RNA–Protein interactions for RNA: ENST00000461703.6

TNFRSF25-209, Transcript of TNF receptor superfamily member 25, humanhuman

TSL 1 (best)

Gene TNFRSF25, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF25-209ENST00000461703 NISCHQ9Y2I1 1504 aa56.59■■■■■ 6.65
TNFRSF25-209ENST00000461703 CCDC180Q9P1Z9 1646 aa50.64■■■■■ 5.7
TNFRSF25-209ENST00000461703 ABCC9O60706 1549 aa50.17■■■■■ 5.62
TNFRSF25-209ENST00000461703 RB1CC1Q8TDY2 1594 aa47.91■■■■■ 5.26
TNFRSF25-209ENST00000461703 NACADO15069 1562 aa47.66■■■■■ 5.22
TNFRSF25-209ENST00000461703 DCAF8L2P0C7V8 631 aa47.47■■■■■ 5.19
TNFRSF25-209ENST00000461703 MYO15BQ96JP2 1530 aa47.11■■■■■ 5.13
TNFRSF25-209ENST00000461703 UNC13AQ9UPW8 1703 aa47.08■■■■■ 5.13
TNFRSF25-209ENST00000461703 ZCCHC6Q5VYS8 1495 aaKnown RBP47.02■■■■■ 5.12
TNFRSF25-209ENST00000461703 PABPN1Q86U42 306 aaKnown RBP eCLIP46.73■■■■■ 5.07
TNFRSF25-209ENST00000461703 DCAF1Q9Y4B6 1507 aa46.71■■■■■ 5.07
TNFRSF25-209ENST00000461703 DNAJC5BQ9UF47 199 aa46.64■■■■■ 5.06
TNFRSF25-209ENST00000461703 BICRAQ9NZM4 1560 aa46.62■■■■■ 5.05
TNFRSF25-209ENST00000461703 SCRIBQ14160 1630 aa46.23■■■■■ 4.99
TNFRSF25-209ENST00000461703 SHROOM4Q9ULL8 1493 aa45.82■■■■■ 4.93
TNFRSF25-209ENST00000461703 CC2D2AQ9P2K1 1620 aa45.38■■■■■ 4.86
TNFRSF25-209ENST00000461703 EIF4G1Q04637 1599 aaKnown RBP45.37■■■■■ 4.85
TNFRSF25-209ENST00000461703 CECR2Q9BXF3 1484 aa45.09■■■■■ 4.81
TNFRSF25-209ENST00000461703 SMARCA4P51532 1647 aa44.11■■■■■ 4.65
TNFRSF25-209ENST00000461703 NCAPD3P42695 1498 aa43.97■■■■■ 4.63
TNFRSF25-209ENST00000461703 ATAD2BQ9ULI0 1458 aa43.96■■■■■ 4.63
TNFRSF25-209ENST00000461703 BAZ1AQ9NRL2 1556 aaPredicted RBP43.88■■■■■ 4.61
TNFRSF25-209ENST00000461703 SMARCA2P51531 1590 aa43.84■■■■■ 4.61
TNFRSF25-209ENST00000461703 HMGXB3Q12766 1538 aa43.74■■■■■ 4.59
TNFRSF25-209ENST00000461703 MROH2BQ7Z745 1585 aa43.68■■■■■ 4.58
TNFRSF25-209ENST00000461703 PEG3Q9GZU2 1588 aa43.63■■■■■ 4.57
TNFRSF25-209ENST00000461703 BAZ1BQ9UIG0 1483 aaKnown RBP43.55■■■■■ 4.56
TNFRSF25-209ENST00000461703 NESP48681 1621 aa43.29■■■■■ 4.52
TNFRSF25-209ENST00000461703 WIZO95785 1651 aa43.24■■■■■ 4.51
TNFRSF25-209ENST00000461703 ERCC6Q03468 1493 aa43.2■■■■■ 4.51
TNFRSF25-209ENST00000461703 LAMC3Q9Y6N6 1575 aa42.96■■■■■ 4.47
TNFRSF25-209ENST00000461703 CUX2O14529 1486 aa42.94■■■■■ 4.47
TNFRSF25-209ENST00000461703 RSF1Q96T23 1441 aaPredicted RBP42.87■■■■■ 4.45
TNFRSF25-209ENST00000461703 KIF21AQ7Z4S6 1674 aa42.82■■■■■ 4.45
TNFRSF25-209ENST00000461703 THOC2Q8NI27 1593 aaKnown RBP42.78■■■■■ 4.44
TNFRSF25-209ENST00000461703 CADPSQ9ULU8 1353 aa42.64■■■■■ 4.42
TNFRSF25-209ENST00000461703 TOP2AP11388 1531 aaKnown RBP42.63■■■■■ 4.42
TNFRSF25-209ENST00000461703 PDS5BQ9NTI5 1447 aa42.59■■■■■ 4.41
TNFRSF25-209ENST00000461703 DNAJC5Q9H3Z4 198 aa42.35■■■■■ 4.37
TNFRSF25-209ENST00000461703 CFTRP13569 1480 aa42.3■■■■■ 4.36
TNFRSF25-209ENST00000461703 MRC2Q9UBG0 1479 aa42.3■■■■■ 4.36
TNFRSF25-209ENST00000461703 FANCD2Q9BXW9 1451 aa42.22■■■■■ 4.35
TNFRSF25-209ENST00000461703 CEP164Q9UPV0 1460 aa42.22■■■■■ 4.35
TNFRSF25-209ENST00000461703 WDR62O43379 1518 aa42.21■■■■■ 4.35
TNFRSF25-209ENST00000461703 CCDC88BA6NC98 1476 aa42.12■■■■■ 4.33
TNFRSF25-209ENST00000461703 PRDM2Q13029 1718 aa42.11■■■■■ 4.33
TNFRSF25-209ENST00000461703 URB2Q14146 1524 aaKnown RBP41.91■■■■■ 4.3
TNFRSF25-209ENST00000461703 TOPBP1Q92547 1522 aa41.51■■■■■ 4.24
TNFRSF25-209ENST00000461703 DNMBPQ6XZF7 1577 aa41.4■■■■■ 4.22
TNFRSF25-209ENST00000461703 ZNF608Q9ULD9 1512 aaPredicted RBP41.33■■■■■ 4.21
TNFRSF25-209ENST00000461703 IFT140Q96RY7 1462 aa41.32■■■■■ 4.2
TNFRSF25-209ENST00000461703 ABCC8Q09428 1581 aa41.31■■■■■ 4.2
TNFRSF25-209ENST00000461703 SUPT5HO00267 1087 aaKnown RBP41.29■■■■■ 4.2
TNFRSF25-209ENST00000461703 TARBP1Q13395 1621 aaKnown RBP41.16■■■■■ 4.18
TNFRSF25-209ENST00000461703 EIF4G3O43432 1585 aaKnown RBP41.16■■■■■ 4.18
TNFRSF25-209ENST00000461703 POLA1P09884 1462 aaPredicted RBP41.11■■■■■ 4.17
TNFRSF25-209ENST00000461703 CUX1P39880 1505 aa41.01■■■■■ 4.16
TNFRSF25-209ENST00000461703 RAD54L2Q9Y4B4 1467 aa40.98■■■■■ 4.15
TNFRSF25-209ENST00000461703 OSCARQ8IYS5 282 aa40.98■■■■■ 4.15
TNFRSF25-209ENST00000461703 AQRO60306 1485 aaKnown RBP eCLIP40.96■■■■■ 4.15
TNFRSF25-209ENST00000461703 FGD5Q6ZNL6 1462 aa40.94■■■■■ 4.14
TNFRSF25-209ENST00000461703 SOGA1O94964 1423 aa40.85■■■■■ 4.13
TNFRSF25-209ENST00000461703 CHD1O14646 1710 aa40.84■■■■■ 4.13
TNFRSF25-209ENST00000461703 TDRD9Q8NDG6 1382 aaKnown RBP40.75■■■■■ 4.11
TNFRSF25-209ENST00000461703 TRIM41Q8WV44 630 aa40.75■■■■■ 4.11
TNFRSF25-209ENST00000461703 WDR97A6NE52 1622 aa40.75■■■■■ 4.11
TNFRSF25-209ENST00000461703 RIMBP3CA6NJZ7 1639 aa40.64■■■■■ 4.1
TNFRSF25-209ENST00000461703 RIMBP3BA6NNM3 1639 aa40.64■■■■■ 4.1
TNFRSF25-209ENST00000461703 RIMBP3Q9UFD9 1639 aa40.64■■■■■ 4.1
TNFRSF25-209ENST00000461703 SNAPC4Q5SXM2 1469 aa40.58■■■■■ 4.09
TNFRSF25-209ENST00000461703 PBRM1Q86U86 1689 aa40.53■■■■■ 4.08
TNFRSF25-209ENST00000461703 BIVM-ERCC5R4GMW8 1640 aa40.5■■■■■ 4.07
TNFRSF25-209ENST00000461703 FBLN2P98095 1184 aa40.5■■■■■ 4.07
TNFRSF25-209ENST00000461703 SYNJ1O43426 1573 aa40.49■■■■■ 4.07
TNFRSF25-209ENST00000461703 ARHGEF11O15085 1522 aa40.49■■■■■ 4.07
TNFRSF25-209ENST00000461703 GRIN2BQ13224 1484 aa40.46■■■■■ 4.07
TNFRSF25-209ENST00000461703 TOP2BQ02880 1626 aa40.45■■■■■ 4.07
TNFRSF25-209ENST00000461703 ABCA5Q8WWZ7 1642 aa40.45■■■■■ 4.07
TNFRSF25-209ENST00000461703 ABCA10Q8WWZ4 1543 aa40.45■■■■■ 4.07
TNFRSF25-209ENST00000461703 MAGI1Q96QZ7 1491 aaPredicted RBP40.41■■■■■ 4.06
TNFRSF25-209ENST00000461703 GAPVD1Q14C86 1478 aa40.4■■■■■ 4.06
TNFRSF25-209ENST00000461703 WRNQ14191 1432 aaPredicted RBP eCLIP40.4■■■■■ 4.06
TNFRSF25-209ENST00000461703 SYNJ2O15056 1496 aa40.28■■■■■ 4.04
TNFRSF25-209ENST00000461703 CLASP1Q7Z460 1538 aa40.27■■■■■ 4.04
TNFRSF25-209ENST00000461703 CHMP7Q8WUX9 453 aaPredicted RBP40.24■■■■■ 4.03
TNFRSF25-209ENST00000461703 ARAP1Q96P48 1450 aa40.14■■■■■ 4.02
TNFRSF25-209ENST00000461703 ADAMTS12P58397 1594 aa40.1■■■■■ 4.01
TNFRSF25-209ENST00000461703 CYB5RLQ6IPT4 315 aa40.06■■■■■ 4
TNFRSF25-209ENST00000461703 GRIN2AQ12879 1464 aa39.99■■■■□ 3.99
TNFRSF25-209ENST00000461703 ERICH3Q5RHP9 1530 aa39.94■■■■□ 3.98
TNFRSF25-209ENST00000461703 CEP170Q5SW79 1584 aa39.91■■■■□ 3.98
TNFRSF25-209ENST00000461703 FHAD1B1AJZ9 1412 aa39.87■■■■□ 3.97
TNFRSF25-209ENST00000461703 NUP160Q12769 1436 aa39.82■■■■□ 3.96
TNFRSF25-209ENST00000461703 ERCC6L2Q5T890 1561 aa39.76■■■■□ 3.96
TNFRSF25-209ENST00000461703 SHROOM2Q13796 1616 aa39.68■■■■□ 3.94
TNFRSF25-209ENST00000461703 KIF27Q86VH2 1401 aa39.56■■■■□ 3.92
TNFRSF25-209ENST00000461703 RUSC2Q8N2Y8 1516 aa39.54■■■■□ 3.92
TNFRSF25-209ENST00000461703 CUL7Q14999 1698 aa39.51■■■■□ 3.92
TNFRSF25-209ENST00000461703 IGF1RP08069 1367 aa39.5■■■■□ 3.91
TNFRSF25-209ENST00000461703 TRHP20396 242 aaPredicted RBP39.43■■■■□ 3.9
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms