RNA–Protein interactions for RNA: ENST00000461873.5

LDB1-203, Transcript of LIM domain binding 1, humanhuman

TSL 2

Gene LDB1, Length 478 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-203ENST00000461873 NISCHQ9Y2I1 1504 aa21.55■■□□□ 1.04
LDB1-203ENST00000461873 CCDC180Q9P1Z9 1646 aa19.29■□□□□ 0.68
LDB1-203ENST00000461873 ABCC9O60706 1549 aa19.17■□□□□ 0.66
LDB1-203ENST00000461873 DCAF8L2P0C7V8 631 aa18.38■□□□□ 0.53
LDB1-203ENST00000461873 RB1CC1Q8TDY2 1594 aa18.35■□□□□ 0.53
LDB1-203ENST00000461873 NACADO15069 1562 aa18.23■□□□□ 0.51
LDB1-203ENST00000461873 MYO15BQ96JP2 1530 aa17.97■□□□□ 0.47
LDB1-203ENST00000461873 PABPN1Q86U42 306 aaKnown RBP eCLIP17.91■□□□□ 0.46
LDB1-203ENST00000461873 ZCCHC6Q5VYS8 1495 aaKnown RBP17.87■□□□□ 0.45
LDB1-203ENST00000461873 UNC13AQ9UPW8 1703 aa17.84■□□□□ 0.45
LDB1-203ENST00000461873 AEBP2Q6ZN18 517 aaPredicted RBP17.81■□□□□ 0.44
LDB1-203ENST00000461873 DCAF1Q9Y4B6 1507 aa17.79■□□□□ 0.44
LDB1-203ENST00000461873 DNAJC5BQ9UF47 199 aa17.73■□□□□ 0.43
LDB1-203ENST00000461873 BICRAQ9NZM4 1560 aa17.64■□□□□ 0.41
LDB1-203ENST00000461873 SCRIBQ14160 1630 aa17.62■□□□□ 0.41
LDB1-203ENST00000461873 SHROOM4Q9ULL8 1493 aa17.54■□□□□ 0.4
LDB1-203ENST00000461873 CC2D2AQ9P2K1 1620 aa17.3■□□□□ 0.36
LDB1-203ENST00000461873 EIF4G1Q04637 1599 aaKnown RBP17.29■□□□□ 0.36
LDB1-203ENST00000461873 CECR2Q9BXF3 1484 aa17.26■□□□□ 0.35
LDB1-203ENST00000461873 CHIC1Q5VXU3 224 aa17.16■□□□□ 0.34
LDB1-203ENST00000461873 SMARCA2P51531 1590 aa16.79■□□□□ 0.28
LDB1-203ENST00000461873 SMARCA4P51532 1647 aa16.78■□□□□ 0.28
LDB1-203ENST00000461873 BAZ1AQ9NRL2 1556 aaPredicted RBP16.78■□□□□ 0.28
LDB1-203ENST00000461873 NCAPD3P42695 1498 aa16.78■□□□□ 0.28
LDB1-203ENST00000461873 ATAD2BQ9ULI0 1458 aa16.76■□□□□ 0.27
LDB1-203ENST00000461873 BAZ1BQ9UIG0 1483 aaKnown RBP16.68■□□□□ 0.26
LDB1-203ENST00000461873 HMGXB3Q12766 1538 aa16.68■□□□□ 0.26
LDB1-203ENST00000461873 ERCC6Q03468 1493 aa16.66■□□□□ 0.26
LDB1-203ENST00000461873 MROH2BQ7Z745 1585 aa16.58■□□□□ 0.24
LDB1-203ENST00000461873 PEG3Q9GZU2 1588 aa16.58■□□□□ 0.24
LDB1-203ENST00000461873 CUX2O14529 1486 aa16.47■□□□□ 0.23
LDB1-203ENST00000461873 NESP48681 1621 aa16.45■□□□□ 0.22
LDB1-203ENST00000461873 LAMC3Q9Y6N6 1575 aa16.43■□□□□ 0.22
LDB1-203ENST00000461873 WIZO95785 1651 aa16.43■□□□□ 0.22
LDB1-203ENST00000461873 PDS5BQ9NTI5 1447 aa16.4■□□□□ 0.22
LDB1-203ENST00000461873 CADPSQ9ULU8 1353 aa16.33■□□□□ 0.2
LDB1-203ENST00000461873 RSF1Q96T23 1441 aaPredicted RBP16.31■□□□□ 0.2
LDB1-203ENST00000461873 KIF21AQ7Z4S6 1674 aa16.28■□□□□ 0.2
LDB1-203ENST00000461873 DNAJC5Q9H3Z4 198 aa16.27■□□□□ 0.2
LDB1-203ENST00000461873 TOP2AP11388 1531 aaKnown RBP16.24■□□□□ 0.19
LDB1-203ENST00000461873 THOC2Q8NI27 1593 aaKnown RBP16.23■□□□□ 0.19
LDB1-203ENST00000461873 MRC2Q9UBG0 1479 aa16.18■□□□□ 0.18
LDB1-203ENST00000461873 CEP164Q9UPV0 1460 aa16.18■□□□□ 0.18
LDB1-203ENST00000461873 FANCD2Q9BXW9 1451 aa16.15■□□□□ 0.18
LDB1-203ENST00000461873 CFTRP13569 1480 aa16.13■□□□□ 0.17
LDB1-203ENST00000461873 WDR62O43379 1518 aa16.09■□□□□ 0.17
LDB1-203ENST00000461873 CCDC88BA6NC98 1476 aa16.05■□□□□ 0.16
LDB1-203ENST00000461873 PRDM2Q13029 1718 aa16.03■□□□□ 0.16
LDB1-203ENST00000461873 URB2Q14146 1524 aaKnown RBP15.94■□□□□ 0.14
LDB1-203ENST00000461873 ABCC8Q09428 1581 aa15.91■□□□□ 0.14
LDB1-203ENST00000461873 SUPT5HO00267 1087 aaKnown RBP15.9■□□□□ 0.14
LDB1-203ENST00000461873 IFT140Q96RY7 1462 aa15.84■□□□□ 0.13
LDB1-203ENST00000461873 OSCARQ8IYS5 282 aa15.84■□□□□ 0.13
LDB1-203ENST00000461873 TOPBP1Q92547 1522 aa15.83■□□□□ 0.12
LDB1-203ENST00000461873 DNMBPQ6XZF7 1577 aa15.8■□□□□ 0.12
LDB1-203ENST00000461873 TRIM41Q8WV44 630 aa15.76■□□□□ 0.11
LDB1-203ENST00000461873 ZNF608Q9ULD9 1512 aaPredicted RBP15.72■□□□□ 0.11
LDB1-203ENST00000461873 FBLN2P98095 1184 aa15.69■□□□□ 0.1
LDB1-203ENST00000461873 SOGA1O94964 1423 aa15.68■□□□□ 0.1
LDB1-203ENST00000461873 EIF4G3O43432 1585 aaKnown RBP15.67■□□□□ 0.1
LDB1-203ENST00000461873 POLA1P09884 1462 aaPredicted RBP15.67■□□□□ 0.1
LDB1-203ENST00000461873 AQRO60306 1485 aaKnown RBP eCLIP15.65■□□□□ 0.18e-7■■■■□ 24.3
LDB1-203ENST00000461873 TARBP1Q13395 1621 aaKnown RBP15.62■□□□□ 0.09
LDB1-203ENST00000461873 FGD5Q6ZNL6 1462 aa15.62■□□□□ 0.09
LDB1-203ENST00000461873 RAD54L2Q9Y4B4 1467 aa15.61■□□□□ 0.09
LDB1-203ENST00000461873 TDRD9Q8NDG6 1382 aaKnown RBP15.6■□□□□ 0.09
LDB1-203ENST00000461873 CUX1P39880 1505 aa15.58■□□□□ 0.08
LDB1-203ENST00000461873 CHMP7Q8WUX9 453 aaPredicted RBP15.57■□□□□ 0.08
LDB1-203ENST00000461873 WDR97A6NE52 1622 aa15.57■□□□□ 0.08
LDB1-203ENST00000461873 CHD1O14646 1710 aa15.54■□□□□ 0.08
LDB1-203ENST00000461873 GRIN2BQ13224 1484 aa15.51■□□□□ 0.07
LDB1-203ENST00000461873 SNAPC4Q5SXM2 1469 aa15.5■□□□□ 0.07
LDB1-203ENST00000461873 RIMBP3CA6NJZ7 1639 aa15.5■□□□□ 0.07
LDB1-203ENST00000461873 RIMBP3BA6NNM3 1639 aa15.5■□□□□ 0.07
LDB1-203ENST00000461873 RIMBP3Q9UFD9 1639 aa15.5■□□□□ 0.07
LDB1-203ENST00000461873 WRNQ14191 1432 aaPredicted RBP eCLIP15.49■□□□□ 0.07
LDB1-203ENST00000461873 MAGI1Q96QZ7 1491 aaPredicted RBP15.48■□□□□ 0.07
LDB1-203ENST00000461873 GAPVD1Q14C86 1478 aa15.47■□□□□ 0.07
LDB1-203ENST00000461873 CYB5RLQ6IPT4 315 aa15.46■□□□□ 0.07
LDB1-203ENST00000461873 ARHGEF11O15085 1522 aa15.46■□□□□ 0.07
LDB1-203ENST00000461873 SYNJ1O43426 1573 aa15.45■□□□□ 0.06
LDB1-203ENST00000461873 PBRM1Q86U86 1689 aa15.44■□□□□ 0.06
LDB1-203ENST00000461873 ABCA10Q8WWZ4 1543 aa15.43■□□□□ 0.06
LDB1-203ENST00000461873 SYNJ2O15056 1496 aa15.42■□□□□ 0.06
LDB1-203ENST00000461873 TOP2BQ02880 1626 aa15.41■□□□□ 0.06
LDB1-203ENST00000461873 BIVM-ERCC5R4GMW8 1640 aa15.39■□□□□ 0.05
LDB1-203ENST00000461873 ABCA5Q8WWZ7 1642 aa15.36■□□□□ 0.05
LDB1-203ENST00000461873 TRHP20396 242 aaPredicted RBP15.33■□□□□ 0.04
LDB1-203ENST00000461873 CLASP1Q7Z460 1538 aa15.3■□□□□ 0.04
LDB1-203ENST00000461873 FHAD1B1AJZ9 1412 aa15.29■□□□□ 0.04
LDB1-203ENST00000461873 ARAP1Q96P48 1450 aa15.28■□□□□ 0.04
LDB1-203ENST00000461873 ERICH3Q5RHP9 1530 aa15.27■□□□□ 0.04
LDB1-203ENST00000461873 GRIN2AQ12879 1464 aa15.27■□□□□ 0.04
LDB1-203ENST00000461873 ADAMTS12P58397 1594 aa15.26■□□□□ 0.03
LDB1-203ENST00000461873 KIF27Q86VH2 1401 aa15.2■□□□□ 0.02
LDB1-203ENST00000461873 NUP160Q12769 1436 aa15.17■□□□□ 0.02
LDB1-203ENST00000461873 CEP170Q5SW79 1584 aa15.17■□□□□ 0.02
LDB1-203ENST00000461873 JPH4Q96JJ6 628 aa15.14■□□□□ 0.01
LDB1-203ENST00000461873 CUL7Q14999 1698 aa15.12■□□□□ 0.01
LDB1-203ENST00000461873 PRG4Q92954 1404 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms