RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 NISCHQ9Y2I1 1504 aa34.65■■■■□ 3.14
USP4-206ENST00000461553 CCDC180Q9P1Z9 1646 aa31.13■■■□□ 2.57
USP4-206ENST00000461553 ABCC9O60706 1549 aa30.68■■■□□ 2.5
USP4-206ENST00000461553 RB1CC1Q8TDY2 1594 aa29.43■■■□□ 2.3
USP4-206ENST00000461553 NACADO15069 1562 aa29.26■■■□□ 2.28
USP4-206ENST00000461553 DCAF8L2P0C7V8 631 aa28.98■■■□□ 2.23
USP4-206ENST00000461553 MYO15BQ96JP2 1530 aa28.94■■■□□ 2.22
USP4-206ENST00000461553 UNC13AQ9UPW8 1703 aa28.86■■■□□ 2.21
USP4-206ENST00000461553 ZCCHC6Q5VYS8 1495 aaKnown RBP28.82■■■□□ 2.2
USP4-206ENST00000461553 DCAF1Q9Y4B6 1507 aa28.67■■■□□ 2.18
USP4-206ENST00000461553 BICRAQ9NZM4 1560 aa28.5■■■□□ 2.15
USP4-206ENST00000461553 PABPN1Q86U42 306 aaKnown RBP eCLIP28.5■■■□□ 2.15
USP4-206ENST00000461553 DNAJC5BQ9UF47 199 aa28.35■■■□□ 2.13
USP4-206ENST00000461553 SCRIBQ14160 1630 aa28.32■■■□□ 2.12
USP4-206ENST00000461553 SHROOM4Q9ULL8 1493 aa28.23■■■□□ 2.11
USP4-206ENST00000461553 EIF4G1Q04637 1599 aaKnown RBP27.82■■■□□ 2.04
USP4-206ENST00000461553 CC2D2AQ9P2K1 1620 aa27.81■■■□□ 2.04
USP4-206ENST00000461553 CECR2Q9BXF3 1484 aa27.63■■■□□ 2.01
USP4-206ENST00000461553 SMARCA4P51532 1647 aa27.05■■□□□ 1.92
USP4-206ENST00000461553 SMARCA2P51531 1590 aa26.93■■□□□ 1.9
USP4-206ENST00000461553 BAZ1AQ9NRL2 1556 aaPredicted RBP26.93■■□□□ 1.9
USP4-206ENST00000461553 NCAPD3P42695 1498 aa26.93■■□□□ 1.9
USP4-206ENST00000461553 ATAD2BQ9ULI0 1458 aa26.9■■□□□ 1.9
USP4-206ENST00000461553 HMGXB3Q12766 1538 aa26.87■■□□□ 1.89
USP4-206ENST00000461553 PEG3Q9GZU2 1588 aa26.76■■□□□ 1.87
USP4-206ENST00000461553 BAZ1BQ9UIG0 1483 aaKnown RBP26.72■■□□□ 1.87
USP4-206ENST00000461553 MROH2BQ7Z745 1585 aa26.68■■□□□ 1.86
USP4-206ENST00000461553 ERCC6Q03468 1493 aa26.53■■□□□ 1.84
USP4-206ENST00000461553 WIZO95785 1651 aa26.44■■□□□ 1.82
USP4-206ENST00000461553 NESP48681 1621 aa26.43■■□□□ 1.82
USP4-206ENST00000461553 LAMC3Q9Y6N6 1575 aa26.39■■□□□ 1.82
USP4-206ENST00000461553 CUX2O14529 1486 aa26.39■■□□□ 1.82
USP4-206ENST00000461553 KIF21AQ7Z4S6 1674 aa26.25■■□□□ 1.79
USP4-206ENST00000461553 THOC2Q8NI27 1593 aaKnown RBP26.24■■□□□ 1.79
USP4-206ENST00000461553 RSF1Q96T23 1441 aaPredicted RBP26.18■■□□□ 1.78
USP4-206ENST00000461553 PDS5BQ9NTI5 1447 aa26.15■■□□□ 1.78
USP4-206ENST00000461553 TOP2AP11388 1531 aaKnown RBP26.14■■□□□ 1.78
USP4-206ENST00000461553 CADPSQ9ULU8 1353 aa26.1■■□□□ 1.77
USP4-206ENST00000461553 MRC2Q9UBG0 1479 aa25.95■■□□□ 1.74
USP4-206ENST00000461553 PRDM2Q13029 1718 aa25.93■■□□□ 1.74
USP4-206ENST00000461553 CEP164Q9UPV0 1460 aa25.91■■□□□ 1.74
USP4-206ENST00000461553 WDR62O43379 1518 aa25.9■■□□□ 1.74
USP4-206ENST00000461553 CFTRP13569 1480 aa25.9■■□□□ 1.74
USP4-206ENST00000461553 DNAJC5Q9H3Z4 198 aa25.88■■□□□ 1.73
USP4-206ENST00000461553 FANCD2Q9BXW9 1451 aa25.86■■□□□ 1.73
USP4-206ENST00000461553 CCDC88BA6NC98 1476 aa25.73■■□□□ 1.71
USP4-206ENST00000461553 URB2Q14146 1524 aaKnown RBP25.63■■□□□ 1.69
USP4-206ENST00000461553 TOPBP1Q92547 1522 aa25.42■■□□□ 1.66
USP4-206ENST00000461553 DNMBPQ6XZF7 1577 aa25.41■■□□□ 1.66
USP4-206ENST00000461553 ABCC8Q09428 1581 aa25.39■■□□□ 1.66
USP4-206ENST00000461553 IFT140Q96RY7 1462 aa25.35■■□□□ 1.65
USP4-206ENST00000461553 EIF4G3O43432 1585 aaKnown RBP25.26■■□□□ 1.63
USP4-206ENST00000461553 ZNF608Q9ULD9 1512 aaPredicted RBP25.24■■□□□ 1.63
USP4-206ENST00000461553 TARBP1Q13395 1621 aaKnown RBP25.2■■□□□ 1.62
USP4-206ENST00000461553 POLA1P09884 1462 aaPredicted RBP25.17■■□□□ 1.62
USP4-206ENST00000461553 SUPT5HO00267 1087 aaKnown RBP25.17■■□□□ 1.62
USP4-206ENST00000461553 OSCARQ8IYS5 282 aa25.09■■□□□ 1.61
USP4-206ENST00000461553 CUX1P39880 1505 aa25.08■■□□□ 1.61
USP4-206ENST00000461553 FGD5Q6ZNL6 1462 aa25.07■■□□□ 1.6
USP4-206ENST00000461553 WDR97A6NE52 1622 aa25.05■■□□□ 1.6
USP4-206ENST00000461553 CHD1O14646 1710 aa25.05■■□□□ 1.6
USP4-206ENST00000461553 RAD54L2Q9Y4B4 1467 aa25.02■■□□□ 1.6
USP4-206ENST00000461553 AQRO60306 1485 aaKnown RBP eCLIP25.02■■□□□ 1.6
USP4-206ENST00000461553 SOGA1O94964 1423 aa25■■□□□ 1.59
USP4-206ENST00000461553 TRIM41Q8WV44 630 aa24.92■■□□□ 1.58
USP4-206ENST00000461553 RIMBP3CA6NJZ7 1639 aa24.9■■□□□ 1.58
USP4-206ENST00000461553 RIMBP3BA6NNM3 1639 aa24.9■■□□□ 1.58
USP4-206ENST00000461553 RIMBP3Q9UFD9 1639 aa24.9■■□□□ 1.58
USP4-206ENST00000461553 PBRM1Q86U86 1689 aa24.89■■□□□ 1.58
USP4-206ENST00000461553 TDRD9Q8NDG6 1382 aaKnown RBP24.89■■□□□ 1.57
USP4-206ENST00000461553 SNAPC4Q5SXM2 1469 aa24.86■■□□□ 1.57
USP4-206ENST00000461553 BIVM-ERCC5R4GMW8 1640 aa24.85■■□□□ 1.57
USP4-206ENST00000461553 MAGI1Q96QZ7 1491 aaPredicted RBP24.83■■□□□ 1.56
USP4-206ENST00000461553 ARHGEF11O15085 1522 aa24.81■■□□□ 1.56
USP4-206ENST00000461553 ABCA5Q8WWZ7 1642 aa24.81■■□□□ 1.56
USP4-206ENST00000461553 GRIN2BQ13224 1484 aa24.81■■□□□ 1.56
USP4-206ENST00000461553 TOP2BQ02880 1626 aa24.8■■□□□ 1.56
USP4-206ENST00000461553 ABCA10Q8WWZ4 1543 aa24.8■■□□□ 1.56
USP4-206ENST00000461553 FBLN2P98095 1184 aa24.78■■□□□ 1.56
USP4-206ENST00000461553 SYNJ1O43426 1573 aa24.76■■□□□ 1.55
USP4-206ENST00000461553 GAPVD1Q14C86 1478 aa24.76■■□□□ 1.55
USP4-206ENST00000461553 WRNQ14191 1432 aaPredicted RBP eCLIP24.75■■□□□ 1.55
USP4-206ENST00000461553 SYNJ2O15056 1496 aa24.71■■□□□ 1.55
USP4-206ENST00000461553 CLASP1Q7Z460 1538 aa24.68■■□□□ 1.54
USP4-206ENST00000461553 CHMP7Q8WUX9 453 aaPredicted RBP24.64■■□□□ 1.54
USP4-206ENST00000461553 ADAMTS12P58397 1594 aa24.62■■□□□ 1.53
USP4-206ENST00000461553 ARAP1Q96P48 1450 aa24.58■■□□□ 1.52
USP4-206ENST00000461553 ERICH3Q5RHP9 1530 aa24.52■■□□□ 1.52
USP4-206ENST00000461553 GRIN2AQ12879 1464 aa24.51■■□□□ 1.51
USP4-206ENST00000461553 CYB5RLQ6IPT4 315 aa24.47■■□□□ 1.51
USP4-206ENST00000461553 FHAD1B1AJZ9 1412 aa24.44■■□□□ 1.5
USP4-206ENST00000461553 CEP170Q5SW79 1584 aa24.44■■□□□ 1.5
USP4-206ENST00000461553 NUP160Q12769 1436 aa24.39■■□□□ 1.5
USP4-206ENST00000461553 SHROOM2Q13796 1616 aa24.33■■□□□ 1.49
USP4-206ENST00000461553 CUL7Q14999 1698 aa24.3■■□□□ 1.48
USP4-206ENST00000461553 ERCC6L2Q5T890 1561 aa24.27■■□□□ 1.48
USP4-206ENST00000461553 RUSC2Q8N2Y8 1516 aa24.26■■□□□ 1.47
USP4-206ENST00000461553 KIF27Q86VH2 1401 aa24.26■■□□□ 1.47
USP4-206ENST00000461553 TRHP20396 242 aaPredicted RBP24.15■■□□□ 1.46
USP4-206ENST00000461553 IGF1RP08069 1367 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms