□ 2.16
APP-211ENST00000462267 CUX1P39880 1505 aa28.39■■■□□ 2.14
APP-211ENST00000462267 PBRM1Q86U86 1689 aa28.29■■■□□ 2.12
APP-211ENST00000462267 ABCA10Q8WWZ4 1543 aa28.22■■■□□ 2.11
APP-211ENST00000462267 ERCC6L2Q5T890 1561 aa28.21■■■□□ 2.11
APP-211ENST00000462267 ABCA5Q8WWZ7 1642 aa28.19■■■□□ 2.1
APP-211ENST00000462267 GRIN2AQ12879 1464 aa28.18■■■□□ 2.1
APP-211ENST00000462267 CEP170Q5SW79 1584 aa28.14■■■□□ 2.1
APP-211ENST00000462267 NUP160Q12769 1436 aa28.13■■■□□ 2.09
APP-211ENST00000462267 SHROOM2Q13796 1616 aa28.04■■■□□ 2.08
APP-211ENST00000462267 ADAMTS12P58397 1594 aa28.03■■■□□ 2.08
APP-211ENST00000462267 KIF13AQ9H1H9 1805 aa28.02■■■□□ 2.08
APP-211ENST00000462267 FHAD1B1AJZ9 1412 aa27.99■■■□□ 2.07
APP-211ENST00000462267 WRNQ14191 1432 aaPredicted RBP eCLIP27.98■■■□□ 2.07
APP-211ENST00000462267 PRG4Q92954 1404 aaPredicted RBP27.92■■■□□ 2.06
APP-211ENST00000462267 FAM69CQ0P6D2 419 aa27.91■■■□□ 2.06
APP-211ENST00000462267 ABCC10Q5T3U5 1492 aa27.89■■■□□ 2.06
APP-211ENST00000462267 JPH4Q96JJ6 628 aa27.87■■■□□ 2.05
APP-211ENST00000462267 NPM1P06748 294 aaKnown RBP eCLIP27.85■■■□□ 2.05
APP-211ENST00000462267 ERICH3Q5RHP9 1530 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms